Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., isolated from activated sludge

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 1, 2005, Pages 341-344

  Kämpfer, Peter ^a   Schulze, Renate ^b   Jäckel, Udo ^a   Malik, Khursheed A ^c   Amann, Rudolf ^d   Spring, Stefan ^c  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b BRAIN AG   (Germany)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^d MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; FATTY ACID; RNA 16S;

ACTIVATED SLUDGE; ARTICLE; BACTERIUM ISOLATION; CLUSTER ANALYSIS; COMAMONADACEAE; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GRAM NEGATIVE BACTERIUM; HYDROGENOPHAGA ATYPICA; HYDROGENOPHAGA DEFLUVII; HYDROGENOPHAGA PALLERONII; HYDROGENOPHAGA TAENIOSPIRALIS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PUBLISHING; RNA SEQUENCE; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; VALIDATION PROCESS; WASTE WATER;

COMAMONADACEAE; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; WASTE DISPOSAL, FLUID;

COMAMONADACEAE; HYDROGENOPHAGA; HYDROGENOPHAGA ATYPICA; HYDROGENOPHAGA DEFLUVII; HYDROGENOPHAGA PALLERONII; HYDROGENOPHAGA TAENIOSPIRALIS; NEGIBACTERIA;

EID: 13244295539     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.03041-0     Document Type: Article

References (19)

1. Amann, R., Ludwig, W., Schulze, R., Spring, S., Moore, E. & Schleifer, K. H. (1996a). rRNA-targeted oligonucleotide probes for the identification of genuine and former pseudomonads. Syst Appl Microbiol 19, 501-509.
2. Amann, R., Snaidr, J., Wagner, M., Ludwig, W. & Schleifer, K. H. (1996b). In situ visualization of high genetic diversity in a natural bacterial community. J Bacteriol 178, 3496-3500.
3. Contzen, M., Moore, E. R. B., Blümel, S., Stolz, A. & Kämpfer, P. (2000). Hydrogenophaga intermedia sp. nov., a 4-aminobenzene-sulfonate degrading organism. Syst Appl Microbiol 23, 487-493.
4. Gerhardt P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology.
5. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
6. Kämpfer, P., Steiof, M. & Dott, W. (1991). Microbiological characterisation of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21, 227-251.
7. Kämpfer, P., Dreyer, U., Neef, A., Dott, W. & Busse, H.-J. (2003). Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53, 93-97.
8. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA2: Molecular Evolutionary Genetics Analysis software. Bioinformatics 17, 1244-1245.
9. Ludwig, W., Strunk, O., Westram, R. & 29 other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
10. 2-fixing conditions. FEMS Microbiol Lett 11, 63-67.
11. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39 159-167.
12. Schulze, R., Spring, S., Amann, R., Huber, I., Ludwig, W., Schleifer, K.-H. & Kämpfer, P. (1999). Genotypic diversity of Acidovorax strains isolated from activated sludge and description of Acidovorax defluvii sp. nov. Syst Appl Microbiol 22, 205-214.
13. Snaidr, J., Amann, R., Huber, I., Ludwig, W. & Schleifer, K. H. (1997). Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl Environ Microbiol 63, 2884-2896.
14. 2O-producing bacterium isolated from activated sludge, and transfer of Aquaspirillum gracile to Hylemonella gracilis gen. nov., comb. nov. Int J Syst Evol Microbiol 54 99-106.
15. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
16. Wagner, M., Amann, R., Kämpfer, P., Assmus, B., Hartmann, A., Hutzler, P., Springer, N. & Schleifer, K. H. (1994 . Identification and in situ detection of gram-negative filamentous bacteria in activated sludge. Syst Appl Microbiol 17, 405-417.
17. Wen, A., Fegan, M., Hayward, C., Chakraborty, S. & Sly, L. I. (1999). Phylogenetic relationships among members of the Comamonadaceae, and description of Delftia acidovorans (den Dooren de Jong 1926 and Tamaoka et al. 1987) gen. nov., comb. nov. Int J Syst Bacteriol 49, 567-576.
18. Willems, A., Busse, J., Goor, M. & 8 other authors (1989). Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleronii comb. nov. (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava comb. nov. (formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava"), and Hydrogenophaga taeniospiralis comb. nov. (formerly Pseudomonas taeniospiralis). Int J Syst Bacteriol 39, 319-333.
19. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.