메뉴 건너뛰기




Volumn 5, Issue 4-5, 2005, Pages 419-430

Changes in the metabolome of Saccharomyces cerevisiae associated with evolution in aerobic glucose-limited chemostats

Author keywords

Chemostat culture; Extracellular intracellular metabolites; Long term adaptation; Saccharomyces cerevisiae

Indexed keywords

6 PHOSPHOFRUCTOKINASE; ADENOSINE PHOSPHATE; ALCOHOL; AMINO ACID; CARBON DIOXIDE; FUNGAL PROTEIN; GLUCOSE; GLUCOSE 6 PHOSPHATE DEHYDROGENASE; GLYCOLYTIC ENZYME; GLYOXYLIC ACID; HEXOKINASE; ISOCITRATE LYASE; MALATE SYNTHASE; METABOLOME; OXYGEN; PHOSPHOGLUCONATE DEHYDROGENASE; PYRUVATE KINASE; TREHALOSE; UNCLASSIFIED DRUG;

EID: 13244257153     PISSN: 15671356     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsyr.2004.11.008     Document Type: Article
Times cited : (81)

References (40)
  • 1
    • 0036500993 scopus 로고    scopus 로고
    • System biology: A brief overview
    • H. Kitano System biology: a brief overview Science 295 2002 1662 1664
    • (2002) Science , vol.295 , pp. 1662-1664
    • Kitano, H.1
  • 2
    • 3242746852 scopus 로고    scopus 로고
    • Functional genomics and proteomics as a foundation for systems biology
    • K. Aggarwal, and K.H. Lee Functional genomics and proteomics as a foundation for systems biology Brief Funct. Genomic Proteomic 2 3 2003 175 184
    • (2003) Brief Funct. Genomic Proteomic , vol.2 , Issue.3 , pp. 175-184
    • Aggarwal, K.1    Lee, K.H.2
  • 3
    • 0025895183 scopus 로고
    • Toward a science of metabolic engineering
    • J.E. Bailey Toward a science of metabolic engineering Science 252 1991 1668 1675
    • (1991) Science , vol.252 , pp. 1668-1675
    • Bailey, J.E.1
  • 5
    • 0001555399 scopus 로고
    • Description of the chemostat
    • A. Novick, and L. Szilard Description of the chemostat Science 112 1950 715 716
    • (1950) Science , vol.112 , pp. 715-716
    • Novick, A.1    Szilard, L.2
  • 6
    • 0001519096 scopus 로고
    • Experiments with the chemostat on spontaneous mutations of bacteria
    • A. Novick, and L. Szilard Experiments with the chemostat on spontaneous mutations of bacteria Proc. Natl. Acad. Sci. USA 36 1950 708 719
    • (1950) Proc. Natl. Acad. Sci. USA , vol.36 , pp. 708-719
    • Novick, A.1    Szilard, L.2
  • 7
    • 0015949242 scopus 로고
    • Rapid sampling of yeast cells and automated assays of adenylate, citrate, pyruvate and glucose-6-phosphate pools
    • K.E. Weibel, J.R. Mor, and A. Fiechter Rapid sampling of yeast cells and automated assays of adenylate, citrate, pyruvate and glucose-6-phosphate pools Anal. Biochem. 58 1974 208 216
    • (1974) Anal. Biochem. , vol.58 , pp. 208-216
    • Weibel, K.E.1    Mor, J.R.2    Fiechter, A.3
  • 8
    • 0019379020 scopus 로고
    • Metabolic compromises involved in the growth of microorganisms in nutrient-limited (chemostat) environments
    • D.W. Tempest, and O.M. Neijssel Metabolic compromises involved in the growth of microorganisms in nutrient-limited (chemostat) environments Basic Life Sci. 18 1981 335 356
    • (1981) Basic Life Sci. , vol.18 , pp. 335-356
    • Tempest, D.W.1    Neijssel, O.M.2
  • 9
    • 0027380246 scopus 로고
    • In vivo analysis of glucose-induced fast changes in yeast adenine nucleotide pool applying a rapid sampling technique
    • U. Theobald, W. Mailinger, M. Reuss, and M. Rizzi In vivo analysis of glucose-induced fast changes in yeast adenine nucleotide pool applying a rapid sampling technique Anal. Biochem. 214 1993 31 37
    • (1993) Anal. Biochem. , vol.214 , pp. 31-37
    • Theobald, U.1    Mailinger, W.2    Reuss, M.3    Rizzi, M.4
  • 10
    • 0343471961 scopus 로고    scopus 로고
    • In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: I. Experimental observations
    • U. Theobald, W. Mailinger, M. Baltes, M. Reuss, and M. Rizzi In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: I. Experimental observations Biotechnol. Bioeng. 55 1997 305 316
    • (1997) Biotechnol. Bioeng. , vol.55 , pp. 305-316
    • Theobald, U.1    Mailinger, W.2    Baltes, M.3    Reuss, M.4    Rizzi, M.5
  • 11
    • 0036298294 scopus 로고    scopus 로고
    • Metabolomics: Quantification of intracellular metabolite dynamics
    • A. Buchholz, J. Hurlebaus, C. Wandrey, and R. Takors Metabolomics: quantification of intracellular metabolite dynamics Biomol. Eng. 19 2002 5 15
    • (2002) Biomol. Eng. , vol.19 , pp. 5-15
    • Buchholz, A.1    Hurlebaus, J.2    Wandrey, C.3    Takors, R.4
  • 12
    • 0036752032 scopus 로고    scopus 로고
    • Pulse experiments as a prerequisite for the quantification of in vivo enzyme kinetics in aromatic amino acid pathway of Escherichia coli
    • M. Schmitz, E. Hirsch, J. Bongaerts, and R. Takors Pulse experiments as a prerequisite for the quantification of in vivo enzyme kinetics in aromatic amino acid pathway of Escherichia coli Biotechnol. Progr. 18 2002 935 941
    • (2002) Biotechnol. Progr. , vol.18 , pp. 935-941
    • Schmitz, M.1    Hirsch, E.2    Bongaerts, J.3    Takors, R.4
  • 14
    • 0021920903 scopus 로고
    • Physiological characterization of adaptive clones in evolving populations of the yeast Saccharomyces cerevisiae
    • J. Adams, C. Paquin, P.W. Oeller, and L.W. Lee Physiological characterization of adaptive clones in evolving populations of the yeast Saccharomyces cerevisiae Genetics 110 1985 173 185
    • (1985) Genetics , vol.110 , pp. 173-185
    • Adams, J.1    Paquin, C.2    Oeller, P.W.3    Lee, L.W.4
  • 15
    • 0030907550 scopus 로고    scopus 로고
    • Use of a glycerol-limited, long-term chemostat for isolation of Escherichia coli mutants with improved physiological properties
    • C. Weichert, U. Sauer, and J.E. Bailey Use of a glycerol-limited, long-term chemostat for isolation of Escherichia coli mutants with improved physiological properties Microbiology 143 1997 1567 1574
    • (1997) Microbiology , vol.143 , pp. 1567-1574
    • Weichert, C.1    Sauer, U.2    Bailey, J.E.3
  • 16
    • 0033068938 scopus 로고    scopus 로고
    • Adaptive mgl-regulatory mutations and genetic diversity evolving in glucose-limited Escherichia coli populations
    • L. Notley-McRobb, and T. Ferenci Adaptive mgl-regulatory mutations and genetic diversity evolving in glucose-limited Escherichia coli populations Environ. Microbiol. 1 1 1999 33 43
    • (1999) Environ. Microbiol. , vol.1 , Issue.1 , pp. 33-43
    • Notley-Mcrobb, L.1    Ferenci, T.2
  • 17
    • 0032877609 scopus 로고    scopus 로고
    • Mutational adaptation of Escherichia coli to glucose limitation involves distinct evolutionary pathways in aerobic and oxygen-limited environments
    • K. Manché, L. Notley-McRobb, and T. Ferenci Mutational adaptation of Escherichia coli to glucose limitation involves distinct evolutionary pathways in aerobic and oxygen-limited environments Genetics 153 1999 5 12
    • (1999) Genetics , vol.153 , pp. 5-12
    • Manché, K.1    Notley-Mcrobb, L.2    Ferenci, T.3
  • 18
    • 0035213758 scopus 로고    scopus 로고
    • Short- and long-term changes in proteome composition and kinetic properties in a culture of Escherichia coli during transition from glucose-excess to glucose-limited growth conditions in continuous culture and vice versa
    • M.L. Wick, M. Quadroni, and M. Egli Short- and long-term changes in proteome composition and kinetic properties in a culture of Escherichia coli during transition from glucose-excess to glucose-limited growth conditions in continuous culture and vice versa Environ. Microbiol. 3 9 2001 588 599
    • (2001) Environ. Microbiol. , vol.3 , Issue.9 , pp. 588-599
    • Wick, M.L.1    Quadroni, M.2    Egli, M.3
  • 19
    • 0042694209 scopus 로고    scopus 로고
    • Long-term continuous evolution of acetate-resistant Acetobacter aceti
    • P. Steiner, and U. Sauer Long-term continuous evolution of acetate-resistant Acetobacter aceti Biotechnol. Bioeng. 84 1 2003 40 44
    • (2003) Biotechnol. Bioeng. , vol.84 , Issue.1 , pp. 40-44
    • Steiner, P.1    Sauer, U.2
  • 20
    • 0031904230 scopus 로고    scopus 로고
    • Multiple duplication of yeast hexose transport genes in response to selection in glucose-limited environment
    • C.J. Brown, K.M. Todd, and R.F. Rosenzweig Multiple duplication of yeast hexose transport genes in response to selection in glucose-limited environment Mol. Biol. Evol. 15 8 1998 931 942
    • (1998) Mol. Biol. Evol. , vol.15 , Issue.8 , pp. 931-942
    • Brown, C.J.1    Todd, K.M.2    Rosenzweig, R.F.3
  • 21
    • 0033578424 scopus 로고    scopus 로고
    • Systematic changes in gene expression patterns following adaptive evolution in yeast
    • T.L. Ferea, D. Botstein, P.O. Brown, and R.F. Rosenzweig Systematic changes in gene expression patterns following adaptive evolution in yeast Proc. Natl. Acad. Sci. USA 96 1999 9721 9726
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 9721-9726
    • Ferea, T.L.1    Botstein, D.2    Brown, P.O.3    Rosenzweig, R.F.4
  • 23
    • 0026710123 scopus 로고
    • Effect of benzoic acid on metabolic fluxes in yeasts: A continuous-culture study on the regulation of respiration and alcoholic fermentation
    • C. Verduyn, E. Postma, W.A. Scheffers, and J.P. Van Dijken Effect of benzoic acid on metabolic fluxes in yeasts: a continuous-culture study on the regulation of respiration and alcoholic fermentation Yeast 8 1992 501 517
    • (1992) Yeast , vol.8 , pp. 501-517
    • Verduyn, C.1    Postma, E.2    Scheffers, W.A.3    Van Dijken, J.P.4
  • 25
    • 0038034719 scopus 로고    scopus 로고
    • Critical evaluation of sampling techniques for residual-glucose determination in carbon-limited chemostat culture of Saccharomyces cerevisiae
    • M.R. Mashego, W.M. van Gulik, J.L. Vinke, and J.J. Heijnen Critical evaluation of sampling techniques for residual-glucose determination in carbon-limited chemostat culture of Saccharomyces cerevisiae Biotechnol. Bioeng. 83 4 2003 395 399
    • (2003) Biotechnol. Bioeng. , vol.83 , Issue.4 , pp. 395-399
    • Mashego, M.R.1    Van Gulik, W.M.2    Vinke, J.L.3    Heijnen, J.J.4
  • 27
    • 0037024247 scopus 로고    scopus 로고
    • Analysis of glycolytic intermediates in Saccharomyces cerevisiae using anion exchange chromatography and electrospray ionisation with tandem mass spectrometric detection
    • J.C. Van Dam, M.R. Eman, J. Frank, H.C. Lange, G.W.K. van Dedem, and J.J. Heijnen Analysis of glycolytic intermediates in Saccharomyces cerevisiae using anion exchange chromatography and electrospray ionisation with tandem mass spectrometric detection Anal. Chem. Acta 460 2002 209 218
    • (2002) Anal. Chem. Acta , vol.460 , pp. 209-218
    • Van Dam, J.C.1    Eman, M.R.2    Frank, J.3    Lange, H.C.4    Van Dedem, G.W.K.5    Heijnen, J.J.6
  • 30
    • 0012926979 scopus 로고    scopus 로고
    • Effect of specific growth rate on fermentative capacity of bakers' yeast
    • W.P.M. Van Hoek, J.P. Van Dijken, and J.T. Pronk Effect of specific growth rate on fermentative capacity of bakers' yeast Appl. Environ. Microbiol. 64 1998 4226 4233
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4226-4233
    • Van Hoek, W.P.M.1    Van Dijken, J.P.2    Pronk, J.T.3
  • 31
    • 0028953910 scopus 로고
    • Regulation of carbon metabolism in chemostat cultures of Saccharomyces cerevisiae grown on mixtures of glucose and ethanol
    • P. De Jong-Gubbels, P. Vanrolleghem, J.J. Heijnen, J.P. van Dijken, and J.T. Pronk Regulation of carbon metabolism in chemostat cultures of Saccharomyces cerevisiae grown on mixtures of glucose and ethanol Yeast 11 1995 407 418
    • (1995) Yeast , vol.11 , pp. 407-418
    • De Jong-Gubbels, P.1    Vanrolleghem, P.2    Heijnen, J.J.3    Van Dijken, J.P.4    Pronk, J.T.5
  • 32
    • 0014353859 scopus 로고
    • The energy charge of the adenylate pool as a regulatory parameter: Interaction with feedback modifiers
    • D.E. Atkinson The energy charge of the adenylate pool as a regulatory parameter: interaction with feedback modifiers Biochemistry 7 1968 4029 4034
    • (1968) Biochemistry , vol.7 , pp. 4029-4034
    • Atkinson, D.E.1
  • 35
    • 0029079001 scopus 로고
    • Determination of intracellular trehalose and glycogen in Saccharomyces cerevisiae
    • U. Schulze, M.E. Larsen, and J. Villadsen Determination of intracellular trehalose and glycogen in Saccharomyces cerevisiae Anal. Biochem. 228 1995 143 149
    • (1995) Anal. Biochem. , vol.228 , pp. 143-149
    • Schulze, U.1    Larsen, M.E.2    Villadsen, J.3
  • 37
    • 0033771067 scopus 로고    scopus 로고
    • Physiological roles of trehalose in bacteria and yeasts: A comparative analysis
    • J.C. Argüelles Physiological roles of trehalose in bacteria and yeasts: a comparative analysis Arch. Microbiol. 174 2000 217 224
    • (2000) Arch. Microbiol. , vol.174 , pp. 217-224
    • Argüelles, J.C.1
  • 38
    • 0035161939 scopus 로고    scopus 로고
    • Reserve carbohydrates metabolism in the yeast Saccharomyces cerevisiae
    • J. François, and J.L. Parrou Reserve carbohydrates metabolism in the yeast Saccharomyces cerevisiae FEMS Microbiol. Rev. 25 2001 125 145
    • (2001) FEMS Microbiol. Rev. , vol.25 , pp. 125-145
    • François, J.1    Parrou, J.L.2
  • 39
    • 0036159045 scopus 로고    scopus 로고
    • Glycogen a covalently linked component of the cell wall in Saccharomyces cerevisiae
    • A.U. Arvindekar, and N.B. Patil Glycogen a covalently linked component of the cell wall in Saccharomyces cerevisiae Yeast 19 2002 131 139
    • (2002) Yeast , vol.19 , pp. 131-139
    • Arvindekar, A.U.1    Patil, N.B.2
  • 40
    • 0035232377 scopus 로고    scopus 로고
    • Evolutionary engineering of industrially important microbial phenotypes
    • U. Sauer Evolutionary engineering of industrially important microbial phenotypes Adv. Biochem. Eng. Biotechnol. 73 2001 129 169
    • (2001) Adv. Biochem. Eng. Biotechnol. , vol.73 , pp. 129-169
    • Sauer, U.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.