-
1
-
-
84984933234
-
High density synthetic oligonucleotide arrays
-
Lipshutz RJ, Fodor SP, Gingeras TR, Lockhart DJ: High density synthetic oligonucleotide arrays. Nat Genet 1999, 21: 0-24.
-
(1999)
Nat. Genet.
, vol.21
, pp. 20-24
-
-
Lipshutz, R.J.1
Fodor, S.P.2
Gingeras, T.R.3
Lockhart, D.J.4
-
2
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart DJ, Dong H, Byrne MC, Follettie MT, Gallo MV, Chee MS, Mittmann M, Wang C, Kobayashi M, Horton H, Brown EL: Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol 1996, 14:1675-1680.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
4
-
-
2442553938
-
-
Affymetrix 2002 edition. Edited by: Affymetrix. Santa Clara, CA, USA, Affymetrix Inc
-
Affymetrix: Microarray Suite 5.0 User's Guide. 2002 edition. Edited by: Affymetrix. Santa Clara, CA, USA, Affymetrix Inc; 2001.
-
(2001)
Microarray Suite 5.0 User's Guide
-
-
-
5
-
-
0036947892
-
Robust estimators for expression analysis
-
Hubbell E, Liu WM, Mei R: Robust estimators for expression analysis. Bioinformatics 2002, 18:1585-1592.
-
(2002)
Bioinformatics
, vol.18
, pp. 1585-1592
-
-
Hubbell, E.1
Liu, W.M.2
Mei, R.3
-
6
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li C, Wong WH: Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci U S A 2001, 98:31-36.
-
(2001)
Proc. Natl. Acad. Sci. U S A
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
7
-
-
12244313858
-
Analysis of high density expression microarrays with signed-rank call algorithms
-
Liu WM, Mei R, Di X, Ryder TB, Hubbell E, Dee S, Webster TA, Harrington CA, Ho MH, Baid J, Smeekens SP: Analysis of high density expression microarrays with signed-rank call algorithms. Bioinformatics 2002, 18:1593-1599.
-
(2002)
Bioinformatics
, vol.18
, pp. 1593-1599
-
-
Liu, W.M.1
Mei, R.2
Di, X.3
Ryder, T.B.4
Hubbell, E.5
Dee, S.6
Webster, T.A.7
Harrington, C.A.8
Ho, M.H.9
Baid, J.10
Smeekens, S.P.11
-
8
-
-
12244298154
-
Statistical analysis of high-density oligonucleotide arrays: A multiplicative noise model
-
Sasik R., Calvo, E., and Corbeil, J.: Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model. Bioinformatics 2002, 18:1633-1640.
-
(2002)
Bioinformatics
, vol.18
, pp. 1633-1640
-
-
Sasik, R.1
Calvo, E.2
Corbeil, J.3
-
9
-
-
0036365465
-
Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays
-
Naef F, Hacker CR, Patil N, Magnasco M: Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays. Genome Biol 2002, 3:RESEARCH0018.
-
(2002)
Genome Biol.
, vol.3
-
-
Naef, F.1
Hacker, C.R.2
Patil, N.3
Magnasco, M.4
-
10
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP: Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 2003, 31:e15.
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
11
-
-
84874651701
-
-
Affymetrix: [http://www.affymetrix.com/index.affx]
-
Affymetrix: GeneChip Operating Software: User's Guide. http://wwwaffymetrixcom/ [http://www.affymetrix.com/index.affx].
-
GeneChip Operating Software: User's Guide
-
-
-
12
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush J: Microarray data normalization and transformation. Nat Genet 2002, 32 Suppl:496-501.
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL.
, pp. 496-501
-
-
Quackenbush, J.1
-
13
-
-
12244289603
-
Between-group analysis of microarray data
-
Culhane AC, Perriere G, Considine EC, Cotter TG, Higgins DG: Between-group analysis of microarray data. Bioinformatics 2002, 18:1600-1608.
-
(2002)
Bioinformatics
, vol.18
, pp. 1600-1608
-
-
Culhane, A.C.1
Perriere, G.2
Considine, E.C.3
Cotter, T.G.4
Higgins, D.G.5
-
14
-
-
0012572299
-
A variance-stabilizing transformation for gene-expression microarray data
-
Durbin BP, Hardin JS, Hawkins DM, Rocke DM: A variance-stabilizing transformation for gene-expression microarray data. Bioinformatics 2002, 18 Suppl 1:S105-10.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Durbin, B.P.1
Hardin, J.S.2
Hawkins, D.M.3
Rocke, D.M.4
-
15
-
-
0037188875
-
Normalization and analysis of DNA microarray data by self-consistency and local regression
-
Kepler TB, Crosby L, Morgan KT: Normalization and analysis of DNA microarray data by self-consistency and local regression. Genome Biol 2002, 3:RESEARCH0037.
-
(2002)
Genome Biol.
, vol.3
-
-
Kepler, T.B.1
Crosby, L.2
Morgan, K.T.3
-
16
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP: Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 2002, 30:e15.
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
17
-
-
0035752668
-
Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data
-
Schadt EE, Li C, Ellis B, Wong WH: Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data. J Cell Biochem Suppl 2001, Suppl 37:120-125.
-
(2001)
J. Cell Biochem. Suppl.
, Issue.SUPPL. 37
, pp. 120-125
-
-
Schadt, E.E.1
Li, C.2
Ellis, B.3
Wong, W.H.4
-
18
-
-
0035749210
-
Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls
-
Hill AA, Brown EL, Whitley MZ, Tucker-Kellogg G, Hunter CP, Slonim DK: Evaluation of normalization procedures for oligonucleotide array data based on spiked cRNA controls. Genome Biol 2001, 2:RESEARCH0055.
-
(2001)
Genome Biol.
, vol.2
-
-
Hill, A.A.1
Brown, E.L.2
Whitley, M.Z.3
Tucker-Kellogg, G.4
Hunter, C.P.5
Slonim, D.K.6
-
19
-
-
0037167899
-
Within the fold: Assessing differential expression measures and reproducibility in microarray assays
-
Yang IV, Chen E, Hasseman JP, Liang W, Frank BC, Wang S, Sharov V, Saeed AI, White J, Li J, Lee NH, Yeatman TJ, Quackenbush J: Within the fold: assessing differential expression measures and reproducibility in microarray assays. Genome Biol 2002, 3: esearch0062.
-
(2002)
Genome Biol.
, vol.3
-
-
Yang, I.V.1
Chen, E.2
Hasseman, J.P.3
Liang, W.4
Frank, B.C.5
Wang, S.6
Sharov, V.7
Saeed, A.I.8
White, J.9
Li, J.10
Lee, N.H.11
Yeatman, T.J.12
Quackenbush, J.13
-
20
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP: Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4:249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
21
-
-
17744413236
-
Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
-
Li C, Hung Wong W: Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biol 2001, 2:RESEARCH0032.
-
(2001)
Genome Biol.
, vol.2
-
-
Li, C.1
Hung Wong, W.2
-
22
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP: A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19: 85-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
23
-
-
0043089918
-
Transformation and normalization of oligonucleotide microarray data
-
Geller SC, Gregg JP, Hagerman P, Rocke DM: Transformation and normalization of oligonucleotide microarray data. Bioinformatics 2003, 19:1817-1823.
-
(2003)
Bioinformatics
, vol.19
, pp. 1817-1823
-
-
Geller, S.C.1
Gregg, J.P.2
Hagerman, P.3
Rocke, D.M.4
-
24
-
-
0035826686
-
Changes in global gene expression patterns during development and maturation of the rat kidney
-
Stuart RO, Bush KT, Nigam SK: Changes in global gene expression patterns during development and maturation of the rat kidney. Proc Natl Acad Sci U S A 2001, 98:5649-5654.
-
(2001)
Proc. Natl. Acad. Sci. U S A
, vol.98
, pp. 5649-5654
-
-
Stuart, R.O.1
Bush, K.T.2
Nigam, S.K.3
-
25
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 2001, 98:5116-5121.
-
(2001)
Proc. Natl. Acad. Sci. U S A
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
26
-
-
1842442623
-
A current profile of microarray laboratories: The 2002-2003 ABRF microarray research group survey of laboratories using microarray technologies
-
Knudtson KL, Griffin C, Iacobas DA, Johnson K, Khitrov G, Levy S, Massimi A, Nowak N, Viale A, Grill G, Brooks AI: A current profile of microarray laboratories: the 2002-2003 ABRF microarray research group survey of laboratories using microarray technologies. http://wwwabrforg.
-
-
-
Knudtson, K.L.1
Griffin, C.2
Iacobas, D.A.3
Johnson, K.4
Khitrov, G.5
Levy, S.6
Massimi, A.7
Nowak, N.8
Viale, A.9
Grill, G.10
Brooks, A.I.11
-
27
-
-
0035875553
-
Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
-
Tseng GC, Oh MK, Rohlin L, Liao JC, Wong WH: Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res 2001, 29:2549-2557.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2549-2557
-
-
Tseng, G.C.1
Oh, M.K.2
Rohlin, L.3
Liao, J.C.4
Wong, W.H.5
-
28
-
-
0037076772
-
Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis
-
Hoffmann R, Seidl T, Dugas M: Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis. Genome Biol 2002, 3:RESEARCH0033.
-
(2002)
Genome Biol.
, vol.3
-
-
Hoffmann, R.1
Seidl, T.2
Dugas, M.3
|