Significance of the genetic relationships deduced from partial nucleotide sequencing of infectious bursal disease virus genome segments A or B

Archives of Virology

Volumn 150, Issue 2, 2005, Pages 313-325

  Le Nouen C ^a   Rivallan, G ^a   Toquin, D ^a   Eterradossi, N ^a  

^a Healthy Pigs Production and Experimentation Section   (France)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN; VP2 PROTEIN, INFECTIOUS BURSAL DISEASE VIRUS;

ARTICLE; CLASSIFICATION; COMPARATIVE STUDY; GENETIC DATABASE; GENETICS; INFECTIOUS BURSAL DISEASE VIRUS; PHYLOGENY; VIRUS GENOME;

DATABASES, GENETIC; GENOME, VIRAL; INFECTIOUS BURSAL DISEASE VIRUS; PHYLOGENY; VIRAL STRUCTURAL PROTEINS;

INFECTIOUS BURSAL DISEASE VIRUS;

EID: 12944275407     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-004-0409-5     Document Type: Article

References (37)

1. Bayliss CD, Spies U, Shaw K, Peters RW, Papageorgiou A, Muller H, Boursnell ME (1990) A comparison of the sequences of segment A of four infectious bursal disease virus strains and identification of a variable region in VP2. J Gen Virol 71(Pt 6): 1303-1312
2. Boot HJ, ter Huurne AA, Peeters BP, Gielkens AL (1999) Efficient rescue of infectious bursal disease virus from cloned cDNA: evidence for involvement of the 3′-terminal sequence in genome replication. Virology 265(2): 330-341
3. Boot HJ, ter Huurne AA, Hoekman AJ, Peeters BP, Gielkens AL (2000) Rescue of very virulent mosaic IBDV from cloned cDNA: VP2 is not the sole determinant of the very virulent phenotype. J Virol 74(15): 6701-6711
4. Bourhy H, Kissi B, Tordo N, Badrane H, Sacramento D (1995) Molecular epidemiological tools and phylogenetic analysis of bacteria and viruses with special emphasis on lyssaviruses. Prevent Vet Med 25: 161-181
5. Brandt M, Yao K, Meihong Liu, Heckert RA, Vakharia VN (2001) Molecular determinants of virulence, cell tropism, and pathogenic phenotype of infectious bursal disease virus. J Virol 75(24): 11974-11982
6. Chettle NJ, Stuart JC, Wyeth PJ (1989) Outbreaks of virulent infectious bursal disease in East Anglia. Vet Rec 125: 271-272
7. Dobos P, Berthiaume L, Leong JA, Kibenge FSB, Müller H, Nicholson BL (1995) Family Birnaviridae In: Murphy FA, Fauquet CM, Bishop DHL, Ghabrial SA, Jarvis AW, Martelli GP, Mayo MA, Summers MD (eds) Virus taxonomy. Classification and Nomenclature of Viruses. Sixth Report of the International Committee on Taxonomy of Viruses. Arch Virol [Suppl 10]. Springer, Wien New York, pp 240-244
8. Duncan R, Mason CL, Nagy E, Leong JA, Dobos P (1991) Sequence analysis of the infectious pancreatic necrosis virus genome segment B and its encoded VP1 protein: A putative RNA-dependent RNA polymerase lacking the Gly-Asp-Asp motif. Virology 181: 541-552
9. Felsenstein J (1989) PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166, Department of Genetics, University of Washington, Seattle, Washington, USA, 1993
10. Gohara DW, Crotty S, Arnold JJ, Yoder JD, Andino R, Cameron CE (2000) Poliovirus RNA-dependent RNA polymerase (3Dpol): structural, biochemical, and biological analysis of conserved structural motifs A and B. J Biol Chem 275: 25523-25532
11. Gorbalenya AE, Pringle FM, Zeddam JL, Luke BT, Cameron CE, Kalmakoff J, Hanzlik TN, Gordon KHJ, Ward VK (2002) The palm subdomain-based active site is internally permuted in viral RNA-dependent RNA polymerases of an ancient lineage. J Mol Biol 324: 47-62
12. Grassly NC, Holmes EC (1997) A likelihood method for the detection of selection and recombination using sequence data. Mol Biol Evol 14: 239-247
13. Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52(5): 696-704
14. Hansen JL, Long AM, Schultz SC (1997) Structure of the RNA-dependent RNA polymerase of polio virus. Structure 5: 1109-1122
15. Islam MR, Zierenberg K, Muller H (2001) The genome segment B encoding the RNA-dependent RNA polymerase protein VP1 of very virulent infectious bursal disease virus (IBDV) is phylogenetically distinct from that of other IBDV strains. Arch Virol 146(12): 2481-2492
16. Kibenge FSB, Dhillon AS, Russell RG (1988) Biochemistry and immunology of infectious bursal disease virus. J Gen Virol 69: 1757-1775
17. Koonin EV (1991) The phylogeny of RNA dependent RNA polymerases of positive-stranded RNA viruses. J Gen Virol 72: 2197-2206
18. Lasher HN, Schane SM (1994) Infectious bursal disease. World Poultry Sci J 50: 134-166
19. Lim BL, Cao Y, Yu T, Mo CW (1999) Adaptation of very virulent infectious bursal disease virus to chic embryonic fibroblasts by site-directed mutagenesis of residues 279 and 284 of viral coat protein VP2. J Virol 73(4): 2854-2862
20. Lombardo E, Maraver A, Espinosa I, Fernandez-Arias A, Rodriguez FJ (2000) VP5, the nonstructural polypeptide of infectious bursal disease virus, accumulates within the host plasma membrane and induces cell lysis. Virology 277: 345-357
21. Macreadie I, Azad AA (1993) Expression and RNA dependent RNA polymerase activity of birnavirus VP1 protein bacteria and yeast. Biochem Mol Biol Int 6: 1169-1178
22. Mundt E (1999) Tissue culture infectivity of different strains of infectious bursal disease virus is determined by distinct amino acids in VP2. J Gen Virol 80: 2067-2076
23. Ng KK, Cherney MM, Vazquez AL, Machin A, Alonzo JM, Parra F, James MN (2002) Crystal strucutres of active and inactive conformations of a caliciviral RNA-dependent RNA polymerase. J Biol Chem 277: 1381-1387
24. O'Reilly EK, Kao CC (1998) Analysis of RNA-dependent RNA polymerase structure and function as guided by known polymerase structures and computer predictions of secondary structure. Virology 252: 287-303
25. Poch O, Sauvaget I, Delarue M, Tordo N (1989) Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO J 8(12): 3867-3874
26. Raue R, Mazaheri A (2003) Real-time RT-PCR based on genome segment B for the detection of infectious bursal disease virus. Arch Geflügelkde 67(1): 22-27
27. Santi N, Vakharia VN, Evensen O (2004) Identification of putative motifs involved in the virulence of infectious pancreatic necrosis virus. Virology 322: 31-40
28. Shwed PS, Dobos P, Cameron LA, Vakharia VN, Duncan R (2002) Birnavirus VP1 proteins from a distinct subgroup of RNA-dependent RNA polymerases lacking a GDD motif. Virology 296: 241-250
29. Tosh C, Hemadri D, Sanyal A, Bandyopadhyay SK (2003) Genetic and antigenic analysis of two recently circulating genotypes of type A foot-and-mouth disease virus in India: evidence for positive selection in the capsid-coding genes. Arch Virol 148: 853-869
30. Vakharia VN, He J, Ahamed B, Snyder DB (1994) Molecular basis of antigenic variation in infectious bursal disease virus. Virus Res 31: 265-273
31. van Den Berg TR, Gonze M, Meulemans G (1991) Acute infectious bursal disease in polutry: isolation and characterisation of a highly virulent strain. Avian Pathol 20: 409-421
32. van Den Berg TP (2000) Acute infectious bursal disease in poultry: a review. Avian Pathol 29: 175-194
33. van Lonn AAWM, De Haas N, Zeyda I, Mundt E (2002) Alteration of amino acids in VP2 of very virulent infectious bursal disease virus results in tissue culture adaptation and attenuation in chickens. J Gen Virol 83: 121-129
34. Xu HT, Si WD, Dobos P (2004) Mapping the site of guanylylation on VP1, the protein primer for infectious pancreatic necrosis virus RNA synthesis. Virology 322: 199-210
35. Yamaguchi T, Ogawa M, Miyoshi M, Inoshima Y, Fukushi H, Hirai K (1997) Sequence and phylogenetic analysis of highly virulent infectious bursal disease virus. Arch Virol 142: 1441-1458
36. Yao K, Goodwin MA, Vakharia VN (1998) Generation of a mutant infectious bursal disease virus that do not cause bursal lesions. J Virol 72(4): 2647-2654
37. Yao K, Vakharia NV (2001) Induction of apoptosis in vitro by the 17-kDa nonstructural protein of infectious bursal disease virus: possible role in viral pathogenesis. Virology 285: 50-58