Birnavirus VP1 proteins form a distinct subgroup of RNA-dependent RNA polymerases lacking a GDD motif1

Virology

Volumn 296, Issue 2, 2002, Pages 241-250

  Shwed, Philip S ^a   Dobos, Peter ^a   Cameron, Lynne A ^a   Vakharia, Vikram N ^b   Duncan, Roy ^c  

^a UNIVERSITY OF GUELPH   (Canada)

^b UNIVERSITY OF MARYLAND   (United States)

^c DALHOUSIE UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

RNA DIRECTED RNA POLYMERASE; VIRUS PROTEIN;

AMINO ACID SEQUENCE; AQUABIRNAVIRUS; ARTICLE; BINDING SITE; BIRNAVIRIDAE; CALCULATION; CATALYSIS; CONTROLLED STUDY; DROSOPHILA; ENTOMOBIRNAVIRUS; GENETIC CODE; GENOME; GENUS; INFECTIOUS BURSAL DISEASE VIRUS; MOLECULAR CLONING; NONHUMAN; OPEN READING FRAME; PANCREAS NECROSIS; PRIORITY JOURNAL; PROTEIN MOTIF; VIRION; VIRUS CHARACTERIZATION;

AQUABIRNAVIRUS; AVIBIRNAVIRUS; BIRNAVIRIDAE; DROSOPHILA X VIRUS; ENTOMOBIRNAVIRUS; INFECTIOUS BURSAL DISEASE VIRUS; INFECTIOUS PANCREATIC NECROSIS VIRUS;

EID: 0036292205     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2001.1334     Document Type: Article

References (58)

1. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
2. A sequence motif in many polymerases
3. Homologies and anomalies in primary structural patterns of nucleotide binding proteins
4. The characterization and molecular cloning of the double-stranded RNA genome of an Australian strain of infectious bursal disease virus
5. Completion of the sequence of the genome of the coronavirus avian infectious bronchitis virus
6. Relationships among the positive strand and double-strand RNA viruses as viewed through their RNA-dependent RNA polymerase
7. A closely related group of RNA-dependent RNA polymerases from double stranded viruses
8. A mechanism for initiating RNA polymerization
9. Characterization of the VPg-dsRNA linkage of infectious pancreatic necrosis virus
10. Cloning the double-stranded RNA genes of reovirus: The sequence of the cloned S2 gene
11. Sequence analysis of the bicistronic Drosophila X virus genome segment A and its encoded polypeptide
12. In vitro guanylylation of infectious pancreatic necrosis virus polypeptide VP1
13. The molecular biology of infectious pancreatic necrosis virus (IPNV)
14. Protein primed RNA synthesis in vitro by the virion-associated RNA polymerase of infectious pancreatic necrosis virus
15. Peptide map comparison of infectious pancreatic necrosis virus-specific polypeptides
16. The nucleotide sequence of infectious pancreatic necrosis virus (IPNV) segment A reveals one large ORF encoding a precursor polyprotein
17. Sequence analysis of the infectious pancreatic necrosis virus genome segment B and its encoded VP1 protein: A putative RNA-dependent RNA polymerase lacking the Gly-Asp-Asp motif
18. Black beetle virus: Messenger for protein B is a subgenomic viral RNA
19. Birnavirus RNA polymerase is related to polymerases of positive strand viruses
20. A simple and very efficient method for generating cDNA libraries
21. Structure of the RNA-dependent RNA polymerase of polio virus
22. Viral RNA polymerases
23. Replication of the genome of alphaviruses
24. Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses
25. Nucleotide sequence analysis of genome segment A of infectious bursal disease virus
26. Sequence conservation in the RNA polymerase gene of infectious bursal disease viruses
27. Crystal structure at 3.5 Å resolution of HIV-1 reverse transcriptase complexed with an inhibitor
28. The phylogeny of RNA dependent RNA polymerases of positive-stranded RNA viruses
29. Evolution of double-stranded RNA viruses: A case of polyphyletic origin from different groups of positive-stranded RNA viruses
30. Evolution and taxonomy of positive-strand viruses: Implications and analysis of amino acid sequences
31. Cleavage of structural proteins during the assembly of the head of bacteriophage T4
32. Crystal structure of the RNA-dependent RNA polymerase from hepatitis C virus reveals a fully encircled active site
33. Conversion of VP1 to VPg in cells infected by infectious pancreatic necrosis virus
34. Single-stranded DNA "blue" T7 promoter plasmids: A versatile tandem promoter system for cloning and protein engineering
35. In vitro RNA synthesis of infectious pancreatic necrosis virus-associated RNA polymerase
36. Nucleotide sequence of the large double-stranded RNA segment of bacteriophage phi 6: Genes specifying the viral replicase and transcriptase
37. Sequence of the small double-stranded RNA genomic segment of infectious bursal disease virus and its deduced 90-kDa product
38. Complete nucleotide sequences of 5′ and 3′ noncoding regions of both genome segments of different strains of infectious bursal disease virus
39. Synthesis of Drosophila X virus proteins in cultured Drosophila cells
40. Coding assignments of Drosophila X virus genome segments: In vitro translation of native and denatured virion dsRNA
41. Structure of the large fragment of Escherichia coli DNA polymerase I complexed with dNTP
42. Analysis of RNA-dependent RNA polymerase structure and function as guided by known polymerase structures and computer predictions of secondary structure
43. Identification of four conserved motifs among RNA-dependent polymerase encoding elements
44. Drosophila X virus contains a 1-μm double-stranded RNA circularized by a 67-kDa terminal protein: High resolution mapping of its genome
45. Combining evolutionary information and neural networks to predict protein secondary structure
46. Functions of conserved motifs in the RNA-dependent RNA polymerase of a yeast double-stranded RNA virus
47. RNA-dependent RNA polymerase consensus sequence of the L-A double-stranded RNA virus: Definition of essential domains
48. Point mutations which drastically affect the polymerization activity of encephalomyocarditis virus-RNA dependent RNA polymerase correspond to the active site of Escherichia coli DNA polymerase I
49. Properties of RNA polymerase activity associated with infectious bursal disease virus and characterization of its reaction products
50. DNA and RNA-dependent DNA polymerases
51. A mechanism for all polymerases
52. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
53. Distantly related sequences in the α- and β-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold
54. The reverse transcriptase of hepatitis B virus acts as a protein primer for viral DNA synthesis
55. Hepadnavirus P protein utilizes a tyrosine residue in the TP domain to prime reverse transcription
56. Generation of infectious pancreatic necrosis virus from cloned cDNA