-
1
-
-
0032464349
-
Analysis of zinc binding sites in protein crystal structures
-
Alberts, I. L., K. Nadassy, and S. J. Wodak. 1998. Analysis of zinc binding sites in protein crystal structures. Protein Sci. 7:1700-1716.
-
(1998)
Protein Sci.
, vol.7
, pp. 1700-1716
-
-
Alberts, I.L.1
Nadassy, K.2
Wodak, S.J.3
-
2
-
-
0031587295
-
Pentameric and decameric structures in solution of serum amyloid P component by x-ray and neutron scattering and molecular modelling analyses
-
Ashton, A. W., M. K. Boehm, J. R. Gallimore, M. B. Pepys, and S. J. Perkins. 1997. Pentameric and decameric structures in solution of serum amyloid P component by x-ray and neutron scattering and molecular modelling analyses. J. Mol. Biol. 272:408-422.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 408-422
-
-
Ashton, A.W.1
Boehm, M.K.2
Gallimore, J.R.3
Pepys, M.B.4
Perkins, S.J.5
-
3
-
-
0004582738
-
Clan MH containing varied co-catalytic metallopeptidases
-
A. J. Barrett, N. D. Rawlings, and F. Woessner, editors. Academic Press Ltd.
-
Barrett, A. J., N. D. Rawlings, and F. Woessner. 1998. Clan MH containing varied co-catalytic metallopeptidases. In Handbook of Proteolytic Enzymes, A. J. Barrett, N. D. Rawlings, and F. Woessner, editors. Academic Press Ltd. 1412-1416.
-
(1998)
Handbook of Proteolytic Enzymes
, pp. 1412-1416
-
-
Barrett, A.J.1
Rawlings, N.D.2
Woessner, F.3
-
4
-
-
0029986297
-
Enhanced stability of carboxypeptidase from Sulfolobus solfataricus at high pressure
-
Bec, N., A. Villa, P. Tortora, V. V. Mozhaev, C. Balny, and R. Lange. 1996. Enhanced stability of carboxypeptidase from Sulfolobus solfataricus at high pressure. Biotechnol. Lett. 18:483-488.
-
(1996)
Biotechnol. Lett.
, vol.18
, pp. 483-488
-
-
Bec, N.1
Villa, A.2
Tortora, P.3
Mozhaev, V.V.4
Balny, C.5
Lange, R.6
-
5
-
-
0001050957
-
The structural basis for the regulation of tissue transglutaminase by calcium ion
-
Casadio, R., E. Polverini, P. Mariani, F. Spinozzi, F. Carsughi, A. Fontana, P. Polverino de Laureto, G. Matteucci, and C. M. Bergamini. 1999. The structural basis for the regulation of tissue transglutaminase by calcium ion. Eur. J. Biochem. 262:672-679.
-
(1999)
Eur. J. Biochem.
, vol.262
, pp. 672-679
-
-
Casadio, R.1
Polverini, E.2
Mariani, P.3
Spinozzi, F.4
Carsughi, F.5
Fontana, A.6
Polverino de Laureto, P.7
Matteucci, G.8
Bergamini, C.M.9
-
6
-
-
0035193329
-
Structural characterization of the pH-denatured states of ferricytochrome-c by synchrotron small angle X-ray scattering
-
Cinelli, S., F. Spinozzi, R. Itri, S. Finet, F. Carsughi, G. Onori, and P. Mariani. 2001. Structural characterization of the pH-denatured states of ferricytochrome-c by synchrotron small angle X-ray scattering. Biophys. J. 81:3522-3533.
-
(2001)
Biophys. J.
, vol.81
, pp. 3522-3533
-
-
Cinelli, S.1
Spinozzi, F.2
Itri, R.3
Finet, S.4
Carsughi, F.5
Onori, G.6
Mariani, P.7
-
7
-
-
0026539476
-
Purification and characterization of a thermostable carboxypeptidase from the extreme thermophilic archaebacterium Sulfolobus solfataricus
-
Colombo, S., S. D'Auria, P. Fusi, L. Zecca, C. A. Raia, and P. Tortora, 1992. Purification and characterization of a thermostable carboxypeptidase from the extreme thermophilic archaebacterium Sulfolobus solfataricus. Eur. J. Biochem. 206:349-357.
-
(1992)
Eur. J. Biochem.
, vol.206
, pp. 349-357
-
-
Colombo, S.1
D'Auria, S.2
Fusi, P.3
Zecca, L.4
Raia, C.A.5
Tortora, P.6
-
8
-
-
0029619829
-
Molecular cloning, nucleotide sequence and expression of a carboxypeptidase-encoding gene from the archaebacterium Sulfolobus solfataricus
-
Colombo, S., G. Toietta, L. Zecca, M. Vanoni, and P. Tortora. 1995. Molecular cloning, nucleotide sequence and expression of a carboxypeptidase-encoding gene from the archaebacterium Sulfolobus solfataricus. J. Bacteriol. 177:5561-5566.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5561-5566
-
-
Colombo, S.1
Toietta, G.2
Zecca, L.3
Vanoni, M.4
Tortora, P.5
-
9
-
-
0033106244
-
Evaluation and improvement of multiple sequence methods for protein secondary structure prediction
-
Cuff, J. A., and G. J. Barton. 1999. Evaluation and improvement of multiple sequence methods for protein secondary structure prediction. Proteins. 34:508-519.
-
(1999)
Proteins
, vol.34
, pp. 508-519
-
-
Cuff, J.A.1
Barton, G.J.2
-
10
-
-
0036301867
-
Crystal structure of the alcohol dehydrogenase from the hyperthermophilic archaeon Sulfolobus solfataricus
-
Esposito, L., F. Sica, C. A. Raia, A. Giordano, M. Rossi, L. Mozzarella, and A. Zagari. 2002. Crystal structure of the alcohol dehydrogenase from the hyperthermophilic archaeon Sulfolobus solfataricus. J. Mol. Biol. 318:463-477.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 463-477
-
-
Esposito, L.1
Sica, F.2
Raia, C.A.3
Giordano, A.4
Rossi, M.5
Mozzarella, L.6
Zagari, A.7
-
12
-
-
0031470779
-
Cobalamin-dependent methionine synthase from Escherichia coli: Involvement of zinc in homocysteine activation
-
Goulding, C. W., and R. Matthews. 1997. Cobalamin-dependent methionine synthase from Escherichia coli: involvement of zinc in homocysteine activation. Biochemistry. 36:15749-15757.
-
(1997)
Biochemistry
, vol.36
, pp. 15749-15757
-
-
Goulding, C.W.1
Matthews, R.2
-
14
-
-
0000933071
-
Calculation of small-angle scattering profiles using Monte Carlo simulation
-
Hansen, S. 1990. Calculation of small-angle scattering profiles using Monte Carlo simulation. J. Appl. Crystallogr. 23:344-346.
-
(1990)
J. Appl. Crystallogr.
, vol.23
, pp. 344-346
-
-
Hansen, S.1
-
15
-
-
0029975888
-
Monte Carlo modeling of small-angle scattering data from non-interacting homogeneous and heterogeneous particles in solution
-
Henderson, S. J. 1996. Monte Carlo modeling of small-angle scattering data from non-interacting homogeneous and heterogeneous particles in solution. Biophys. J. 70:1618-1627.
-
(1996)
Biophys. J.
, vol.70
, pp. 1618-1627
-
-
Henderson, S.J.1
-
16
-
-
0035140695
-
Novel bifunctional hyperthermostable carboxypeptidase/aminoacylase from Pyrococcus horikoshii OT3
-
Ishikawa, K., H. Ispida, I. Matsui, Y. Kawarabayasi, and H. Kikuchi. 2001. Novel bifunctional hyperthermostable carboxypeptidase/aminoacylase from Pyrococcus horikoshii OT3. Appl. Environ. Microbiol. 67:673-679.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 673-679
-
-
Ishikawa, K.1
Ispida, H.2
Matsui, I.3
Kawarabayasi, Y.4
Kikuchi, H.5
-
17
-
-
0034563423
-
Predictions of protein segments with the same aminoacid sequence and different secondary structure: A benchmark for predictive methods
-
Jacoboni, I., P. L. Martelli, P. Fariselli, M. Compiani, and R. Casadio. 2000. Predictions of protein segments with the same aminoacid sequence and different secondary structure: a benchmark for predictive methods. Proteins. 41:535-544.
-
(2000)
Proteins
, vol.41
, pp. 535-544
-
-
Jacoboni, I.1
Martelli, P.L.2
Fariselli, P.3
Compiani, M.4
Casadio, R.5
-
18
-
-
84985698663
-
Determination of molecular weight by neutron scattering
-
Jacrot, B., and G. Zaccai. 1981. Determination of molecular weight by neutron scattering. Biopolymers. 20:2413-2426.
-
(1981)
Biopolymers
, vol.20
, pp. 2413-2426
-
-
Jacrot, B.1
Zaccai, G.2
-
19
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., and C. Sander. 1983. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
20
-
-
0027400842
-
Molten globule of cytochrome c studied by the small angle X-ray scattering
-
Kataoka, M., Y. Hagihara, K. Mihara, and Y. Goto. 1993. Molten globule of cytochrome c studied by the small angle X-ray scattering. J. Mol. Biol. 229:591-596.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 591-596
-
-
Kataoka, M.1
Hagihara, Y.2
Mihara, K.3
Goto, Y.4
-
21
-
-
0029032691
-
Structural characterization of molten globule and native states of apomyoglobin by solution X-ray scattering
-
Kataoka, M., I. Nishii, T. Fujisawa, T. Ueki, F. Tokunaga, and Y. Goto. 1995. Structural characterization of molten globule and native states of apomyoglobin by solution X-ray scattering. J. Mol. Biol. 249:215-228.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 215-228
-
-
Kataoka, M.1
Nishii, I.2
Fujisawa, T.3
Ueki, T.4
Tokunaga, F.5
Goto, Y.6
-
22
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 227:680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
23
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., M. W. MacArthur, D. S. Moss, and J. M. Thornton. 1993. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26:283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
24
-
-
0026585599
-
Statistical determination in the average values of the extinction coefficients of tryptophan and tyrosine in native proteins
-
Mach, H., C. R. Middaugh, and R. V. Lewis. 1992. Statistical determination in the average values of the extinction coefficients of tryptophan and tyrosine in native proteins. Anal. Biochem. 200:74-80.
-
(1992)
Anal. Biochem.
, vol.200
, pp. 74-80
-
-
Mach, H.1
Middaugh, C.R.2
Lewis, R.V.3
-
26
-
-
0034046724
-
Ligand-induced conformational changes in tissue transglutaminase: Monte Carlo analysis of small-angle scattering data
-
Mariani, P., F. Carsughi, F. Spinozzi, S. Romanzetti, G. Meier, R. Casadio, and C. M. Bergamini. 2000. Ligand-induced conformational changes in tissue transglutaminase: Monte Carlo analysis of small-angle scattering data. Biophys. J. 78:3240-3251.
-
(2000)
Biophys. J.
, vol.78
, pp. 3240-3251
-
-
Mariani, P.1
Carsughi, F.2
Spinozzi, F.3
Romanzetti, S.4
Meier, G.5
Casadio, R.6
Bergamini, C.M.7
-
27
-
-
0000138509
-
Pressure and temperature control of a thermophilic carboxypeptidase from Sulfolobus solfataricus
-
Mombelli, E., N. Bec, P. Tortora, C. Balny, and R. Lange. 1996. Pressure and temperature control of a thermophilic carboxypeptidase from Sulfolobus solfataricus. Food Biotechnol. 10:131-142.
-
(1996)
Food Biotechnol.
, vol.10
, pp. 131-142
-
-
Mombelli, E.1
Bec, N.2
Tortora, P.3
Balny, C.4
Lange, R.5
-
28
-
-
0000403125
-
Small-angle scattering content and error analysis
-
More, P. B. 1980. Small-angle scattering content and error analysis. J. Appl. Crystallogr. 13:168-175.
-
(1980)
J. Appl. Crystallogr.
, vol.13
, pp. 168-175
-
-
More, P.B.1
-
29
-
-
0034966446
-
Heat-induced unfolding of neocarzinostatin, a small all-β protein investigated by small-angle x-ray scattering
-
Perez, J., P. Vachette, D. Russo, M. Desmadril, and D. Durand. 2001. Heat-induced unfolding of neocarzinostatin, a small all-β protein investigated by small-angle x-ray scattering. J. Mol. Biol. 308:721-743.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 721-743
-
-
Perez, J.1
Vachette, P.2
Russo, D.3
Desmadril, M.4
Durand, D.5
-
30
-
-
0033621117
-
Compactness of the denatured state of a fast-folding protein measured by submillisecond small angle x-ray scattering
-
Pollack, L., M. W. Tate, N. C. Darnton, J. B. Knight, S. M. Gruner, W. A. Eaton, and R. H. Austin. 1999. Compactness of the denatured state of a fast-folding protein measured by submillisecond small angle x-ray scattering. Proc. Natl. Acad. Sci. USA. 96:10115-10117.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10115-10117
-
-
Pollack, L.1
Tate, M.W.2
Darnton, N.C.3
Knight, J.B.4
Gruner, S.M.5
Eaton, W.A.6
Austin, R.H.7
-
31
-
-
0031569353
-
Crystal structure of carboxypeptidase G2, a bacterial enzyme with applications in cancer therapy
-
Rowsell, S., R. A. Pauptit, A. D. Tucker, R. G. Melton, D. M. Blow, and P. Brick. 1997. Crystal structure of carboxypeptidase G2, a bacterial enzyme with applications in cancer therapy. Structure. 5:337-347.
-
(1997)
Structure
, vol.5
, pp. 337-347
-
-
Rowsell, S.1
Pauptit, R.A.2
Tucker, A.D.3
Melton, R.G.4
Blow, D.M.5
Brick, P.6
-
32
-
-
0027136282
-
Comparative protein modeling by satisfaction of spatial restraints
-
Šali, A., and T. L. Blundell. 1993. Comparative protein modeling by satisfaction of spatial restraints. J. Mol. Biol. 234:779-815.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 779-815
-
-
Šali, A.1
Blundell, T.L.2
-
33
-
-
0031886603
-
Cellular carboxypeptidases
-
Skidgel, R. A., and E. G. Erdös. 1998. Cellular carboxypeptidases. Immunol. Rev. 161:129-141.
-
(1998)
Immunol. Rev.
, vol.161
, pp. 129-141
-
-
Skidgel, R.A.1
Erdös, E.G.2
-
34
-
-
0032534405
-
Particle shape reconstruction by small-angle scattering: Integration of group theory and maximum entropy to multiple expansion method
-
Spinozzi, F., F. Carsughi, and P. Mariani. 1998. Particle shape reconstruction by small-angle scattering: integration of group theory and maximum entropy to multiple expansion method. J. Chem. Phys. 109:10148-10158.
-
(1998)
J. Chem. Phys.
, vol.109
, pp. 10148-10158
-
-
Spinozzi, F.1
Carsughi, F.2
Mariani, P.3
-
35
-
-
0003409048
-
Protein structure prediction - Principles and approaches
-
M. J. E. Sternberg, editor. Oxford University Press, Oxford
-
Sternberg, M. J. E. 1996. Protein structure prediction - principles and approaches. In Protein Structure Prediction - A Practical Approach. M. J. E. Sternberg, editor. Oxford University Press, Oxford. 1-30.
-
(1996)
Protein Structure Prediction - A Practical Approach
, pp. 1-30
-
-
Sternberg, M.J.E.1
-
36
-
-
0034978551
-
Characterization of an aminoacylase from the hyperthermophilic archaeon Pyrococcus furiosus
-
Story, S. V., A. M. Grunden, and M. W. W. Adams. 2001. Characterization of an aminoacylase from the hyperthermophilic archaeon Pyrococcus furiosus. J. Bacteriol. 183:4259-4268.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 4259-4268
-
-
Story, S.V.1
Grunden, A.M.2
Adams, M.W.W.3
-
37
-
-
0000950063
-
Restoring three-dimensional structure of biopolymers from solution scattering
-
Svergun, D. I. 1997. Restoring three-dimensional structure of biopolymers from solution scattering. J. Appl. Crystallogr. 30:792-797.
-
(1997)
J. Appl. Crystallogr.
, vol.30
, pp. 792-797
-
-
Svergun, D.I.1
-
38
-
-
84945101258
-
New developments in direct shape determination from small-angle scattering: I. Theory and model calculations
-
Svergun, D. I., and H. B. Stuhrmann. 1991. New developments in direct shape determination from small-angle scattering: I. Theory and model calculations. Acta Crystallogr. A47:736-744.
-
(1991)
Acta Crystallogr.
, vol.A47
, pp. 736-744
-
-
Svergun, D.I.1
Stuhrmann, H.B.2
-
39
-
-
0032478214
-
Protein hydration in solution: Experimental observation by X-ray and neutron scattering
-
Svergun, D. I., S. Richard, M. H. J. Koch, Z. Sayers, S. Kuprin, and G. Zaccai. 1998. Protein hydration in solution: experimental observation by X-ray and neutron scattering. Proc. Natl. Acad. Sci. USA. 95:2267-2272.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 2267-2272
-
-
Svergun, D.I.1
Richard, S.2
Koch, M.H.J.3
Sayers, Z.4
Kuprin, S.5
Zaccai, G.6
-
40
-
-
0026782076
-
Crystal structure of carboxypeptidase T from Thermoactinomyces vulgaris
-
Teplyakov, A., K. Polyakov, G. Obmolova, B. Strokopytov, I. Kuranova, A. Osterman, N. Grishin, S. Smulevitch, O. Zagnitko, and O. Galperina. 1992. Crystal structure of carboxypeptidase T from Thermoactinomyces vulgaris. Eur. J. Biochem. 208:281-288.
-
(1992)
Eur. J. Biochem.
, vol.208
, pp. 281-288
-
-
Teplyakov, A.1
Polyakov, K.2
Obmolova, G.3
Strokopytov, B.4
Kuranova, I.5
Osterman, A.6
Grishin, N.7
Smulevitch, S.8
Zagnitko, O.9
Galperina, O.10
-
41
-
-
12444266984
-
Thermodynamics of industrially-important, enzyme-catalyzed reactions
-
Tewary, Y. B. 1990. Thermodynamics of industrially-important, enzyme-catalyzed reactions. Appl. Biochem. Biotechnol. 18:706-709.
-
(1990)
Appl. Biochem. Biotechnol.
, vol.18
, pp. 706-709
-
-
Tewary, Y.B.1
-
42
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
43
-
-
12444302392
-
Carboxypeptidase from Sulfolobus solfataricus
-
A. J. Barrett, N. D. Rawlings, and F. Woessner, editors. Academic Press Ltd
-
Tortora, P., and M. Vanoni. 1998. Carboxypeptidase from Sulfolobus solfataricus. In Handbook of Proteolytic Enzymes, A. J. Barrett, N. D. Rawlings, and F. Woessner, editors. Academic Press Ltd. 1441-1443.
-
(1998)
Handbook of Proteolytic Enzymes
, pp. 1441-1443
-
-
Tortora, P.1
Vanoni, M.2
-
44
-
-
0030736871
-
Insights into biomolecular function from small-angle scattering
-
Trewhella, J. 1997. Insights into biomolecular function from small-angle scattering. Curr. Opin. Struct. Biol. 7:702-708.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 702-708
-
-
Trewhella, J.1
-
45
-
-
0027361647
-
Structural features responsible for kinetic thermal stability of a carboxypeptidase from the archaebacterium Sulfolobus solfataricus
-
Villa, A., L. Zecca, P. Fusi, S. Colombo, G. Tedeschi, and P. Tortora. 1993. Structural features responsible for kinetic thermal stability of a carboxypeptidase from the archaebacterium Sulfolobus solfataricus. Biochem. J. 295:827-831.
-
(1993)
Biochem. J.
, vol.295
, pp. 827-831
-
-
Villa, A.1
Zecca, L.2
Fusi, P.3
Colombo, S.4
Tedeschi, G.5
Tortora, P.6
-
46
-
-
0025398721
-
WHAT IF: A molecular modeling and drug design program
-
Vriend, G. 1990. WHAT IF: a molecular modeling and drug design program. J. Mol. Graph. 8:52-56.
-
(1990)
J. Mol. Graph.
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
47
-
-
0016910821
-
Carboxypeptidase B-like and trypsin-like activities in isolated rat pancreatic islets
-
Zuhlke, H., D. F. Steiner, A. Lemmark, and C. Lipsey. 1976. Carboxypeptidase B-like and trypsin-like activities in isolated rat pancreatic islets. Ciba Foundation Symposium. 41:183-195.
-
(1976)
Ciba Foundation Symposium
, vol.41
, pp. 183-195
-
-
Zuhlke, H.1
Steiner, D.F.2
Lemmark, A.3
Lipsey, C.4
|