Monte Carlo modeling of small-angle scattering data from non-interacting homogeneous and heterogeneous particles in solution

Biophysical Journal

Volumn 70, Issue 4, 1996, Pages 1618-1627

  Henderson, Stephen J ^a  

^a NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

POLYSACCHARIDE;

ALGORITHM; ARTICLE; CALCULATION; LIGHT SCATTERING; PARTICLE SIZE; PRISM; PROTEIN ANALYSIS; SYSTEM ANALYSIS;

EID: 0029975888     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(96)79725-4     Document Type: Article

References (27)

1. Abuja, P. M., M. Schmuck, I. Pilz, P. Tomme, M. Claeyssens, and H. Esterbauer. 1988. Structural and functional domains of cellobiohydrolase I from Trichoderma reesei: a small-angle x-ray scattering study of the intact enzyme and its core. Eur. Biophys. J. 15:339-342.
2. 70 fullerenes by small-angle neutron scattering. J. Chem. Phys. 99:9224-9229.
3. Barker, J. G., and J. S. Pedersen. 1995. Instrumental smearing effects in radially symmetric small-angle scattering. J. Appl. Cryaallogr. 28:105-114.
4. Debye, P. 1915. Dispersion of roentgen rays. Ann. Phys. 46:809-823.
5. Dominguez, J. M., G. Pettersson, C. Acebal, J. Jimenez, R. Macarron, I. De La Mata, and M. P. Castillon. 1992. Spontaneous aggregation of endoglucanase I from Tricoderma reesei. Biotechnol. Appl. Biochem. 15:236-246.
6. Feigin, L. A., and D. I. Svergun. 1987. Structural Analysis by Small-Angle X-Ray and Neutron Scattering. Plenum Press, New York.
7. Graziano, V., S. E. Gerchman, D. K. Schneider, and V. Ramakrishnan. 1994. Histone H1 is located in the interior of the chromatin 30-nm filament. Nature. 368:351-354.
8. Guinier, A. 1939. Diffraction of x-rays of very small angles - application to the study of ultramicroscopic phenomena. Ann. Phys. 12:161-237.
9. Hansen, S. 1990. Calculation of small-angle scattering profiles using Monte Carlo simulation. J. Appl. Crystallogr. 23:344-346.
10. Henderson, S. J., P. Newsholme, D. B. Heidom, R. Mitchell, P. A. Seeger, D. A. Walsh, and J. Trewhella. 1992. Solution structure of phosphorylase kinase using small-angle x-ray and neutron scattering. Biochemistry. 31:437-442.
11. Henderson, S. J., E. H. Serpersu, B. S. Gerhardt, and G. J. Bunick. 1994. Conformational changes in yeast phosphoglycerate kinase upon substrate binding. Biophys. Chem. 53:95-104.
12. 60 in cyclohexane. J. Phys. Chem. In press.
13. Ibel, K., R. May, M. Sandberg, E. Mascher, E. Greijer, and P. Lundahl. 1994. Structure of dodecyl sulfate-protein complexes at subsaturaring concentrations of free detergent. Biophys. Chem. 53:77-84.
14. Ibel, K., and H. B. Stuhrmann. 1975. Comparison of neutron and x-ray scattering of dilute myoglobin solutions. J. Mol. Biol. 93:255-266.
15. Kratky, O., and I. Pilz. 1972. Recent advances and applications of diffuse x-ray small-angle scattering on biopolymers in dilute solutions. Q. Rev. Biophys. 5:481-537.
16. Ninio. J., V. Luzzati, and M. Yaniv 1972. Comparative SAXS studies on unacylated, acylated cross-linked E. coli transfer RNA. J. Mol. Biol. 71:217-229.
17. Pedersen, J. S., D. Posselt, and K. Motensen. 1990. Analytical treatment of the resolution function for small-angle scattering. J. Appl Crystallogr. 23:321-333.
18. Saito, H., Y. Yuko, and N. Uehara. 1991. Relationship between conformation and biological response for (1→3)-β-D-glucans in the activation of coagulation factor G from Limulus amebocyte lysate and host-mediated antitumor activity: demonstration of single-helix conformation as a stimulant. Carbohydr. Res. 217:181-190.
19. Schmatz, W., T. Springer, J. Schelten, and K. Ibel. 1974. Neutron small-angle scattering: experimental techniques and applications. J. Appl. Crystallogr. 7:96-116.
20. Schmidt, P. W. 1988. Collimatton effects in small-angle x-ray and neutron scattering. J. Appl. Crystallogr. 21:602-612.
21. Stuhrmann, H. B. 1970. Interpretation of small-angle scattering of dilute solutions and gases. A representation of the structures related to one particle scattering functions. Acta Crystallogr. A26:297-306.
22. Svergun, D. I, 1991. Mathematical methods in small-angle scattering data analysis. J. Appl. Crystallogr. 24:485-492.
23. Svergun, D. L, and H. B. Stuhrmann. 1991. New developments in direct shape determination from small-angle scattering. I. Theory and model calculations. Acta Crystallogr. A47:736-744.
24. Thiyagarajan, P., S. J. Henderson, and A. Joachimiak. 1996. Solution structure of GroEL and its complex with rhodanese from small-angle neutron scattering. Structure. 4:79-88.
25. Tomme, P., V. Heriban, and M. Claeyssens. 1990. Adsorption of two cellobiohydrolases from Trichoderma reesei to avicel: evidence for "exo-exo" synergism and possible "loose complex" formation. Biotechnol. Lett. 12:525-530.
26. William, H., editor. 1986. Numerical Recipes: The Art of Scientific Computing. Cambridge University Press. New York.
27. Wu, Chuan-Fu, and Sow-Hsin Chen. 1988. Small-angle neutron and x-ray scattering studies of concentrated protein solutions II. Cytochrome c. Biopolymers. 27:1065-1083.