-
1
-
-
0028864394
-
The structure of the human immunodeficiency virus type 1 TAR RNA reveals principles of RNA recognition by Tat protein
-
Aboul-ela, F., Karn, J., and Varani, G. 1995. The structure of the human immunodeficiency virus type 1 TAR RNA reveals principles of RNA recognition by Tat protein. J. Mol. Biol. 253: 313-332.
-
(1995)
J. Mol. Biol.
, vol.253
, pp. 313-332
-
-
Aboul-Ela, F.1
Karn, J.2
Varani, G.3
-
2
-
-
0029852357
-
Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge
-
-. 1996. Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge. Nucleic Acids Res. 24: 3974-3981.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3974-3981
-
-
-
3
-
-
0036290269
-
Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings
-
Al Hashimi, H.M., Gosser, Y., Gorin, A., Hu, W., Majumdar, A., and Patel, D.J. 2002. Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings. J. Mol. Biol. 315: 95-102.
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 95-102
-
-
Al Hashimi, H.M.1
Gosser, Y.2
Gorin, A.3
Hu, W.4
Majumdar, A.5
Patel, D.J.6
-
4
-
-
0032756157
-
Identity and geometry of a base triple in 16S rRNA determined by comparative sequence analysis and molecular modeling
-
Babin, P., Dolan, M., Wollenzien, P., and Gutell, R.R. 1999. Identity and geometry of a base triple in 16S rRNA determined by comparative sequence analysis and molecular modeling. RNA 5: 1430-1439.
-
(1999)
RNA
, vol.5
, pp. 1430-1439
-
-
Babin, P.1
Dolan, M.2
Wollenzien, P.3
Gutell, R.R.4
-
5
-
-
0034651819
-
Recognition of 5′-terminal TAR structure in human immunodeficiency virus-1 mRNA by eukaryotic translation initiation factor 2
-
Ben Asouli, Y., Banai, Y., Hauser, H., and Kaempfer, R. 2000. Recognition of 5′-terminal TAR structure in human immunodeficiency virus-1 mRNA by eukaryotic translation initiation factor 2. Nucleic Acids Res. 28: 1011-1018.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1011-1018
-
-
Ben Asouli, Y.1
Banai, Y.2
Hauser, H.3
Kaempfer, R.4
-
6
-
-
0026093989
-
Detailed mutational analysis of TAR RNA: Critical spacing between the bulge and loop recognition domains
-
Berkhout, B. and Jeang, K.T. 1991. Detailed mutational analysis of TAR RNA: Critical spacing between the bulge and loop recognition domains. Nucleic Acids Res. 19: 6169-6176.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 6169-6176
-
-
Berkhout, B.1
Jeang, K.T.2
-
7
-
-
0024322804
-
Tat trans-activates the human immunodeficiency virus through a nascent RNA target
-
Berkhout, B., Silverman, R.H., and Jeang, K.T. 1989. Tat trans-activates the human immunodeficiency virus through a nascent RNA target. Cell 59: 273-282.
-
(1989)
Cell
, vol.59
, pp. 273-282
-
-
Berkhout, B.1
Silverman, R.H.2
Jeang, K.T.3
-
8
-
-
0033529211
-
Recruitment of cyclin T1/P-TEFb to an HIV type 1 long terminal repeat promoter proximal RNA target is both necessary and sufficient for full activation of transcription
-
Bieniasz, P.D., Grdina, T.A., Bogerd, H.P., and Cullen, B.R. 1999. Recruitment of cyclin T1/P-TEFb to an HIV type 1 long terminal repeat promoter proximal RNA target is both necessary and sufficient for full activation of transcription. Proc. Natl. Acad. Sci. 96: 7791-7796.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 7791-7796
-
-
Bieniasz, P.D.1
Grdina, T.A.2
Bogerd, H.P.3
Cullen, B.R.4
-
9
-
-
0032522280
-
NMR evidence for a base triple in the HIV-2 TAR C-G.C+ mutant-argininamide complex
-
Brodsky, A.S., Erlacher, H.A., and Williamson, J.R. 1998. NMR evidence for a base triple in the HIV-2 TAR C-G.C+ mutant-argininamide complex. Nucleic Acids Res. 26: 1991-1995.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1991-1995
-
-
Brodsky, A.S.1
Erlacher, H.A.2
Williamson, J.R.3
-
11
-
-
0026350074
-
Arginine-mediated RNA recognition: The arginine fork
-
Calnan, B.J., Tidor, B., Biancalana, S., Hudson, D., and Frankel, A.D. 1991. Arginine-mediated RNA recognition: The arginine fork. Science 252: 1167-1171.
-
(1991)
Science
, vol.252
, pp. 1167-1171
-
-
Calnan, B.J.1
Tidor, B.2
Biancalana, S.3
Hudson, D.4
Frankel, A.D.5
-
12
-
-
0027452957
-
High affinity binding of TAR RNA by the human immunodeficiency virus type-1 tat protein requires base-pairs in the RNA stem and amino acid residues flanking the basic region
-
Churcher, M.J., Lamont, C., Hamy, F., Dingwall, C., Green, S.M., Lowe, A.D., Butler, J.G., Gait, M.J., and Karn, J. 1993. High affinity binding of TAR RNA by the human immunodeficiency virus type-1 tat protein requires base-pairs in the RNA stem and amino acid residues flanking the basic region. J. Mol. Biol. 230: 90-110.
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 90-110
-
-
Churcher, M.J.1
Lamont, C.2
Hamy, F.3
Dingwall, C.4
Green, S.M.5
Lowe, A.D.6
Butler, J.G.7
Gait, M.J.8
Karn, J.9
-
13
-
-
0026575171
-
Unusual structure of the human immunodeficiency virus type 1 trans-activation response element
-
Colvin, R.A. and Garcia-Blanco, M.A. 1992. Unusual structure of the human immunodeficiency virus type 1 trans-activation response element. J. Virol. 66: 930-935.
-
(1992)
J. Virol.
, vol.66
, pp. 930-935
-
-
Colvin, R.A.1
Garcia-Blanco, M.A.2
-
14
-
-
0027610610
-
Modeling and solution structure probing of the HIV-1 TAR stemloop
-
Critchley, A.D., Haneef, I., Cousens, D.J., and Stockley, P.G. 1993. Modeling and solution structure probing of the HIV-1 TAR stemloop. J. Mol. Graph. 11: 92-97.
-
(1993)
J. Mol. Graph.
, vol.11
, pp. 92-97
-
-
Critchley, A.D.1
Haneef, I.2
Cousens, D.J.3
Stockley, P.G.4
-
15
-
-
0034786589
-
Prediction of proton chemical shifts in RNA
-
Cromsigt, J.A.M.T.C., Hilbers, C.W., and Wijmenga, S.S. 2001. Prediction of proton chemical shifts in RNA. J. Biomol. NMR 21: 11-29.
-
(2001)
J. Biomol. NMR
, vol.21
, pp. 11-29
-
-
Cromsigt, J.A.M.T.C.1
Hilbers, C.W.2
Wijmenga, S.S.3
-
16
-
-
0032577444
-
HIV-1 auxiliary proteins: Making connections in a dying cell
-
Cullen, B.R. 1998. HIV-1 auxiliary proteins: Making connections in a dying cell. Cell 93: 685-692.
-
(1998)
Cell
, vol.93
, pp. 685-692
-
-
Cullen, B.R.1
-
17
-
-
0032889526
-
A hairpin structure in the R region of the Human Immunodeficiency Virus type 1 RNA genome is instrumental in polyadenylation site selection
-
Das, A.T., Klaver, B., and Berkhout, B. 1999. A hairpin structure in the R region of the Human Immunodeficiency Virus type 1 RNA genome is instrumental in polyadenylation site selection. J. Virol. 73: 81-91.
-
(1999)
J. Virol.
, vol.73
, pp. 81-91
-
-
Das, A.T.1
Klaver, B.2
Berkhout, B.3
-
18
-
-
0026566568
-
Conserved nucleotides in the TAR RNA stem of human immunodeficiency virus type 1 are critical for Tat binding and trans activation: Model for TAR RNA tertiary structure
-
Delling, U., Reid, L.S., Barnett, R.W., Ma, M.Y., Climie, S., Sumner-Smith, M., and Sonenberg, N. 1992. Conserved nucleotides in the TAR RNA stem of human immunodeficiency virus type 1 are critical for Tat binding and trans activation: Model for TAR RNA tertiary structure. J. Virol. 66: 3018-3025.
-
(1992)
J. Virol.
, vol.66
, pp. 3018-3025
-
-
Delling, U.1
Reid, L.S.2
Barnett, R.W.3
Ma, M.Y.4
Climie, S.5
Sumner-Smith, M.6
Sonenberg, N.7
-
19
-
-
0027468750
-
Quantitation of human immunodeficiency virus type 1 infection kinetics
-
Dimitrov, D.S., Willey, R.L., Sato, H., Chang, L.-J., Blumenthal, R., and Martin, M.A. 1993. Quantitation of human immunodeficiency virus type 1 infection kinetics. J. Virol. 67: 2182-2190.
-
(1993)
J. Virol.
, vol.67
, pp. 2182-2190
-
-
Dimitrov, D.S.1
Willey, R.L.2
Sato, H.3
Chang, L.-J.4
Blumenthal, R.5
Martin, M.A.6
-
20
-
-
0024445417
-
Human Immunodeficiency Virus 1 tat protein binds trans-activating-responsive region (TAR) RNA in vitro
-
Dingwall, C., Ernberg, I., Gait, M.J., Green, S.M., Heaphy, S., Karn, J., Lowe, A.D., Singh, M., Skinner, M.A., and Valerio, R. 1989. Human Immunodeficiency Virus 1 tat protein binds trans-activating-responsive region (TAR) RNA in vitro. Proc. Natl. Acad. Sci. 86: 6925-6929.
-
(1989)
Proc. Natl. Acad. Sci.
, vol.86
, pp. 6925-6929
-
-
Dingwall, C.1
Ernberg, I.2
Gait, M.J.3
Green, S.M.4
Heaphy, S.5
Karn, J.6
Lowe, A.D.7
Singh, M.8
Skinner, M.A.9
Valerio, R.10
-
21
-
-
0025039326
-
HIV-1 tat protein stimulates transcription by binding to a U-rich bulge in the stem of the TAR RNA structure
-
Dingwall, C., Ernberg, I., Gait, M.J., Green, S.M., Heaphy, S., Karn, J., Lowe, A.D., Singh, M., and Skinner, M.A. 1990. HIV-1 tat protein stimulates transcription by binding to a U-rich bulge in the stem of the TAR RNA structure. EMBO J. 9: 4145-4153.
-
(1990)
EMBO J.
, vol.9
, pp. 4145-4153
-
-
Dingwall, C.1
Ernberg, I.2
Gait, M.J.3
Green, S.M.4
Heaphy, S.5
Karn, J.6
Lowe, A.D.7
Singh, M.8
Skinner, M.A.9
-
22
-
-
0023876147
-
HIV-1 tat trans-activation requires the loop sequence within tar
-
Feng, S. and Holland, E.C. 1988. HIV-1 tat trans-activation requires the loop sequence within tar. Nature 334: 165-167.
-
(1988)
Nature
, vol.334
, pp. 165-167
-
-
Feng, S.1
Holland, E.C.2
-
23
-
-
0022470729
-
The trans-activator gene of HTLV-III is essential for virus replication
-
Fisher, A.G., Feinberg, M.B., Josephs, S.F., Harper, M.E., Marselle, L.M., Reyes, G., Gonda, M.A., Aldovini, A., Debouck, C., and Gallo, R.C. 1986. The trans-activator gene of HTLV-III is essential for virus replication. Nature 320: 367-371.
-
(1986)
Nature
, vol.320
, pp. 367-371
-
-
Fisher, A.G.1
Feinberg, M.B.2
Josephs, S.F.3
Harper, M.E.4
Marselle, L.M.5
Reyes, G.6
Gonda, M.A.7
Aldovini, A.8
Debouck, C.9
Gallo, R.C.10
-
24
-
-
0028916219
-
Identification of base-triples in RNA using comparative sequence analysis
-
Gautheret, D., Damberger, S.H., and Gutell, R.R. 1995. Identification of base-triples in RNA using comparative sequence analysis. J. Mol. Biol. 248: 27-43.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 27-43
-
-
Gautheret, D.1
Damberger, S.H.2
Gutell, R.R.3
-
25
-
-
0033740772
-
Coupled nucleotide covariations reveal dynamic RNA interaction patterns
-
Gultyaev, A.P., Franch, T., and Gerdes, K. 2000. Coupled nucleotide covariations reveal dynamic RNA interaction patterns. RNA 6: 1483-1491.
-
(2000)
RNA
, vol.6
, pp. 1483-1491
-
-
Gultyaev, A.P.1
Franch, T.2
Gerdes, K.3
-
26
-
-
0035812603
-
HIV-1 nucleocapsid protein zinc finger structures induce tRNA(Lys,3) structural changes but are not critical for primer/template annealing
-
Hargittai, M.R., Mangla, A.T., Gorelick, R.J., and Musier-Forsyth, K. 2001. HIV-1 nucleocapsid protein zinc finger structures induce tRNA(Lys,3) structural changes but are not critical for primer/template annealing. J. Mol. Biol. 312: 985-997.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 985-997
-
-
Hargittai, M.R.1
Mangla, A.T.2
Gorelick, R.J.3
Musier-Forsyth, K.4
-
27
-
-
0025871656
-
Refolded HIV-1 tat protein protects both bulge and loop nucleotides in TAR RNA from ribonucleolytic cleavage
-
Harper, J.W. and Logsdon, N.J. 1991. Refolded HIV-1 tat protein protects both bulge and loop nucleotides in TAR RNA from ribonucleolytic cleavage. Biochemistry 30: 8060-8066.
-
(1991)
Biochemistry
, vol.30
, pp. 8060-8066
-
-
Harper, J.W.1
Logsdon, N.J.2
-
28
-
-
0034176994
-
Detection of N-H...N hydrogen bonding in RNA via scalar couplings in the absence of observable imino proton resonances
-
Hennig, M. and Williamson, J.R. 2000. Detection of N-H...N hydrogen bonding in RNA via scalar couplings in the absence of observable imino proton resonances. Nucleic Acids Res. 28: 1585-1593.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1585-1593
-
-
Hennig, M.1
Williamson, J.R.2
-
29
-
-
0033557332
-
Visualizing tertiary folding of RNA and RNA-protein interactions by a tethered iron chelate: Analysis of HIV-1 Tat-TAR complex
-
Huq, I., Tamilarasu, N., and Rana, T.M. 1999. Visualizing tertiary folding of RNA and RNA-protein interactions by a tethered iron chelate: Analysis of HIV-1 Tat-TAR complex. Nucleic Acids Res. 27: 1084-1093.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1084-1093
-
-
Huq, I.1
Tamilarasu, N.2
Rana, T.M.3
-
30
-
-
0035038089
-
Two alternating structures for the HIV-1 leader RNA
-
Huthoff, H. and Berkhout, B. 2001. Two alternating structures for the HIV-1 leader RNA. RNA 7: 143-157.
-
(2001)
RNA
, vol.7
, pp. 143-157
-
-
Huthoff, H.1
Berkhout, B.2
-
31
-
-
0032543957
-
A 1.3-Å resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation
-
Ippolito, J.A. and Steitz, T.A. 1998. A 1.3-Å resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation. Proc. Natl. Acad. Sci. USA 95: 9819-9824.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9819-9824
-
-
Ippolito, J.A.1
Steitz, T.A.2
-
32
-
-
0027444622
-
An NMR study of the HIV-1 TAR element hairpin
-
Jaeger, J.A. and Tinoco Jr., I., 1993. An NMR study of the HIV-1 TAR element hairpin. Biochemistry 32: 12522-12530.
-
(1993)
Biochemistry
, vol.32
, pp. 12522-12530
-
-
Jaeger, J.A.1
Tinoco Jr., I.2
-
33
-
-
0034030611
-
Functional differences between the LTR transcriptional promoters of HIV-1 subtypes A through G
-
Jeeninga, R.E., Hoogenkamp, M., Armand-Ugon, M., de Baar, M., Verhoef, K., and Berkhout, B. 2000. Functional differences between the LTR transcriptional promoters of HIV-1 subtypes A through G. J. Virol. 74: 3740-3751.
-
(2000)
J. Virol.
, vol.74
, pp. 3740-3751
-
-
Jeeninga, R.E.1
Hoogenkamp, M.2
Armand-Ugon, M.3
De Baar, M.4
Verhoef, K.5
Berkhout, B.6
-
34
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., Billeter, M., and Wuthrich, K. 1996. MOLMOL: A program for display and analysis of macromolecular structures. J. Mol. Graph. 14: 51-32.
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 51-32
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
-
35
-
-
0141643186
-
The apical loop of the HIV-1 TAR RNA hairpin is stabilized by a cross-loop base pair
-
Kulinski, T., Olejniczak, M., Huthoff, H., Bielecki, L., Pachulska-Wieczorek, K., Das, A.T., Berkhout, B., and Adamiak, R.W. 2003. The apical loop of the HIV-1 TAR RNA hairpin is stabilized by a cross-loop base pair. J. Biol. Chem. 278: 38892-38901.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 38892-38901
-
-
Kulinski, T.1
Olejniczak, M.2
Huthoff, H.3
Bielecki, L.4
Pachulska-Wieczorek, K.5
Das, A.T.6
Berkhout, B.7
Adamiak, R.W.8
-
36
-
-
0033520106
-
Characterization of the solution conformations of unbound and Tat peptide-bound forms of HIV-1 TAR RNA
-
Long, K.S. and Crothers, D.M. 1999. Characterization of the solution conformations of unbound and Tat peptide-bound forms of HIV-1 TAR RNA. Biochemistry 38: 10059-10069.
-
(1999)
Biochemistry
, vol.38
, pp. 10059-10069
-
-
Long, K.S.1
Crothers, D.M.2
-
37
-
-
0037373493
-
A functional genetic approach suggests a novel interaction between the human immunodeficiency virus type 1 (HIV-1) Tat protein and HIV-1 TAR RNA in vivo
-
Lund, L.H., Wahren, B., and Garcia-Blanco, M.A. 2003. A functional genetic approach suggests a novel interaction between the human immunodeficiency virus type 1 (HIV-1) Tat protein and HIV-1 TAR RNA in vivo. J. Gen. Virol. 84: 603-606.
-
(2003)
J. Gen. Virol.
, vol.84
, pp. 603-606
-
-
Lund, L.H.1
Wahren, B.2
Garcia-Blanco, M.A.3
-
38
-
-
0026064723
-
HIV-1 Tat protein promotes formation of more-processive elongation complexes
-
Marciniak, R.A. and Sharp, P.A. 1991. HIV-1 Tat protein promotes formation of more-processive elongation complexes. EMBO J. 10: 4189-4196.
-
(1991)
EMBO J.
, vol.10
, pp. 4189-4196
-
-
Marciniak, R.A.1
Sharp, P.A.2
-
39
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews, D.H., Sabina, J., Zuker, M., and Turner, D.H. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288: 911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
40
-
-
0023614254
-
Regulation of mRNA accumulation by a human immunodeficiency virus transactivator protein
-
Muesing, M.A., Smith, D.H., and Capon, D.J. 1987. Regulation of mRNA accumulation by a human immunodeficiency virus transactivator protein. Cell 48: 691-701.
-
(1987)
Cell
, vol.48
, pp. 691-701
-
-
Muesing, M.A.1
Smith, D.H.2
Capon, D.J.3
-
41
-
-
0034671676
-
Molecular dynamics studies of the HIV-1 TAR and its complex with argininamide
-
Nifosi, R., Reyes, C.M., and Kollman, P.A. 2000. Molecular dynamics studies of the HIV-1 TAR and its complex with argininamide. Nucleic Acids Res. 28: 4944-4955.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4944-4955
-
-
Nifosi, R.1
Reyes, C.M.2
Kollman, P.A.3
-
42
-
-
0036798069
-
The bulge region of HIV-1 TAR RNA binds metal ions in solution
-
Olejniczak, M., Gdaniec, Z., Fischer, A., Grabarkiewicz, T., Bielecki, L., and Adamiak, R.W. 2002. The bulge region of HIV-1 TAR RNA binds metal ions in solution. Nucleic Acids Res. 30: 4241-4249.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4241-4249
-
-
Olejniczak, M.1
Gdaniec, Z.2
Fischer, A.3
Grabarkiewicz, T.4
Bielecki, L.5
Adamiak, R.W.6
-
43
-
-
0029956642
-
Enhanced processivity of RNA polymerase II triggered by Tat-induced phosphorylation of its carboxy-terminal domain
-
Parada, C.A. and Roeder, R.G. 1996. Enhanced processivity of RNA polymerase II triggered by Tat-induced phosphorylation of its carboxy-terminal domain. Nature 384: 375-378.
-
(1996)
Nature
, vol.384
, pp. 375-378
-
-
Parada, C.A.1
Roeder, R.G.2
-
44
-
-
0026651395
-
Conformation of the TAR RNA-arginine complex by NMR spectroscopy
-
Puglisi, J.D., Tan, R., Calnan, B.J., Frankel, A.D., and Williamson, J.R. 1992. Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science 257: 76-80.
-
(1992)
Science
, vol.257
, pp. 76-80
-
-
Puglisi, J.D.1
Tan, R.2
Calnan, B.J.3
Frankel, A.D.4
Williamson, J.R.5
-
45
-
-
0027466447
-
Role of RNA structure in arginine recognition of TAR RNA
-
Puglisi, J.D., Chen, L., Frankel, A.D., and Williamson, J.R. 1993. Role of RNA structure in arginine recognition of TAR RNA. Proc. Natl. Acad. Sci. 90: 3680-3684.
-
(1993)
Proc. Natl. Acad. Sci.
, vol.90
, pp. 3680-3684
-
-
Puglisi, J.D.1
Chen, L.2
Frankel, A.D.3
Williamson, J.R.4
-
46
-
-
0037150091
-
Specific HIV-1 TAR RNA loop sequence and functional groups are required for human cyclin T1-Tat-TAR ternary complex formation
-
Richter, S., Cao, H., and Rana, T.M. 2002a. Specific HIV-1 TAR RNA loop sequence and functional groups are required for human cyclin T1-Tat-TAR ternary complex formation. Biochemistry 41: 6391-6397.
-
(2002)
Biochemistry
, vol.41
, pp. 6391-6397
-
-
Richter, S.1
Cao, H.2
Rana, T.M.3
-
47
-
-
0037062495
-
TAR RNA loop: A scaffold for the assembly of a regulatory switch in HIV replication
-
Richter, S., Ping, Y.H., and Rana, T.M. 2002b. TAR RNA loop: A scaffold for the assembly of a regulatory switch in HIV replication. Proc. Natl. Acad. Sci. 99: 7928-7933.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 7928-7933
-
-
Richter, S.1
Ping, Y.H.2
Rana, T.M.3
-
48
-
-
0025162336
-
A bulge structure in HIV-1 TAR RNA is required for Tat binding and Tat-mediated trans-activation
-
Roy, S., Delling, U., Chen, C.H., Rosen, C.A., and Sonenberg, N. 1990. A bulge structure in HIV-1 TAR RNA is required for Tat binding and Tat-mediated trans-activation. Genes & Dev. 4: 1365-1373.
-
(1990)
Genes & Dev.
, vol.4
, pp. 1365-1373
-
-
Roy, S.1
Delling, U.2
Chen, C.H.3
Rosen, C.A.4
Sonenberg, N.5
-
49
-
-
0025943173
-
Critical chemical features in trans-acting-responsive RNA are required for interaction with human immunodeficiency virus type 1 Tat protein
-
Sumner-Smith, M., Roy, S., Barnett, R., Reid, L.S., Kuperman, R., Delling, U., and Sonenberg, N. 1991. Critical chemical features in trans-acting-responsive RNA are required for interaction with human immunodeficiency virus type 1 Tat protein. J. Virol. 65: 5196-5202.
-
(1991)
J. Virol.
, vol.65
, pp. 5196-5202
-
-
Sumner-Smith, M.1
Roy, S.2
Barnett, R.3
Reid, L.S.4
Kuperman, R.5
Delling, U.6
Sonenberg, N.7
-
50
-
-
0030866522
-
Mutagenesis and comparative sequence analysis of a base triple joining the two domains of group I ribozymes
-
Tanner, M.A., Anderson, E.M., Gutell, R.R., and Cech, T.R. 1997. Mutagenesis and comparative sequence analysis of a base triple joining the two domains of group I ribozymes. RNA 3: 1037-1051.
-
(1997)
RNA
, vol.3
, pp. 1037-1051
-
-
Tanner, M.A.1
Anderson, E.M.2
Gutell, R.R.3
Cech, T.R.4
-
51
-
-
0026589545
-
Specific binding of arginine to TAR RNA
-
Tao, J. and Frankel, A.D. 1992. Specific binding of arginine to TAR RNA. Proc. Natl. Acad. Sci. 89: 2723-2726.
-
(1992)
Proc. Natl. Acad. Sci.
, vol.89
, pp. 2723-2726
-
-
Tao, J.1
Frankel, A.D.2
-
52
-
-
0030703134
-
Determination of the minimal amount of Tat activity required for human immunodeficiency virus type 1 replication
-
Verhoef, K., Koper, M., and Berkhout, B. 1997. Determination of the minimal amount of Tat activity required for human immunodeficiency virus type 1 replication. Virology 237: 228-236.
-
(1997)
Virology
, vol.237
, pp. 228-236
-
-
Verhoef, K.1
Koper, M.2
Berkhout, B.3
-
53
-
-
0033137013
-
Proximity of a Tat peptide to the HIV-1 TAR RNA loop region determined by site-specific photo-cross-linking
-
Wang, Z., Huq, I., and Rana, T.M. 1999. Proximity of a Tat peptide to the HIV-1 TAR RNA loop region determined by site-specific photo-cross-linking. Bioconjug. Chem. 10: 512-519.
-
(1999)
Bioconjug. Chem.
, vol.10
, pp. 512-519
-
-
Wang, Z.1
Huq, I.2
Rana, T.M.3
-
54
-
-
0025996720
-
RNA recognition by Tat-derived peptides: Interaction in the major groove
-
Weeks, K.M. and Crothers, D.M. 1991. RNA recognition by Tat-derived peptides: Interaction in the major groove. Cell 66: 577-588.
-
(1991)
Cell
, vol.66
, pp. 577-588
-
-
Weeks, K.M.1
Crothers, D.M.2
-
55
-
-
0026497842
-
RNA binding assays for Tat-derived peptides: Implications for specificity
-
-. 1992. RNA binding assays for Tat-derived peptides: Implications for specificity. Biochemistry 31: 10281-10287.
-
(1992)
Biochemistry
, vol.31
, pp. 10281-10287
-
-
-
56
-
-
0025168740
-
Fragments of the HIV-1 Tat protein specifically bind TAR RNA
-
Weeks, K.M., Ampe, C., Schultz, S.C., Steitz, T.A., and Crothers, D.M. 1990. Fragments of the HIV-1 Tat protein specifically bind TAR RNA. Science 249: 1281-1285.
-
(1990)
Science
, vol.249
, pp. 1281-1285
-
-
Weeks, K.M.1
Ampe, C.2
Schultz, S.C.3
Steitz, T.A.4
Crothers, D.M.5
-
57
-
-
0032548918
-
A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA
-
Wei, P., Garber, M.E., Fang, S.-M., Fisher, W.H., and Jones, K.A. 1998. A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA. Cell 92: 451-462.
-
(1998)
Cell
, vol.92
, pp. 451-462
-
-
Wei, P.1
Garber, M.E.2
Fang, S.-M.3
Fisher, W.H.4
Jones, K.A.5
-
58
-
-
0000321069
-
Analysis of H-1 chemical shifts in DNA: Assessment of the reliability of H-1 chemical shift calculations for use in structure refinement
-
Wijmenga, S.S., Kruithof, M., and Hilbers, C.W. 1997. Analysis of H-1 chemical shifts in DNA: Assessment of the reliability of H-1 chemical shift calculations for use in structure refinement. J. Biomol. NMR 10: 337-350.
-
(1997)
J. Biomol. NMR
, vol.10
, pp. 337-350
-
-
Wijmenga, S.S.1
Kruithof, M.2
Hilbers, C.W.3
-
59
-
-
0029032837
-
The bend in RNA created by the trans-activation response element bulge of human immunodeficiency virus is straightened by arginine and by Tat-derived peptide
-
Zacharias, M. and Hagerman, P.J. 1995. The bend in RNA created by the trans-activation response element bulge of human immunodeficiency virus is straightened by arginine and by Tat-derived peptide. Proc. Natl. Acad. Sci. 92: 6052-6056.
-
(1995)
Proc. Natl. Acad. Sci.
, vol.92
, pp. 6052-6056
-
-
Zacharias, M.1
Hagerman, P.J.2
-
60
-
-
0024477261
-
On finding all suboptimal foldings of an RNA molecule
-
Zuker, M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244: 48-52.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zuker, M.1
-
61
-
-
0002287019
-
Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
-
(eds. J. Barciszewski and B.F.C. Clark). Kluwer Academic Publishers, Dordrecht/Boston/London
-
Zuker, M. and Turner, D.H. 1999. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide. In RNA biochemistry and biotechnology (eds. J. Barciszewski and B.F.C. Clark), pp. 11-43. Kluwer Academic Publishers, Dordrecht/Boston/London.
-
(1999)
RNA Biochemistry and Biotechnology
, pp. 11-43
-
-
Zuker, M.1
Turner, D.H.2
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