Pseudomonas syringae pv. phaseolicola can be separated into two genetic lineages distinguished by the possession of the phaseolotoxin biosynthetic cluster

Microbiology

Volumn 150, Issue 2, 2004, Pages 473-482

  Oguiza, José A ^a   Rico, Arantza ^a   Rivas, Luis A ^a   Sutra, Laurent ^b   Vivian, Alan ^c   Murillo, Jesús ^a  

^a PUBLIC UNIVERSITY OF NAVARRE   (Spain)

^b CEMAGREF   (France)

^c UNIVERSITY OF THE WEST OF ENGLAND   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL TOXIN; PHASEOLOTOXIN; RIBOSOME DNA; SPACER DNA; UNCLASSIFIED DRUG;

ARTICLE; BACTERIUM ISOLATE; BIOSYNTHESIS; CHROMOSOME INSERTION; CONTROLLED STUDY; DNA HYBRIDIZATION; DNA SEQUENCE; GENE AMPLIFICATION; GENE CLUSTER; GENE INSERTION; GENETIC COMPLEMENTATION; GENETIC DIFFERENCE; GENETIC LINE; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; HETERODUPLEX ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PATHOGENICITY ISLAND; PLASMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PSEUDOMONAS SYRINGAE; SEQUENCE ANALYSIS; SOYBEAN;

BACTERIA (MICROORGANISMS); GLYCINE MAX; INSERTION SEQUENCES; NEGIBACTERIA; PHASEOLUS; PHASEOLUS (ANGIOSPERM); PROKARYOTA; PSEUDOMONAS; PSEUDOMONAS SYRINGAE; PSEUDOMONAS SYRINGAE PV. GLYCINEA; PSEUDOMONAS SYRINGAE PV. PHASEOLICOLA;

EID: 1242341328     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.26635-0     Document Type: Article

References (53)

1. Alfano, J. R., Charkowski, A. O., Deng, W.-L., Bade[, J. L., Petnicki-Ocwieja, T., van Dijk, K. & Collmer, A. (2000). The Pseudomonas syringae Hrp pathogenicity island has a tripartite mosaic structure composed of a cluster of type III secretion genes bounded by exchangeable effector and conserved effector loci that contribute to parasitic fitness and pathogenicity in plants. Proc Natl Acad Sci U S A 97, 4856-4861.
2. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
3. Catara, V., Sutra, L., Morineau, A., Achouak, W., Christen, R. & Gardan, L. (2002). Phenotypic and genomic evidence for the revision of Pseudomonas corrugata and proposal of Pseudomonas mediterranea sp. nov. Int J Syst Evol Microbiol 52, 1749-1758.
4. Charity, J. C., Pak, K., Delwiche, C. F. & Hutcheson, S. W. (2003). Novel exchangeable effector loci associated with the Pseudomonas syringae hrp pathogenicity island: evidence for integron-like assembly from transposed gene cassettes. Mol Plant-Microbe Interact 16, 495-507.
5. de la Fuente-Martinez, J. M., Mosqueda-Cano, G., Alvarez-Morales, A. & Herrera-Estrella, L. (1992). Expression of a bacterial phaseolotoxin-resistant ornithyl transcarbamylase in transgenic tobacco confers resistance to Pseudomonas syringae pv. phaseolicola. Biotechnology 10, 905-909.
6. Delwart, E. L., Shpaer, E. G., Louwagie, J., McCutchan, F. E., Grez, M., Rubsamen-Waigmann, H. & Mullins, J. I. (1993). Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 env genes. Science 262, 1257-1261.
7. Deng, W.-L., Rehm, A. H., Charkowski, A. O., Rojas, C. M. & Collmer, A. (2003). Pseudomonas syringae exchangeable effector loci: sequence diversity in representative pathovars and virulence function in P. syringae pv. syringae B728a. J Bacteriol 185, 2592-2602.
8. Gardan, L., Shafik, H., Belouin, S., Broch, R., Grimont, F. & Grimont, P. A. D. (1999). DNA relatedness among the pathovars of Pseudomonas syringae and description of Pseudomonas tremae sp. nov. and Pseudomonas cannabina sp. nov. (ex Sutic and Dowson 1959). Int J Syst Bacteriol 49, 469-478.
9. González, A. I., Ruiz, M. L. & Polanco, C. (1998). A race-specific insertion of transposable element IS801 in Pseudomonas syringae pv. phaseolicola. Mol Plant-Microbe Interact 11, 423-428.
10. González, A. J., Landeras, E. & Mendoza, M. C. (2000). Pathovars of Pseudomonas syringae causing bacterial brown spot and halo blight in Phaseolus vulgaris L. are distinguishable by ribotyping. Appl Environ Microbiol 66, 850-854.
11. Goto, M. & Hyodo, H. (1987). Ethylene production by cell-free extract of the kudzu strains of Pseudomonas syringae pv. phaseolicola. Plant Cell Physiol 28, 405-414.
12. Gurtler, V. & Stanisich, V. A. (1996). New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology 142, 3-16.
13. Hernández-Guzmán, G. & Alvarez-Morales, A. (2001). Isolation and characterization of the gene coding for the amidinotransferase involved in the biosynthesis of phaseolotoxin in Pseudomonas syringae pv. phaseolicola. Mol Plant-Microbe Interact 14, 545-554.
14. Jackson, R. W., Athanassopoulos, E., Tsiamis, G. & 7 other authors (1999). Identification of a pathogenicity island, which contains genes for virulence and avirulence, on a large native plasmid in the bean pathogen Pseudomonas syringae pathovar phaseolicola. Proc Natl Acad Sci U S A 96, 10875-10880.
15. Jackson, R. W., Mansfield, J. W., Ammouneh, H. & 13 other authors (2002). Location and activity of members of a family of virPphA homologues in pathovars of Pseudomonas syringae and P. savastanoi. Mol Plant Pathol 3, 205-216.
16. King, E. O., Ward, N. K. & Raney, D. E. (1954). Two simple media for the demonstration of pyocyanin and fluorescein. J Lab Clin Med 44, 301-307.
17. Little, E. L., Bostock, R. M. & Kirkpatrick, B. C. (1998). Genetic characterization of Pseudomonas syringae pv. syringae strains from stone fruits in California. Appl Environ Microbiol 64, 3818-3823.
18. Louws, F. J., Fullbright, D. W., Stephens, C. T. & de Bruijn, F. J. (1994). Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strains generated with repetitive sequences and PCR. Appl Environ Microbiol 60, 2286-2295.
19. Manceau, C. & Horvais, A. (1997). Assessment of genetic diversity among strains of Pseudomonas syringae by PCR-restriction fragment length polymorphism analysis of rRNA operons with special emphasis on P. syringae pv. tomato. Appl Environ Microbiol 63, 498-505.
20. Marques, A. S. dos A., Corbière, R., Gardan, L., Tourte, C., Manceau, C., Taylor, J. D. & Samson, R. (2000). Multiphasic approach for the identification of the different classification levels of Pseudomonas savastanoi pv. phaseolicola. Eur J Plant Pathol 106, 715-734.
21. McManus, P. S. & Jones, A. L. (1995). Genetic fingerprinting of Erwinia amylovora strains isolated from tree-fruit crops and Rubus spp. Phytopathology 85, 1547-1553.
22. Mendiola, M. V., Bernales, I. & de la Cruz, F. (1994). Differential roles of the transposon termini in IS91 transposition. Proc Natl Acad Sci U S A 91, 1922-1926.
23. Mitchell, R. E. (1978). Halo blight of beans: toxin production by several Pseudomonas phaseolicola isolates. Physiol Plant Pathol 13, 37-49.
24. Murillo, J., Shen, H., Gerhold, D., Sharma, A. K., Cooksey, D. A. & Keen, N. T. (1994). Characterization of pPT23B, the plasmid involved in syringolide production by Pseudomonas syringae pv. tomato PT23. Plasmid 31, 275-287.
25. Nagahama, K., Yoshino, K., Matsuloa, M., Sato, M., Tanase, S., Ogawa, T. & Fukuda, H. (1994). Ethylene production by strains of the plant-pathogenic bacterium Pseudomonas syringae depends upon the presence of indigenous plasmids carrying homologous genes for the ethylene-forming enzyme. Microbiology 140, 2309-2313.
26. Palleroni, N. J. (1984). Genus I. Pseudomonas. In Bergey's Manual of Systematic Bacteriology, pp. 141-199. Edited by N. R. Krieg & J. G. Holt. Baltimore, MD: Williams & Wilkins.
27. Patil, S. S., Hayward, A. C. & Emmons, R. (1974). An ultraviolet-induced non-toxigenic mutant of Pseudomonas phaseolicola of altered pathogenicity. Phytopathology 64, 590-595.
28. Richter, G. Y., Björklöf, K., Romantschuk, M. & Mills, D. (1998). Insertion specificity and trans-activation of IS801. Mol Gen Genet 260, 381-387.
29. Rico, A., López, R., Asensio, C., Aizpún, M., Asensio-S.-Manzanera, C. & Murillo, J. (2003). Nontoxigenic strains of P. syringae pv. phaseolicola are a main cause of halo blight of beans in Spain and escape current detection methods. Phytopathology 93, 1553-1559.
30. Rohlf, F. J. (1993). NTSYS-PC Numerical Taxonomy and Multivariate Analysis System. Version 1.8. Setauket, NY: Exeter Publishing Ltd.
31. Romantschuk, M., Zhao, Y., McCluskey, K., Williams, J. & Mills, D. (1990). Repeated sequences in Pseudomonas syringae pv. phaseolicola; distribution and possible function as insertion sequences. Symbiosis 8, 21-31.
32. Romantschuk, M., Richter, G. Y., Mukhopadhyay, P. & Mills, D. (1991). IS801, an insertion sequence element isolated from Pseudomonas syringae pathovar phaseolicola. Mol Microbiol 5, 617-622.
33. Rudolph, K. W. E. (1995). Pseudomonas syringae pathovars. In Pathogenesis and Host Specificity in Plant Diseases, pp. 47-138. Edited by U. S. Singh, R. P. Singh & K. Kohmoto. Oxford: Elsevier.
34. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
35. Sawada, H., Takeuchi, T. & Matsuda, I. (1997). Comparative analysis of Pseudomonas syringae pv. actinidiae and pv. phaseolicola based on phaseolotoxin-resistant ornithine carbamoyltransferase gene (argK) and 16S-23S rRNA intergenic spacer sequences. Appl Environ Microbiol 63, 282-288.
36. Sawada, H., Suzuki, F., Matsuda, I. & Saitou, N. (1999). Phylogenetic analysis of Pseudomonas syringae pathovars suggests the horizontal gene transfer of argK and the evolutionary stability of hrp gene cluster. J Mol Evol 49, 627-644.
37. Sawada, H., Kanaya, S., Tsuda, M., Suzuki, F., Azegami, K. & Saitou, N. (2002). A phylogenomic study of the OCTase genes in Pseudomonas syringae pathovars: the horizontal transfer of the argK-tox cluster and the evolutionary history of OCTase genes on their genomes. J Mol Evol 54, 437-457.
38. Schaad, N. W., Cheong, S. S., Tamaki, S., Hatziloukas, E. & Panopoulos, N. J. (1995). A combined biological and enzymatic amplification (BIO-PCR) technique to detect Pseudomonas syringae pv. phaseolicola in bean seed extracts. Phytopathology 85, 243-248.
39. Stevens, C., Bennett, M. A., Athanassopoulos, E., Tsiamis, G., Taylor, J. D. & Mansfield, J. W. (1998). Sequence variations in alleles of the avirulence gene avrPphE.R2 from Pseudomonas syringae pv. phaseolicola lead to loss of recognition of the AvrPphE protein within bean cells and a gain in cultivar-specific virulence. Mol Microbiol 29, 165-177.
40. Sundin, G. W. & Murillo, J. (1999). Functional analysis of the Pseudomonas syringae rulAB determinant in tolerance to ultraviolet B (290-320 nm) radiation and distribution of rulAB among P. syringae pathovars. Environ Microbiol 1, 75-88.
41. Sundin, G. W., Demezas, D. H. & Bender, C. L. (1994). Genetic and plasmid diversity within natural populations of Pseudomonas syringae with various exposures to copper and streptomycin bactericides. Appl Environ Microbiol 60, 4421-4431.
42. Sutra, L., Bonneau, S., Hardy, S. & Gardan, L. (2001). Assessment of the genetic diversity of Pseudomonas syringae group using a DNA heteroduplex mobility assay performed on the internal transcribed spacer (ITS). In 11th Congress of the Mediterranean Phytopathological Union, pp. 13-15. Evora, Portugal.
43. Tamura, K., Imamura, M., Yoneyama, K., Kohno, Y., Takikawa, Y., Yamaguchi, I. & Takahashi, H. (2002). Role of phaseolotoxin production by Pseudomonas syringae pv. actinidiae in the formation of halo lesions of kiwifruit canker disease. Physiol Mol Plant Pathol 60, 207-214.
44. Taylor, J. D., Teverson, D. M., Allen, D. J. & Pastor-Corrales, M. A. (1996). Identification and origin of races of Pseudomonas syringae pv. phaseolicola from Africa and other bean growing areas. Plant Pathol 45, 469-478.
45. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
46. Tourte, C. & Manceau, C. (1995). A strain of Pseudomonas syringae which does not belong to pathovar phaseolicola produces phaseolotoxin. Eur J Plant Pathol 101, 483-490.
47. Tsiamis, G., Mansfield, J. W., Hockenhull, R. & 8 other authors (2000). Cultivar specific avirulence and virulence functions assigned to avrPphF in Pseudomonas syringae pv. phaseolicola, the cause of bean halo-blight disease. EMBO J 19, 3204-3214.
48. Völksch, B. & Weingart, H. (1997). Comparison of ethylene-producing Pseudomonas syringae strains isolated from kudzu (Pueraria lobata) with Pseudomonas syringae pv. phaseolicola and Pseudomonas syringae pv. glycinea. Eur J Plant Pathol 103, 795-802.
49. Völksch, B. & Weingart, H. (1998). Toxin production by pathovars of Pseudomonas syringae and their antagonistic activities against epiphytic microorganisms. J Basic Microbiol 38, 135-145.
50. Yamamoto, S., Kasai, H., Arnold, D. L., Jackson, R. W., Vivian, A. & Harayama, S. (2000). Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146, 2385-2394.
51. Yucel, I., Slaymaker, D., Boyd, C., Murillo, J., Buzzell, R. I. & Keen, N. T. (1994). Avirulence gene avrPphC from Pseudomonas syringae pv. phaseolicola 3121: a plasmid-borne homologue of avrC closely linked to an avrD allele. Mol Plant-Microbe Interact 7, 677-679.
52. Zhang, Y. X. & Patil, S. S. (1997). The phtE locus in the phaseolotoxin gene cluster has ORFs with homologies to genes encoding amino acid transferases, the AraC family of transcriptional factors, and fatty acid desaturases. Mol Plant-Microbe Interact 10, 947-960.
53. Zhou, C., Yang, Y. & Jong, A. Y. (1990). Miniprep in ten minutes. Biotechniques 8, 172-173.