-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0031718525
-
Displacement of OmpF loop 3 is not required for the membrane translocation of colicins N and A in vivo
-
Bainbridge, G., Armstrong, G.A., Dover, L.G., Whelan, K.F., and Lakey, J.H. (1998) Displacement of OmpF loop 3 is not required for the membrane translocation of colicins N and A in vivo. FEBS Lett 432: 117-122.
-
(1998)
FEBS Lett
, vol.432
, pp. 117-122
-
-
Bainbridge, G.1
Armstrong, G.A.2
Dover, L.G.3
Whelan, K.F.4
Lakey, J.H.5
-
3
-
-
0034888050
-
Mutations in the Escherichia coli receptor FepA reveal residues involved in ligand binding and transport
-
Barnard, T.J., Watson, M.E.J., and McIntosh, M.A. (2001) Mutations in the Escherichia coli receptor FepA reveal residues involved in ligand binding and transport. Mol Microbiol 41: 527-536.
-
(2001)
Mol Microbiol
, vol.41
, pp. 527-536
-
-
Barnard, T.J.1
Watson, M.E.J.2
McIntosh, M.A.3
-
4
-
-
0026541379
-
Colicin A unfolds during its translocation in Escherichia coli cells and spans the whole cell envelope when its pore has formed
-
Benedetti, H., Lloubes, R., Lazdunski, C., and Letellier, L. (1992) Colicin A unfolds during its translocation in Escherichia coli cells and spans the whole cell envelope when its pore has formed. EMBO J 11: 441-447.
-
(1992)
EMBO J
, vol.11
, pp. 441-447
-
-
Benedetti, H.1
Lloubes, R.2
Lazdunski, C.3
Letellier, L.4
-
5
-
-
0042838110
-
In vivo reconstitution of the FhuA transport protein of Escherichia coli K-12
-
Braun, M., Endriss, F., Killmann, H., and Braun, V. (2003) In vivo reconstitution of the FhuA transport protein of Escherichia coli K-12. J Bacteriol 85: 5508-5518.
-
(2003)
J Bacteriol
, vol.85
, pp. 5508-5518
-
-
Braun, M.1
Endriss, F.2
Killmann, H.3
Braun, V.4
-
6
-
-
0028325274
-
Colicins - Structures, modes of action, transfer through membranes, and evolution
-
Braun, V., Pilsl, H., and Gross, P. (1994) Colicins - structures, modes of action, transfer through membranes, and evolution. Arch Microbiol 161: 199-206.
-
(1994)
Arch Microbiol
, vol.161
, pp. 199-206
-
-
Braun, V.1
Pilsl, H.2
Gross, P.3
-
7
-
-
0036589164
-
Ton-dependent colicins and microcins: Modular design and evolution
-
Braun, V., Patzer, S.I., and Hantke, K. (2002) Ton-dependent colicins and microcins: modular design and evolution. Biochimie 84: 365-380.
-
(2002)
Biochimie
, vol.84
, pp. 365-380
-
-
Braun, V.1
Patzer, S.I.2
Hantke, K.3
-
9
-
-
0032900438
-
Crystal structure of the outer membrane active transporter FepA from Escherichia coli
-
Buchanan, S.K., Smith, B.S., Venkatramani, L., Xia, D., Esser, L., Palnitkar, M., et al. (1999) Crystal structure of the outer membrane active transporter FepA from Escherichia coli. Nature Struct Biol 6: 56-63.
-
(1999)
Nature Struct Biol
, vol.6
, pp. 56-63
-
-
Buchanan, S.K.1
Smith, B.S.2
Venkatramani, L.3
Xia, D.4
Esser, L.5
Palnitkar, M.6
-
10
-
-
0031442301
-
Interaction with a lipid membrane: A key step in bacterial toxins virulence
-
Cabiaux, V., Wolff, C., and Ruysschaert, J.-M. (1997) Interaction with a lipid membrane: a key step in bacterial toxins virulence. Int J Biol Macromol 21: 285-298.
-
(1997)
Int J Biol Macromol
, vol.21
, pp. 285-298
-
-
Cabiaux, V.1
Wolff, C.2
Ruysschaert, J.-M.3
-
11
-
-
0036589207
-
Mechanisms of colicin binding and transport through outer membrane porins
-
Cao, Z., and Klebba, P.E. (2002) Mechanisms of colicin binding and transport through outer membrane porins. Biochimie 84: 399-412.
-
(2002)
Biochimie
, vol.84
, pp. 399-412
-
-
Cao, Z.1
Klebba, P.E.2
-
12
-
-
0242670022
-
Substrate-induced transmembrane signaling in the cobalamin transporter BtuB
-
Chimento, D.P., Mohanty, A.K., Kadner, R.J., and Wiener, M.C. (2003) Substrate-induced transmembrane signaling in the cobalamin transporter BtuB. Nature Struct Biol 10: 394-401.
-
(2003)
Nature Struct Biol
, vol.10
, pp. 394-401
-
-
Chimento, D.P.1
Mohanty, A.K.2
Kadner, R.J.3
Wiener, M.C.4
-
13
-
-
0015694445
-
Transport of vitamin B12 in Escherichia coli: Common receptor sites for vitamin B12 and the E colicins on the outer membrane of the cell envelope
-
Di Masi, D.R., White, J.C., Schnaitman, C.A., and Bradbeer, C. (1973) Transport of vitamin B12 in Escherichia coli: common receptor sites for vitamin B12 and the E colicins on the outer membrane of the cell envelope. J Bacteriol 115: 506-513.
-
(1973)
J Bacteriol
, vol.115
, pp. 506-513
-
-
Di Masi, D.R.1
White, J.C.2
Schnaitman, C.A.3
Bradbeer, C.4
-
14
-
-
0031569354
-
A mechanism for toxin insertion into membranes is suggested by the crystal structure of the channel-forming domain of colicin E1
-
Elkins, P., Bunker, A., Cramer, W.A., and Stauffacher, C.V. (1997) A mechanism for toxin insertion into membranes is suggested by the crystal structure of the channel-forming domain of colicin E1. Structure 5: 443-458.
-
(1997)
Structure
, vol.5
, pp. 443-458
-
-
Elkins, P.1
Bunker, A.2
Cramer, W.A.3
Stauffacher, C.V.4
-
15
-
-
0029848960
-
Different sensitivities to acid denaturation within a family of proteins. Implications for acid unfolding membrane translocation
-
Evans, L.J.A., Goble, M.L., Hales, K.A., and Lakey, J.H. (1996) Different sensitivities to acid denaturation within a family of proteins. Implications for acid unfolding membrane translocation. Biochemistry 35: 13180-13185.
-
(1996)
Biochemistry
, vol.35
, pp. 13180-13185
-
-
Evans, L.J.A.1
Goble, M.L.2
Hales, K.A.3
Lakey, J.H.4
-
16
-
-
0033922714
-
Penetration of protein toxins into cells
-
Falnes, P.O., and Sandvig, K. (2000) Penetration of protein toxins into cells. Curr Opin Cell Biol 12: 407-413.
-
(2000)
Curr Opin Cell Biol
, vol.12
, pp. 407-413
-
-
Falnes, P.O.1
Sandvig, K.2
-
17
-
-
0032545324
-
Siderophore-mediated iron transport: Crystal structure of FhuA with bound lipopolysaccharide
-
Ferguson, A.D., Hofmann, E., Coulton, J.W., Diederichs, K., and Welte, W. (1998) Siderophore-mediated iron transport: crystal structure of FhuA with bound lipopolysaccharide. Science 282: 2215-2220.
-
(1998)
Science
, vol.282
, pp. 2215-2220
-
-
Ferguson, A.D.1
Hofmann, E.2
Coulton, J.W.3
Diederichs, K.4
Welte, W.5
-
18
-
-
0036500658
-
Structural basis of gating by the outer membrane transporter FecA
-
Ferguson, A.D., Chakraborty, R., Smith, B.S., Esser, L., van Der Helm, D., and Deisenhofer, J. (2002) Structural basis of gating by the outer membrane transporter FecA. Science 295: 1715-1719.
-
(2002)
Science
, vol.295
, pp. 1715-1719
-
-
Ferguson, A.D.1
Chakraborty, R.2
Smith, B.S.3
Esser, L.4
Van Der Helm, D.5
Deisenhofer, J.6
-
19
-
-
0037022188
-
Surface aspartate residues are essential for the stability of colicin A P-domain: A mechanism for the formation of an acidic molten-globule
-
Fridd, S.L., and Lakey, J.H. (2002) Surface aspartate residues are essential for the stability of colicin A P-domain: a mechanism for the formation of an acidic molten-globule. Biochemistry 41: 1579-1586.
-
(2002)
Biochemistry
, vol.41
, pp. 1579-1586
-
-
Fridd, S.L.1
Lakey, J.H.2
-
20
-
-
0025932041
-
A 'molten-globule' membrane-insertion intermediate of the pore-forming domain of colicin A
-
van der Goot, F.G., Gonzalez-Manas, J.M., Lakey, J.H., and Pattus, F. (1991) A 'molten-globule' membrane-insertion intermediate of the pore-forming domain of colicin A. Nature 354: 408-410.
-
(1991)
Nature
, vol.354
, pp. 408-410
-
-
Van Der Goot, F.G.1
Gonzalez-Manas, J.M.2
Lakey, J.H.3
Pattus, F.4
-
21
-
-
0024368556
-
Point mutations in a conserved region (TonB Box) of the Escherichia coli outer membrane BtuB protein affect vitamin B12 transport
-
Gudmundsdottir, A., Bell, P.E., Lundrigan, M.D., Bradbeer, C., and Kadner, R.J. (1989) Point mutations in a conserved region (TonB Box) of the Escherichia coli outer membrane BtuB protein affect vitamin B12 transport. J Bacteriol 171: 6526-6533.
-
(1989)
J Bacteriol
, vol.171
, pp. 6526-6533
-
-
Gudmundsdottir, A.1
Bell, P.E.2
Lundrigan, M.D.3
Bradbeer, C.4
Kadner, R.J.5
-
22
-
-
0023886391
-
Suppression of the btuB451 mutation by mutations in the tonB gene suggests a direct interaction between TonB and TonB-dependent receptor proteins in the outer membrane of Escherichia coli
-
Heller, K.J., Kadner, R.J., and Günter, K. (1988) Suppression of the btuB451 mutation by mutations in the tonB gene suggests a direct interaction between TonB and TonB-dependent receptor proteins in the outer membrane of Escherichia coli. Gene 64: 147-153.
-
(1988)
Gene
, vol.64
, pp. 147-153
-
-
Heller, K.J.1
Kadner, R.J.2
Günter, K.3
-
23
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L., and Sander, C. (1993) Protein structure comparison by alignment of distance matrices. J Mol Biol 233: 123-138.
-
(1993)
J Mol Biol
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
24
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T.A., Zou, J.Y., Cowan, S.W., and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47: 110-119.
-
(1991)
Acta Crystallogr A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
25
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein surface
-
Kraulis, P. (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein surface. J Appl Crystallogr 24: 946-950.
-
(1991)
J Appl Crystallogr
, vol.24
, pp. 946-950
-
-
Kraulis, P.1
-
26
-
-
0036589166
-
The Tol proteins of Escherichia coli and their involvement in the translocation of group A colicins
-
Lazzaroni, J.C., Dubuisson, J.F., and Vianney, A. (2002) The Tol proteins of Escherichia coli and their involvement in the translocation of group A colicins. Biochimie 84: 391-397.
-
(2002)
Biochimie
, vol.84
, pp. 391-397
-
-
Lazzaroni, J.C.1
Dubuisson, J.F.2
Vianney, A.3
-
27
-
-
0028051476
-
Site-directed spin-labeling study of ligand-induced conformational change in the ferric enterobactin receptor, FepA
-
Liu, J., Rutz, J.M., Klebba, P.E., and Feix, J.B. (1994) Site-directed spin-labeling study of ligand-induced conformational change in the ferric enterobactin receptor, FepA. Biochemistry 33: 13274-13283.
-
(1994)
Biochemistry
, vol.33
, pp. 13274-13283
-
-
Liu, J.1
Rutz, J.M.2
Klebba, P.E.3
Feix, J.B.4
-
28
-
-
0032414254
-
Transmembrane signaling across the ligand-gated FhuA receptor: Crystal structures of free and ferrichrome-bound states reveal allosteric changes
-
Locher, K.P., Rees, B., Koebnik, R., Mitschler, A., Moulinier, L., Rosenbusch, J.P., and Moras, D. (1998) Transmembrane signaling across the ligand-gated FhuA receptor: crystal structures of free and ferrichrome-bound states reveal allosteric changes. Cell 95: 771-778.
-
(1998)
Cell
, vol.95
, pp. 771-778
-
-
Locher, K.P.1
Rees, B.2
Koebnik, R.3
Mitschler, A.4
Moulinier, L.5
Rosenbusch, J.P.6
Moras, D.7
-
29
-
-
0025049224
-
Import-defective colicin B derivatives mutated in the TonB box
-
Mende, J., and Braun, V. (1990) Import-defective colicin B derivatives mutated in the TonB box. Mol Microbiol 4: 1523-1533.
-
(1990)
Mol Microbiol
, vol.4
, pp. 1523-1533
-
-
Mende, J.1
Braun, V.2
-
30
-
-
0035045544
-
Characterization of in vitro interactions between a truncated TonB protein from Escherichia coli and the outer membrane receptors Fhua and FepA
-
Moeck, G.S., and Letellier, L. (2001) Characterization of in vitro interactions between a truncated TonB protein from Escherichia coli and the outer membrane receptors FhuA and FepA. J Bacteriol 183: 2755-2764.
-
(2001)
J Bacteriol
, vol.183
, pp. 2755-2764
-
-
Moeck, G.S.1
Letellier, L.2
-
31
-
-
0024593726
-
Evolutionary relationship between the TonB-dependent outer membrane transport proteins: Nucleotide and amino-acid sequences of the Escherichia coli colicin I receptor gene
-
Nau, C.D., and Konisky, J. (1989) Evolutionary relationship between the TonB-dependent outer membrane transport proteins: nucleotide and amino-acid sequences of the Escherichia coli colicin I receptor gene. J Bacteriol 171: 1041-1047.
-
(1989)
J Bacteriol
, vol.171
, pp. 1041-1047
-
-
Nau, C.D.1
Konisky, J.2
-
33
-
-
0024961641
-
Structure of the membrane-pore-forming fragment of colicin A
-
Parker, M.W., Pattus, F., Tucker, A.D., and Tsernoglou, D. (1989) Structure of the membrane-pore-forming fragment of colicin A. Nature 337: 93-96.
-
(1989)
Nature
, vol.337
, pp. 93-96
-
-
Parker, M.W.1
Pattus, F.2
Tucker, A.D.3
Tsernoglou, D.4
-
34
-
-
0033710356
-
A 76-residue polypeptide of colicin E9 confers receptor specificity and inhibits the growth of vitamin B12-dependent Escherichia coli 113/3 cells
-
Penfold, C.N., Garinot-Schneider, C., Hemmings, A.M., Moore, G.R., Kleanthous, C., and James, R. (2000) A 76-residue polypeptide of colicin E9 confers receptor specificity and inhibits the growth of vitamin B12-dependent Escherichia coli 113/3 cells. Mol Microbiol 38: 639-649.
-
(2000)
Mol Microbiol
, vol.38
, pp. 639-649
-
-
Penfold, C.N.1
Garinot-Schneider, C.2
Hemmings, A.M.3
Moore, G.R.4
Kleanthous, C.5
James, R.6
-
35
-
-
0042065285
-
Touch and go: Tying TonB to transport
-
Postle, K., and Kadner, R.J. (2003) Touch and go: Tying TonB to transport. Mol Microbiol 49: 869-882.
-
(2003)
Mol Microbiol
, vol.49
, pp. 869-882
-
-
Postle, K.1
Kadner, R.J.2
-
36
-
-
0029124248
-
Molten globule and protein folding
-
Ptitsyn, O.B. (1995) Molten globule and protein folding. Adv Protein Chem 47: 83-229.
-
(1995)
Adv Protein Chem
, vol.47
, pp. 83-229
-
-
Ptitsyn, O.B.1
-
37
-
-
0023441218
-
Nucleotide sequencing of the structural gene for colicin N reveals homology between the catalytic, C-terminal domains of colicins A and N
-
Pugsley, A.P. (1987) Nucleotide sequencing of the structural gene for colicin N reveals homology between the catalytic, C-terminal domains of colicins A and N. Mol Microbiol 1: 317-325.
-
(1987)
Mol Microbiol
, vol.1
, pp. 317-325
-
-
Pugsley, A.P.1
-
38
-
-
0017063131
-
Iron uptake in colicin B-resistant mutants of Escherichia coli K-12
-
Pugsley, A.P., and Reeves, P. (1976) Iron uptake in colicin B-resistant mutants of Escherichia coli K-12. J Bacteriol 126: 1052-1062.
-
(1976)
J Bacteriol
, vol.126
, pp. 1052-1062
-
-
Pugsley, A.P.1
Reeves, P.2
-
39
-
-
0017360748
-
The role of colicin receptors in the uptake of ferrienterochelin by Escherichia coli K-12
-
Pugsley, A.P., and Reeves, P. (1977) The role of colicin receptors in the uptake of ferrienterochelin by Escherichia coli K-12. Biochem Biophys Res Commun 74: 903-911.
-
(1977)
Biochem Biophys Res Commun
, vol.74
, pp. 903-911
-
-
Pugsley, A.P.1
Reeves, P.2
-
40
-
-
0031799096
-
Discovery of critical Tol A-binding residues in the bactericidal toxin colicin N: A biophysical approach
-
Raggett, E.M., Bainbridge, G., Evans, L.J., Cooper, A., and Lakey, J.H. (1998) Discovery of critical Tol A-binding residues in the bactericidal toxin colicin N: a biophysical approach. Mol Microbiol 28: 1335-1343.
-
(1998)
Mol Microbiol
, vol.28
, pp. 1335-1343
-
-
Raggett, E.M.1
Bainbridge, G.2
Evans, L.J.3
Cooper, A.4
Lakey, J.H.5
-
41
-
-
0027373676
-
Structural changes accompanying chloroform-induced contraction of the filamentous phage fd
-
Roberts, L.M., and Dunker, A.K. (1993) Structural changes accompanying chloroform-induced contraction of the filamentous phage fd. Biochemistry 32: 10479-10488.
-
(1993)
Biochemistry
, vol.32
, pp. 10479-10488
-
-
Roberts, L.M.1
Dunker, A.K.2
-
42
-
-
0028609034
-
On the nature of the unfolded intermediate in the in vitro transition of the colicin E1 channel domain from the aqueous to the membrane phase
-
Schendel, S.L., and Cramer, W.A. (1994) On the nature of the unfolded intermediate in the in vitro transition of the colicin E1 channel domain from the aqueous to the membrane phase. Protein Sci 3: 2272-2279.
-
(1994)
Protein Sci
, vol.3
, pp. 2272-2279
-
-
Schendel, S.L.1
Cramer, W.A.2
-
43
-
-
0035930345
-
Crystal structure of colicin E3: Implications for cell entry and ribosome inactivation
-
Soelaiman, S., Jakes, K., Wu, N., Li, C., and Shoham, M. (2001) Crystal structure of colicin E3: implications for cell entry and ribosome inactivation. Mol Cell 8: 1053-1062.
-
(2001)
Mol Cell
, vol.8
, pp. 1053-1062
-
-
Soelaiman, S.1
Jakes, K.2
Wu, N.3
Li, C.4
Shoham, M.5
-
44
-
-
0032143552
-
Ion-channel-forming colicins
-
Stroud, R.M., Reiling, K., Wiener, M., and Freymann, D. (1998) Ion-channel-forming colicins. Curr Opin Struct Biol 8: 525-533.
-
(1998)
Curr Opin Struct Biol
, vol.8
, pp. 525-533
-
-
Stroud, R.M.1
Reiling, K.2
Wiener, M.3
Freymann, D.4
-
45
-
-
0033896691
-
Maximum likelihood density modification
-
Terwilliger, T.C. (2000) Maximum likelihood density modification. Acta Crystallogr D56: 965-972.
-
(2000)
Acta Crystallogr
, vol.D56
, pp. 965-972
-
-
Terwilliger, T.C.1
-
46
-
-
0033119895
-
Automated structure solution for MIR and MAD
-
Terwilliger, T.C., and Berendzen, J. (1999) Automated structure solution for MIR and MAD. Acta Crystallogr D55: 849-861.
-
(1999)
Acta Crystallogr
, vol.D55
, pp. 849-861
-
-
Terwilliger, T.C.1
Berendzen, J.2
-
47
-
-
0036778139
-
FepA with globular domain deletions lacks activity
-
Vakharia, H.L., and Postle, K. (2002) FepA with globular domain deletions lacks activity. J Bacteriol 184: 5508-5512.
-
(2002)
J Bacteriol
, vol.184
, pp. 5508-5512
-
-
Vakharia, H.L.1
Postle, K.2
-
48
-
-
0032528046
-
Crystal structure of a colicin N fragment suggests a model for toxicity
-
Vetter, I.R., Parker, M.W., Tucker, A.D., Lakey, J.H., Pattus, F., and Tsernoglou, D. (1998) Crystal structure of a colicin N fragment suggests a model for toxicity. Structure 6: 863-874.
-
(1998)
Structure
, vol.6
, pp. 863-874
-
-
Vetter, I.R.1
Parker, M.W.2
Tucker, A.D.3
Lakey, J.H.4
Pattus, F.5
Tsernoglou, D.6
-
49
-
-
0031022750
-
Crystal structure of colicin Ia
-
Wiener, M., Freymann, D., Ghosh, P., and Stroud, R.M. (1997) Crystal structure of colicin Ia. Nature 385: 461-464.
-
(1997)
Nature
, vol.385
, pp. 461-464
-
-
Wiener, M.1
Freymann, D.2
Ghosh, P.3
Stroud, R.M.4
-
50
-
-
0042508859
-
Structural evidence for iron-free citrate and ferric citrate binding to the TonB-dependent outer membrane transporter FecA
-
Yue, W.W., Grizot, S., and Buchanan, S.K. (2003) Structural evidence for iron-free citrate and ferric citrate binding to the TonB-dependent outer membrane transporter FecA. J Mol Biol 332: 353-368.
-
(2003)
J Mol Biol
, vol.332
, pp. 353-368
-
-
Yue, W.W.1
Grizot, S.2
Buchanan, S.K.3
-
51
-
-
0036589208
-
Importation of nuclease colicins into E. coli cells: Endoproteolytic cleavage and its prevention by the immunity protein
-
de Zamaroczy, M., and Buckingham, R. (2002) Importation of nuclease colicins into E. coli cells: endoproteolytic cleavage and its prevention by the immunity protein. Biochimie 84: 423-432.
-
(2002)
Biochimie
, vol.84
, pp. 423-432
-
-
De Zamaroczy, M.1
Buckingham, R.2
|