Ton-dependent colicins and microcins: Modular design and evolution

Biochimie

Volumn 84, Issue 5-6, 2002, Pages 365-380

  Braun, Volkmar ^a   Patzer, Silke I ^a   Hantke, Klaus ^a  

^a UNIVERSITY OF TÜBINGEN   (Germany)

Author keywords

Colicins B, D, G, H, I, Js, M, V, 5, 10; Microcins E492, 24, J25, H47, M; Pesticin

Indexed keywords

BACTERIAL PROTEIN; BACTERIOCIN; CARRIER PROTEIN; CATECHOLATE SIDEROPHORE RECEPTOR; COLICIN; COLICIN 10; COLICIN 1A; COLICIN 1B; COLICIN 5; COLICIN A; COLICIN B; COLICIN D; COLICIN K; COLICIN M; COLICIN S4; EXBB PROTEIN; LEPB PEPTIDASE; LYSOZYME; MICROCIN; MICROCIN 24; MICROCIN E492; MICROCIN J25; MICROCIN M; PEPTIDASE; PESTICIN; PROTEIN EXBD; PROTEIN TONB; RIBONUCLEASE; TRANSFER RNA; UNCLASSIFIED DRUG; UNINDEXED DRUG; MEMBRANE PROTEIN; O ANTIGEN; PEPTIDOGLYCAN; TONB PROTEIN, BACTERIA;

BACTERIAL GENE; BACTERIUM MUTANT; CATALYSIS; CYTOPLASM; ENERGY EXPENDITURE; EVOLUTION; IMMUNITY; NONHUMAN; PROTEIN TRANSPORT; RECEPTOR BINDING; REVIEW; TERMINAL SEQUENCE; AMINO ACID SEQUENCE; BACTERIUM; BIOSYNTHESIS; CELL MEMBRANE POTENTIAL; CHEMISTRY; DNA SEQUENCE; GENETICS; METABOLISM; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY;

AMINO ACID SEQUENCE; BACTERIA; BACTERIAL PROTEINS; BACTERIOCINS; COLICINS; EVOLUTION; MEMBRANE POTENTIALS; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; O ANTIGENS; PEPTIDOGLYCAN; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 0036589164     PISSN: 03009084     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0300-9084(02)01427-X     Document Type: Review

References (79)

1. E. Schramm, J. Mende, V. Braun, R.M. Kamp, Nucleotide sequence of the colicin B activity gene cba: consensus pentapeptide among TonB-dependent colicins and receptors, J. Bacteriol. 169 (1987) 3350-3357.
2. D. Smajs, G.M. Weinstock, Genetic organization of plasmid ColJs, encoding colicin Js activity, immunity, and release genes, J. Bacteriol. 183 (2001) 3949-3957.
3. V. Braun, Energy-coupled transport and signal transduction through the Gram-negative outer membrane via TonB-ExbB-ExbD-dependent receptor proteins, FEMS Microbiol. Rev. 4 (1995) 295-307.
4. E. Cascales, M. Gavioli, J.N. Sturgis, R. Lloubes, Proton motive force drives the interaction of the inner membrane TolA and the outer membrane Pal proteines in Escherichia coli, Mol. Microbiol. 38 (2000) 904-915.
5. H. Pilsl, V. Braun, The Ton system can functionally replace the TolB protein in the uptake of a mutated colicin U, FEMS Microbiol. Lett. 164 (1998) 363-367.
6. J.A. Mankovich, C.H. Hsu, J. Konisky, DNA and amino acid sequence analysis of structural and immunity genes of colicins Ia and Ib, J. Bacteriol. 168 (1986) 228-236.
7. M. Wiener, D. Freymann, P. Ghosh, R.M. Stroud, Crystal structure of colicin Ia, Nature 385 (1997) 461-464.
8. K. Hantke, Dihydroxybenzoylserine - a siderophore for E. coli, FEMS Microbiol. Lett. 67 (1990) 5-8.
9. O.V. Krazilnikov, J.B. Cruz, L.N. Yuldasheva, W.A.S. Varanda, R.A. Nogueira, A novel approach to study the geometry of the water lumen of ion channels: colicin Ia in plana lipid bilayers, J. Membr. Biol. 161 (1998) 83-92.
10. K.S Jakes, P.K. Kienker, S.L. Slatin, A. Finkelstein, Translocation of inserted foreign epitopes by a channel-forming protein, Biophysics 95 (1998) 4321-4326.
11. X.Q. Qiu, K.S. Jakes, P.K. Kienker, A. Finkelstein, S.L. Slatin, Major transmembrane movement associated with colicin Ia channel gating. J. Gen. Physiol. 107 (1996) 313-328.
12. J.H. Lakey, S.L. Slatin, Pore-forming colicins and their relatives, Curr. Top. Microbiol. Immunol. 257 (2001) 131-161.
13. U. Pressler, V. Braun, B. Wittmann-Liebold, R. Benz, Structural and functional properties of colicin B, J. Biol. Chem. 261 (1986) 2654-2659.
14. J. Mende, V. Braun, Import-defective colicin B derivatives mutated in the TonB box, Mol. Microbiol. 4 (1990) 1523-1533.
15. H. Pilsl, V. Braun, Evidence that the immunity protein inactivates colicin 5 immediately prior to the formation of the transmembrane channel, J. Bacteriol. 177 (1995) 6966-6972.
16. H. Pilsl, V. Braun, Novel colicin 10: assignment of four domains to TonB and TolC-dependent uptake via the Tsx receptor and to channel formation. Mol. Microbiol. 16 (1995) 57-67.
17. H. Pilsl, V. Braun, Strong function-related homology between the channel-forming colicins K and 5, J. Bacteriol. 177 (1995) 6973-6977.
18. D.E. Bradley, S.P. Howard, A new colicin that adsorbs to outer-membrane protein Tsx but is dependent on the tonB instead of the tolQ membrane transport system, J. Gen. Microbiol. 138 (1992) 2721-2724.
19. R.E. Harkness, T. Ölschläger, The biology of colicin M, FEMS Microbiol. Rev. 88 (1991) 27-42.
20. V. Braun, S. Gaisser, C. Glaser, R. Harkness, T. Ölschläger, J. Mende, Import and export of colicin M, in: R. James, C. Lazdunski, F. Pattus (Eds.), Bacteriocins, Microcins and Lantibiotics, NATO ASI Series, 65, 1992, pp. 225-242.
21. P. Gross, V. Braun, Colicin M is inactivated during import by its immunity protein, Mol. Gene. Genet. 251 (1996) 388-396.
22. V. Braun, K. Schaller, M.R. Wabl, Isolation, characterization and action of colicin M, Antimicrob. Ag. and Chemother. 5 (1974) 520-533.
23. K. Schaller, J.V. Höltje, V. Braun, Colicin M is an inhibitor of murein biosynthesis, J. Bacteriol. 152 (1982) 994-1000.
24. R.E. Harkness, V. Braun, Colicin M inhibits peptidoglycan biosynthesis by interfering with lipid carrier recycling, J. Biol. Chem. 264 a) (1989) 6177-6182.
25. R.E. Harkness, V. Braun, Inhibition of lipopolysaccharide O-antigen synthesis by colicin M, J. Biol. Chem. 264 b) (1989) 14716-14722.
26. A.D. Ferguson, E. Hofmann, J.W. Coulton, K. Diederichs, W. Welte, Siderophore-mediated iron transport: crystal structure of FhuA with bound lipopolysaccharide, Science 282 (1998) 2215-2220.
27. K.P. Locher, B. Rees, R. Koebnik, A. Mitschler, L. Moulinier, J.P. Rosenbusch, D. Moras, Transmembrane signalling across the ligand-gated FhuA receptor: crystal structures of free and ferrichrome-bound states reveal allosteric changes, Cell 95 (1998) 771-778.
28. M. Braun, H. Killmann, V. Braun, The β-barrel domain of FhuAΔ5-160 is sufficient for all TonB-dependent FhuA activities of Escherichia coli, Mol. Microbiol. 33 (1999) 1037-1049.
29. H. Pilsl, C. Glaser, P. Gross, H. Killmann, T. Ölschläger, V. Braun, Domains of colicin M involved in uptake and activity, Mol. Gen. Genet. 240 (1993) 103-112.
30. K. Schaller, R. Dreher, V. Braun, Structural and functional properties of colicin M, J. Bacteriol. 146 (1981) 54-63.
31. K. Schaller, A. Krauel, V. Braun, Temperature-sensitive, colicin M-tolerant mutant of Escherichia coli, J. Bacteriol. 147 (1981) 135-139.
32. H. Pilsl, H. Killmann, K. Hantke, V. Braun, Periplasmic location of the pesticin immunity protein suggests inactivation of pesticin in the periplasm, J. Bacteriol. 178 (1996) 2431-2435.
33. W. Vollmer, H. Pilsl, K. Hantke, J.V. Höltje, V. Braun, Pesticin displays muramidase activity, J. Bacteriol. 179 (1997) 1580-1583.
34. K. Timmis, A.K. Hedges, The killing of sensitive cells by colicin D, Biochim. Biophys. Acta 262 (1972) 200-207.
35. U. Roos, R.E. Harkness, V. Braun, Assembly of colicin genes from a few DNA fragments. Nucleoside sequence of colicin D, Mol. Microbiol. 3 (1989) 891-902.
36. C. Hofinger, H. Karch, H. Schmidt, Structure and function of plasmid pColD157 of enterohemorrhagic Escherichia coli O157 and its distribution among strains from patients with diarrhea and haemolytic-uremic syndrome, J. Clin. Microbiol. 36 (1998) 24-29.
37. K. Tomita, T. Ogawa, T. Uozumi, K. Watanabe, H. Masaki, A cytotoxic ribonuclease which specifically cleaves four isoaccepting arginine tRNAs at their anticodon loops, Proc. Natl. Acad. Sci. USA 97 (2000) 8278-8283.
38. M. de Zamaroczy, L. Mora, A. Lecuyer, V. Géli, R.H. Buckingham, Cleavage of colicin D is necessary for cell killing and requires the inner membrane peptidase LepB, Mol. Cell. 8 (2001) 159-168.
39. K.S. Jakes, The importance of being cleaved: an essential step in killing by enzymatic colicins, Mol. Cell. 8 (2001) 159-168.
40. C.C. Liao, K.C. Hsiao, Y.W. Liu, P.H. Leng, H.S. Yuen, K.F. Chak, Processing of DNase domain during translocation of colicin E7 across the membrane of Escherichia coli, Biochem. Biophys. Res. Commun. 284 (2001) 556-562.
41. D. Smajs, G.M. Weinstock, Genetic organization of plasmid ColJs, encoding colicin Js activity, immunity, and release genes, J. Bacteriol. 183 (2001) 3949-3957.
42. A. Nardi, Y. Corda, D. Baty, D. Duche, Colicin A immunity protein interacts with the hydrophobic helical hairpin of the colicin A channel domain in the Escherichia coli inner membrane, J. Bacteriol. 183 (2001) 6721-6725.
43. H. Pilsl, D. Smajs, V. Braun, The tip of the hydrophobic hairpin of colicin U is dispensable for colicin U activity but is important for interaction with the immunity protein, J. Bacteriol. 180 (1998) 4111-4115.
44. H. Pisl, D. Smais, V. Braun, Characterization of Colicin S4 and its receptor, OmpW, a minor protein of the Escherichia coli outer membrane, J. Bacteriol. 181 (1999) 3578-3581.
45. D. Smajs, H. Pilsl, V. Braun, Colicin U, a novel colicin produced by Shigella boydii, J. Bacteriol. 179 (1997) 4919-4928.
46. A. Gratia, P. Fredericq, Diversité de souches antibiotiques de B. coli et etendue variable de leur champs d'action, C. R. Soc. Biol. 140 (1946) 1032.
47. F. Baquero, D. Bouanchaud, M.C. Martinez-Perez, C. Fernandez, Microcin plasmids: a group of extrachromosomal elements coding for low-molecular-weight antibiotics in Escherichia coli, J. Bacteriol. 135 (1978) 342-347.
48. A. Gratia, Sur un remarquable exemple d'antagonisme entre deux souches de colibacille, C. R. Soc. Biol. 93 (1925) 1041-1042.
49. L. Gilson, H.K. Mahanty, R. Kolter, Genetic analysis of an MDR-like export system: the secretion of colicin V, EMBO J. 9 (1990) 3875-3894.
50. T.T. Tseng, K.S. Gratwick, J. Kollman, D. Park, D.H. Nies, A. Goffeau, M.H.J. Saier, The RND permease superfamily: an ancient, ubiquitous and diverse family that includes human diseases and development proteins, J. Mol. Microbiol. Biotechnol. 1 (1999) 107-125.
51. V. Koronakis, A. Sharff, E. Koronakis, B. Luisi, C. Hughes, Crystal structure of the bacterial membrane protein TolC central to multi-drug efflux and protein export, Nature 405 (2000) 914-919.
52. L.S. Havarstein, D.B. Diep, I.F. Nes, A family of bacteriocin ABC transporters carry out proteolytic processing of their substrates concomitant with export, Mol. Microbiol. 16 (1995) 229-240.
53. L.S. Havarstein, H. Holo, I.F. Nes, The leader peptide of colicin V shares consensus sequences with leader peptides that are common among peptide bacteriocins produced by Gram-positive bacteria, Microbiology 140 (1994) 2383-2389.
54. X. Zhong, R. Kolter, P.C. Tai, Processing of colocin V-1, a secretable marker protein of a bacterial ATP binding cassette export system, requires membrane integrity, energy, and cytosolic factors, J. Biol. Chem. 271 (1996) 28057-28063.
55. C.C. Yang, J. Konisky, Colicin V-treated Escherichia coli does not generate membrane potential, J. Bacteriol. 158 (1984) 757-759.
56. H. Chehade, V. Braun, Iron-regulated synthesis and uptake of colicin V, FEMS Microbiol. Lett. 52 (1988) 177-182.
57. A.E. Boyer, P.C. Tai, Characterization of the cvaA and cvi promoters of the colicin V export system: iron-dependent transcription of cvaA is modulated by downstream sequences. J. Bacteriol. 180 (1998) 1662-1672.
58. R. Lagos, M. Baeza, G. Corsini, C. Hetz, E. Strahsburger, J.A. Castillo, C. Vergara, O. Monasterio, Structure, organization and characterization of the gene cluster involved in the production of microcin E492, a channel-forming bacteriocin, Mol. Microbiol. 42 (2001) 229-243.
59. A.M. Pons, N. Zorn, D. Vignon, F. Delalande, A. Van Dorsselaer, G. Cottenceau, Microcin E492 is an unmodified peptide related in structure to colicin V, Antimicrob. Agents Chemother. 46 (2002) 229-230.
60. R. Lagos, M. Wilkens, C. Vergara, X. Cecchi, O. Monasterio, Microcin E492 forms ion channels in phospholipid bilayer membrane, FEBS Lett. 321 (1993) 145-148.
61. M.F. Azpiroz, E. Rodriguez, M. Lavina, The structure, function, and origin of the microcin H47 ATP-binding cassette exporter indicate its relatedness to that of colicin V, Antimicrob Chemother. 45 (2001) 969-972.
62. M. Trujilo, E. Rodriguez, M. Lavina, ATP synthase is necessary for microcin H47 antibiotic action, Antimicrob. Agents Chemother. 45 (2001) 3128-3131.
63. E. Rodriguez, M. Lavina, Genetic analysis of microcin H47 immunity, Can. J. Microbiol. 44 (1998) 692-697.
64. D.E. Bradley, Colicins G and H and their host strains, Can. J. Microbiol. 37 (1991) 751-757.
65. A.P. Pugsley, P. Reeves, Characterization of group B colicin-resistant mutants of Escherichia coli K-12: colicin resistance and the role of enterochelin, J. Bacteriol. 127 (1976) 218-228.
66. K. Hantke, Identification of an iron uptake system specific for coprogen and rhodotorulic acid in Escherichia coli K-12, Mol. Gen. Genet. 191 (1983) 301-306.
67. M.J. Fath, H.K. Mahanty, R. Kolter, Characterization of a purF operon mutation which affects colicin V production, J. Bacteriol. 171 (1989) 3158-3161.
68. A.J. Bäumler, R.M. Tsolis, A.W. van der Velden, I. Stojiljkovic, S. Anic, F. Heffron, Identification of a new iron regulated locus of Salmonella typhi, Gene 183 (1996) 207-213.
69. U. Dobrindt, G. Blum-Oehler, T. Hartsch, G. Gottschalk, E.Z. Ron, R. Funfstuck, J. Hacker, S-Fimbria-encoding determinant sfa(I) is located on pathogenicity island III(536) of uropathogenic Escherichia coli strain 536, Infect. Immun. 69 (2001) 4248-4256.
70. W. Rabsch, W. Voigt, R. Reissbrodt, R.M. Tsolis, A.J. Bäumler, Salmonella typhimurium IroN and FepA proteins mediate uptake of enterobactin but differ in their specificity for other siderophores, J. Bacteriol. 181 (1999) 3610-3612.
71. G.J. O'Brien, H.K. Mahanty, Complete nucleotide sequence of microcin 24 genetic region and analysis of a new ABC transporter, Genebank Acc.Nr. gb U47048 (1996).
72. R.E. Wooley, P.S. Gibbs, E.B. Shotts, Inhibition of Salmonella typhimurium in the chicken intestinal tract by a transformed avirulent avina Escherichia coli, Avian Dis. 43 (1999) 245-250.
73. S.A. Carlson, T.S. Frana, R.W. Griffith, Antibiotic resistance in Salmonella enterica serovar Typhimurium exposed to microcin-producing Escherichia coli, Appl. Environ. Microbiol. 67 (2001) 3763-3766.
74. H. Killmann, M. Braun, C. Herrmann, V. Braun, FhuA barrel-cork hybrids are active transporters and receptors, J. Bacteriol. 183 (2001) 3476-3487.
75. J.O. Solbiati, M. Ciaccio, R.N. Farias, J.E. Gonzalez-Pastor, F. Moreno, R.A. Salomon, Sequence analysis of the four plasmid genes required to produce the circular peptide antibiotic microcin J25, J. Bacteriol. 181 (1999) 2659-2662.
76. A. Blond, M. Cheminant, I. Segalas-Milazzo, J. Peduzzi, M. Barthelemy, C. Goulard, R. Salomon, F. Moreno, R. Farias, S. Rebuffat, Solution structure of microcin J25, the single macrocyclic antimicrobial peptide from Escherichia coli, Eur. J. Biochem. 268 (2001) 2124-2133.
77. M.A. Delgado, J.O, Solbiati, M.J. Chiuchiolo, R.N. Farias, R.A. Salomon, Escherichia coli outer membrane protein TolC is involved in production of the peptide antibiotic microcin J25, J. Bacteriol. 181 (1999) 1968-1970.
78. M.A. Delgado, M.R. Rintoul, R.N. Farias, R.A. Salomon, Escherichia coli RNA polymerase is the target of the cyclopeptide antibiotic microcin J25, J. Bacteriol. 183 (2001) 4543-4550.
79. M.R. Rintoul, B.F. de Arcuri, R.A. Salomon, R.N. Farias, R.D. Morero, The antibacterial action of microcin J25: evidence for disruption of cytoplasmic membrane energization in Salmonella newport, FEMS Microbiol. Lett. 204 (2001) 265-270.