-
1
-
-
0003604405
-
-
Gesteland R F, Cech T R, Atkins J F (Eds.); Cold Spring Harbor Laboratory Press
-
Gesteland R F, Cech T R, Atkins J F (Eds.). The RNA World. Cold Spring Harbor Laboratory Press, 1999.
-
(1999)
The RNA World
-
-
-
2
-
-
0037133945
-
Computational genomics of noncoding RNA genes
-
Eddy S. Computational genomics of noncoding RNA genes. Cell, 2002, 109: 137-140.
-
(2002)
Cell
, vol.109
, pp. 137-140
-
-
Eddy, S.1
-
3
-
-
0004194908
-
-
Simons R W, Grumberg-Magnago M (Eds.); Cold Spring Harbor Laboratory Press, New York
-
Simons R W, Grumberg-Magnago M (Eds.). RNA Structure and Function. Cold Spring Harbor Laboratory Press, New York, 1998.
-
(1998)
RNA Structure and Function
-
-
-
4
-
-
0032437667
-
Control of translation initiation in animals
-
Gray N K, Wickens M. Control of translation initiation in animals. Ann. Rev. Cell Dev. Biol., 1998, 14: 399-458.
-
(1998)
Ann. Rev. Cell Dev. Biol.
, vol.14
, pp. 399-458
-
-
Gray, N.K.1
Wickens, M.2
-
5
-
-
0016792988
-
5s RNA secondary structure
-
Fox G E, Woese C R. 5s RNA secondary structure. Nature, 1975, 256: 505-507.
-
(1975)
Nature
, vol.256
, pp. 505-507
-
-
Fox, G.E.1
Woese, C.R.2
-
7
-
-
0033980890
-
Comparative sequence analysis and patterns of covariation in RNA secondary structures
-
Stephan W, Parsch J, Braverman J M. Comparative sequence analysis and patterns of covariation in RNA secondary structures. Genetics, 2000, 154(2): 909-921.
-
(2000)
Genetics
, vol.154
, Issue.2
, pp. 909-921
-
-
Stephan, W.1
Parsch, J.2
Braverman, J.M.3
-
8
-
-
0035984477
-
Automatic RNA secondary structure prediction with a comparative approach
-
Tahi F, Gouy M, Regnier M. Automatic RNA secondary structure prediction with a comparative approach. Computers and Chemistry, 2002, 26: 521-530.
-
(2002)
Computers and Chemistry
, vol.26
, pp. 521-530
-
-
Tahi, F.1
Gouy, M.2
Regnier, M.3
-
9
-
-
0033386613
-
A new method to predict the consensus secondary structure of a set of unaligned RNA sequences
-
Bouhinon D, Soldano H. A new method to predict the consensus secondary structure of a set of unaligned RNA sequences. Bioinformatics, 1999, 15(10): 785-798.
-
(1999)
Bioinformatics
, vol.15
, Issue.10
, pp. 785-798
-
-
Bouthinon, D.1
Soldano, H.2
-
10
-
-
0002287019
-
Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
-
NATO ASI Series, Kluwer Academic Publishers
-
Zucker M, Matthews D H, Turner D H. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide. In RNA Biochemistry and Biotechnology, NATO ASI Series, Kluwer Academic Publishers, 1999, pp.11-43.
-
(1999)
RNA Biochemistry and Biotechnology
, pp. 11-43
-
-
Zucker, M.1
Matthews, D.H.2
Turner, D.H.3
-
13
-
-
0035945235
-
Conserved RNA secondary structures in picornaviridae genomes
-
Witwer C, Rauscher S, Hofacker I L, Stadler P F. Conserved RNA secondary structures in picornaviridae genomes. Nucleic Acids Res., 2001, 29: 5079-5089.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 5079-5089
-
-
Witwer, C.1
Rauscher, S.2
Hofacker, I.L.3
Stadler, P.F.4
-
14
-
-
0036568187
-
A data mining approach to discover unusual folding regions in genome sequences
-
Le S-Y, Liu W-M, Maizel Jr J V. A data mining approach to discover unusual folding regions in genome sequences. Knowledge Based Systems, 2002, 15: 243-250.
-
(2002)
Knowledge Based Systems
, vol.15
, pp. 243-250
-
-
Le, S.-Y.1
Liu, W.-M.2
Maizel Jr., J.V.3
-
15
-
-
0344375092
-
Discovering well ordered folding patterns in nucleotide sequences
-
Le S-Y, Chen J-H, Konings D, Maizel Jr J V. Discovering well ordered folding patterns in nucleotide sequences. Bioinformatics, 2003, 19(3): 354-361.
-
(2003)
Bioinformatics
, vol.19
, Issue.3
, pp. 354-361
-
-
Le, S.-Y.1
Chen, J.-H.2
Konings, D.3
Maizel Jr., J.V.4
-
16
-
-
0033765362
-
Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs
-
Rivas E, Eddy S. Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. Bioinformatics, 2000, 16(7): 583-605.
-
(2000)
Bioinformatics
, vol.16
, Issue.7
, pp. 583-605
-
-
Rivas, E.1
Eddy, S.2
-
17
-
-
0030812919
-
Finding common sequence and structure motifs in a set of RNA sequences
-
Gorodkin J, Heyer L J, Stormo G D. Finding common sequence and structure motifs in a set of RNA sequences. Nucleic Acids Res., 1997, 25(18): 3724-3732.
-
(1997)
Nucleic Acids Res.
, vol.25
, Issue.18
, pp. 3724-3732
-
-
Gorodkin, J.1
Heyer, L.J.2
Stormo, G.D.3
-
18
-
-
0035873307
-
Discovering common stem-loop motifs in unaligned RNA sequences
-
Gorodkin J, Stricklin S L, Stormo G D. Discovering common stem-loop motifs in unaligned RNA sequences. Nucleic Acids Res., 2001, 29(10): 2135-2144.
-
(2001)
Nucleic Acids Res.
, vol.29
, Issue.10
, pp. 2135-2144
-
-
Gorodkin, J.1
Stricklin, S.L.2
Stormo, G.D.3
-
19
-
-
0028258377
-
An RNA pattern matching program with enhanced performance and portability
-
Laferriere A, Gautheret D, Cedergren R. An RNA pattern matching program with enhanced performance and portability. Comp. Appl. Biosci., 1994, 10: 211-212.
-
(1994)
Comp. Appl. Biosci.
, vol.10
, pp. 211-212
-
-
Laferriere, A.1
Gautheret, D.2
Cedergren, R.3
-
20
-
-
0035890840
-
RNAmotif, an RNA secondary structure definition and search algorithm
-
Macke T J, Ecker D J, Gutell R R et al. RNAmotif, an RNA secondary structure definition and search algorithm. Nucleic Acids Res., 2001, 29(22): 4724-4735.
-
(2001)
Nucleic Acids Res.
, vol.29
, Issue.22
, pp. 4724-4735
-
-
Macke, T.J.1
Ecker, D.J.2
Gutell, R.R.3
-
21
-
-
0033915990
-
Patsearch: A pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance
-
Pesole G, Liuni S, D'Souza M. Patsearch: A pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance. Bioinformatics, 2000, 16(5): 439-450.
-
(2000)
Bioinformatics
, vol.16
, Issue.5
, pp. 439-450
-
-
Pesole, G.1
Liuni, S.2
D'Souza, M.3
-
22
-
-
0036920495
-
Discovery of RNA structural elements using evolutionary computation
-
Fogel G, Porto W, Weekes D et al. Discovery of RNA structural elements using evolutionary computation. Nucleic Acids Res., 2002, 30(23): 5310-5317.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.23
, pp. 5310-5317
-
-
Fogel, G.1
Porto, W.2
Weekes, D.3
-
23
-
-
0036712136
-
Prediction of consensus structural motifs in a family of coregulated RNA sequences
-
Hu Y-J. Prediction of consensus structural motifs in a family of coregulated RNA sequences. Nucleic Acids Res., 2002, 30(17): 3886-3893.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.17
, pp. 3886-3893
-
-
Hu, Y.-J.1
-
24
-
-
0028942159
-
Finding the hairpin in the haystack: Searching for RNA motifs
-
Dandekar T, Hentze M W. Finding the hairpin in the haystack: Searching for RNA motifs. TIGS, 1995, 11: 45-50.
-
(1995)
TIGS
, vol.11
, pp. 45-50
-
-
Dandekar, T.1
Hentze, M.W.2
-
27
-
-
0025372992
-
Identification of consensus patterns in unaligned DNA sequences known to be functionally related
-
Hertz G, Hartzell G, Stormo G. Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comput. Appl. Biosci., 1990, 6: 81-92.
-
(1990)
Comput. Appl. Biosci.
, vol.6
, pp. 81-92
-
-
Hertz, G.1
Hartzell, G.2
Stormo, G.3
-
28
-
-
0032826179
-
Identifying DNA and protein patterns with statistically significant alignment of multiple sequences
-
Hertz G, Stormo G. Identifying DNA and protein patterns with statistically significant alignment of multiple sequences. Bioinformatics, 1999, 15: 563-577.
-
(1999)
Bioinformatics
, vol.15
, pp. 563-577
-
-
Hertz, G.1
Stormo, G.2
-
29
-
-
0344360195
-
Aligning RNA sequences and their secondary structures
-
Technical report, University of Milano Bicocca
-
Pavesi G. Aligning RNA sequences and their secondary structures. Technical report, University of Milano Bicocca, 2003.
-
(2003)
-
-
Pavesi, G.1
-
30
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman S B, Wunsch C D. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 1970, 48: 443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
32
-
-
0028000994
-
Coaxial stacking of helices enhances binding of oligoribonucleotides
-
Walter A, Turner D H, Kim J et al. Coaxial stacking of helices enhances binding of oligoribonucleotides. PNAS, 1994, 91: 9218-9222.
-
(1994)
PNAS
, vol.91
, pp. 9218-9222
-
-
Walter, A.1
Turner, D.H.2
Kim, J.3
-
33
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure
-
Mathews D H, Sabina J, Zucker M et al. Expanded sequence dependence of thermodynamic parameters provides robust prediction of RNA secondary structure. J. Mol. Biol., 1999, 288: 911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zucker, M.3
-
34
-
-
0029758487
-
Molecular control of vertebrate iron metabolism: mRNA based regulatory circuits operated by iron, nitric oxide and oxidative stress
-
Hentze M W, Kuhn L C. Molecular control of vertebrate iron metabolism: mRNA based regulatory circuits operated by iron, nitric oxide and oxidative stress. In Proc. Natl. Acad. Sci., USA, 1996, 93: 8175-8182.
-
Proc. Natl. Acad. Sci., USA, 1996
, vol.93
, pp. 8175-8182
-
-
Hentze, M.W.1
Kuhn, L.C.2
-
35
-
-
0036087522
-
Utrdb and utrsite: Specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNA. Update 2002
-
Pesole G, Liuni S, Grillo G et al. Utrdb and utrsite: Specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNA. update 2002. Nucleic Acids Res., 2002, 30(1): 335-340.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.1
, pp. 335-340
-
-
Pesole, G.1
Liuni, S.2
Grillo, G.3
-
36
-
-
0037252717
-
Srpdb: Signal recognition particle database
-
Rosenblad M A, Gorodkin J, Knudsen B et al. Srpdb: Signal recognition particle database. Nucleic Acids Res., 2003, 31(1): 363-364.
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.1
, pp. 363-364
-
-
Rosenblad, M.A.1
Gorodkin, J.2
Knudsen, B.3
-
37
-
-
0028964746
-
Signal recognition particle (SRP), a ubiquitous initiator of protein translocation
-
Lutcke H. Signal recognition particle (SRP), a ubiquitous initiator of protein translocation. Eur. J. Biochem., 1995, 228(3): 531-550.
-
(1995)
Eur. J. Biochem.
, vol.228
, Issue.3
, pp. 531-550
-
-
Lutcke, H.1
-
38
-
-
0032984289
-
Structure of the most conserved internal loop in SRP RNA
-
Schmitz U, James T, Lukavsky P et al. Structure of the most conserved internal loop in SRP RNA. Nature Structural Biology, 1999, 6(7): 634-638.
-
(1999)
Nature Structural Biology
, vol.6
, Issue.7
, pp. 634-638
-
-
Schmitz, U.1
James, T.2
Lukavsky, P.3
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