-
1
-
-
0034682882
-
Geometric analysis and comparison of protein-DNA interfaces: Why is there no simple code for recognition?
-
Pabo, C.O. and Nekludova, L. (2000) Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition? J. Mol. Biol., 301, 597-624.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 597-624
-
-
Pabo, C.O.1
Nekludova, L.2
-
2
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi, S.P., Rochon, Y., Franza, B.R. and Aebersold, R. (1999) Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol., 19, 1720-1730.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
3
-
-
0028438188
-
Regulation of protein synthesis by mRNA structure
-
Gray, N.K. and Hentze, M.W. (1994) Regulation of protein synthesis by mRNA structure. Mol. Biol. Rep., 19, 195-200.
-
(1994)
Mol. Biol. Rep.
, vol.19
, pp. 195-200
-
-
Gray, N.K.1
Hentze, M.W.2
-
4
-
-
0030266993
-
RNA structure and the regulation of gene expression
-
Klaff, P., Riesner, D. and Steger, G. (1996) RNA structure and the regulation of gene expression. Plant Mol. Biol., 32, 89-106.
-
(1996)
Plant Mol. Biol.
, vol.32
, pp. 89-106
-
-
Klaff, P.1
Riesner, D.2
Steger, G.3
-
5
-
-
0000133199
-
Identifying protein-binding sites from unaliged DNA fragments
-
Stormo, G.D. and Hartzell, G.W., III (1989) Identifying protein-binding sites from unaliged DNA fragments. Proc. Natl Acad. Sci. USA, 86, 1183-1187.
-
(1989)
Proc. Natl Acad. Sci. USA
, vol.86
, pp. 1183-1187
-
-
Stormo, G.D.1
Hartzell G.W. III2
-
6
-
-
0031878759
-
Approaches to the automatic discovery of patterns in biosequences
-
Brazma, A., Jonassen, I., Eidhammer, I. and Gilbert, D. (1998) Approaches to the automatic discovery of patterns in biosequences. J. Comput. Biol., 5, 279-305.
-
(1998)
J. Comput. Biol.
, vol.5
, pp. 279-305
-
-
Brazma, A.1
Jonassen, I.2
Eidhammer, I.3
Gilbert, D.4
-
7
-
-
0031787969
-
Finding DNA-regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
Roth, F.P., Hughes, J.D., Estep, P.W. and Church, G.M. (1998) Finding DNA-regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat. Biotechnol., 16, 939-945.
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 939-945
-
-
Roth, F.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
8
-
-
0032483307
-
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
-
van Helden, J., Andre, B. and Collodo-Vides, J. (1998) Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol., 281, 827-842.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 827-842
-
-
Van Helden, J.1
Andre, B.2
Collodo-Vides, J.3
-
9
-
-
0032826179
-
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
-
Hertz, G.Z. and Stormo, G.D. (1999) Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics, 15, 563-577.
-
(1999)
Bioinformatics
, vol.15
, pp. 563-577
-
-
Hertz, G.Z.1
Stormo, G.D.2
-
10
-
-
0016792988
-
5S RNA secondary structure
-
Fox, G.E. and Woese, C.R. (1975) 5S RNA secondary structure. Nature, 256, 505-507.
-
(1975)
Nature
, vol.256
, pp. 505-507
-
-
Fox, G.E.1
Woese, C.R.2
-
11
-
-
0024416246
-
Phylogenetic comparative analysis and the secondary structure of riboclease - A review
-
Pace, N.R., Smith, D., Olsen, G.J. and James, B.D. (1989) Phylogenetic comparative analysis and the secondary structure of riboclease - a review. Gene, 82, 65-75.
-
(1989)
Gene
, vol.82
, pp. 65-75
-
-
Pace, N.R.1
Smith, D.2
Olsen, G.J.3
James, B.D.4
-
12
-
-
0013364977
-
Prediction and experimental investigation of RNA secondary and tertiary foldings
-
Nagai, K. and Mattaj, I.W. (eds), IRL Oxford University Press, Oxford, UK
-
Westhof, E. and Michel, F. (1994) Prediction and experimental investigation of RNA secondary and tertiary foldings. In Nagai, K. and Mattaj, I.W. (eds), RNA-Protein Interactions. IRL Oxford University Press, Oxford, UK, pp. 25-51.
-
(1994)
RNA-Protein Interactions
, pp. 25-51
-
-
Westhof, E.1
Michel, F.2
-
13
-
-
0342962976
-
DNA and RNA structure prediction
-
Bishop, M.J. and Rawlings, C.J. (eds), IRL Oxford University Press, Oxford, UK
-
Westhof, E., Auffinger, P. and Gaspin, C. (1996) DNA and RNA structure prediction. In Bishop, M.J. and Rawlings, C.J. (eds), DNA-Protein Sequence Analysis. IRL Oxford University Press, Oxford, UK, pp. 255-278.
-
(1996)
DNA-Protein Sequence Analysis
, pp. 255-278
-
-
Westhof, E.1
Auffinger, P.2
Gaspin, C.3
-
14
-
-
0026466830
-
Identifying constraints on the higher-order structure of RNA: Continued development and application of comparative sequence analysis methods
-
Gutell, R.R., Power, A., Hertz, G.Z., Putz, E. and Stormo, G.D. (1992) Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. Nucleic Acids Res., 20, 5785-5795.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5785-5795
-
-
Gutell, R.R.1
Power, A.2
Hertz, G.Z.3
Putz, E.4
Stormo, G.D.5
-
15
-
-
0029173861
-
Symbolic generation and clustering of RNA 3-D motifs
-
Rawlings, C., Clark, D., Altman, R., Hunter, L., Lengauer, T. and Wodak, S. (eds), IRL Oxford University Press, Oxford, UK
-
Foucrault, M. and Major, F. (1995) Symbolic generation and clustering of RNA 3-D motifs. In Rawlings, C., Clark, D., Altman, R., Hunter, L., Lengauer, T. and Wodak, S. (eds), Proceedings of the Third International Conference on Intelligent Systems in Molecular Biology. IRL Oxford University Press, Oxford, UK, pp. 121-126.
-
(1995)
Proceedings of the Third International Conference on Intelligent Systems in Molecular Biology
, pp. 121-126
-
-
Foucrault, M.1
Major, F.2
-
16
-
-
0028916219
-
Identification of base-triples in RNA using comparative sequence analysis
-
Gautheret, D., Damberger, S.H. and Gutell, R.R. (1995) Identification of base-triples in RNA using comparative sequence analysis. J. Mol. Biol., 248, 27-43.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 27-43
-
-
Gautheret, D.1
Damberger, S.H.2
Gutell, R.R.3
-
17
-
-
0031730497
-
An automated RNA modeling approach capable of identifying pseudoknots and base-triples
-
Tabaska, J., Cary, R.B., Gabow, H.N. and Stormo, G.D. (1998) An automated RNA modeling approach capable of identifying pseudoknots and base-triples. Bioinformatics, 14, 691-699.
-
(1998)
Bioinformatics
, vol.14
, pp. 691-699
-
-
Tabaska, J.1
Cary, R.B.2
Gabow, H.N.3
Stormo, G.D.4
-
18
-
-
0033832578
-
Phylogenetically enhanced statistical tools for RNA structure prediction
-
Akmaev, V.R., Kelley, S.T. and Stormo, G.D. (2000) Phylogenetically enhanced statistical tools for RNA structure prediction. Bioinformatics, 16, 501-512.
-
(2000)
Bioinformatics
, vol.16
, pp. 501-512
-
-
Akmaev, V.R.1
Kelley, S.T.2
Stormo, G.D.3
-
19
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
20
-
-
0034651542
-
Prediction of common secondary structures of RNAs: A genetic algorithm approach
-
Chen, J.H., Le, S.-Y. and Maizel, J.V. (2000) Prediction of common secondary structures of RNAs: a genetic algorithm approach. Nucleic Acids Res., 28, 991-999.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 991-999
-
-
Chen, J.H.1
Le, S.-Y.2
Maizel, J.V.3
-
21
-
-
0033980890
-
Comparative sequence analysis and patterns of covariation in RNA secondary structures
-
Parsch, J., Braverman, J.M. and Stephan, W. (2000) Comparative sequence analysis and patterns of covariation in RNA secondary structures. Genetics, 154, 909-921.
-
(2000)
Genetics
, vol.154
, pp. 909-921
-
-
Parsch, J.1
Braverman, J.M.2
Stephan, W.3
-
22
-
-
0028272315
-
RNA sequence analysis using covariance models
-
Eddy, S. and Durbin, R. (1994) RNA sequence analysis using covariance models. Nucleic Acids Res., 22, 2079-2088.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2079-2088
-
-
Eddy, S.1
Durbin, R.2
-
23
-
-
0028593508
-
Stochastic context-free grammars for tRNA modeling
-
Sakakibara, Y., Brown, M., Hughey, R., Mian, I.S., Sjolander, K., Underwood, R.C. and Haussler, D. (1994) Stochastic context-free grammars for tRNA modeling. Nucleic Acids Res., 22, 5112-5120.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 5112-5120
-
-
Sakakibara, Y.1
Brown, M.2
Hughey, R.3
Mian, I.S.4
Sjolander, K.5
Underwood, R.C.6
Haussler, D.7
-
24
-
-
0030925920
-
Pfam: A comprehensive database of protein domain families based on seed alignments
-
Sonnhammer, E.L.L., Eddy, S.R. and Durbin, R. (1997) Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins, 28, 405-420.
-
(1997)
Proteins
, vol.28
, pp. 405-420
-
-
Sonnhammer, E.L.L.1
Eddy, S.R.2
Durbin, R.3
-
25
-
-
0031743421
-
Profile hidden markov models
-
Eddy, S.R. (1998) Profile hidden markov models. Bioinformatics, 14, 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
26
-
-
0033582628
-
A computational screen for methylation guide snoRNAs in yeast
-
Lowe, T. and Eddy, S. (1999) A computational screen for methylation guide snoRNAs in yeast. Science, 283, 1168-1171.
-
(1999)
Science
, vol.283
, pp. 1168-1171
-
-
Lowe, T.1
Eddy, S.2
-
27
-
-
0034566410
-
Small subunit ribosomal RNA modeling using stochastic context-free grammars
-
Altman, R., Bailey, T.L., Bourne, P., Gribskov, M., Lengauer, T., Shindyalov, I.N., Ten Eyck, L.F. and Weissig, H. (eds), AAAI/MIT Press, Menlo Park, CA
-
Brown, M. (2000) Small subunit ribosomal RNA modeling using stochastic context-free grammars. In Altman, R., Bailey, T.L., Bourne, P., Gribskov, M., Lengauer, T., Shindyalov, I.N., Ten Eyck, L.F. and Weissig, H. (eds), Proceedings of the Eighth International Conference on Intelligent Svstems in Molecular Biology. AAAI/MIT Press, Menlo Park, CA, pp. 57-66.
-
(2000)
Proceedings of the Eighth International Conference on Intelligent Svstems in Molecular Biology
, pp. 57-66
-
-
Brown, M.1
-
28
-
-
0030629295
-
Finding common sequence and structure motifs in a set of RNA sequences
-
Gaasterland, T., Karp, P., Karplus, K., Ouzounis, C., Sander, C. and Valencia, A. (eds), AAAI/MIT Press, Menlo Park, CA
-
Gorodkin, J., Heyer, L.J. and Stormo, G.D. (1997) Finding common sequence and structure motifs in a set of RNA sequences. In Gaasterland, T., Karp, P., Karplus, K., Ouzounis, C., Sander, C. and Valencia, A. (eds), Proceedings of the Fifth International Conference on Intelligent Systems in Molecular Biology. AAAI/MIT Press, Menlo Park, CA, pp. 120-123.
-
(1997)
Proceedings of the Fifth International Conference on Intelligent Systems in Molecular Biology
, pp. 120-123
-
-
Gorodkin, J.1
Heyer, L.J.2
Stormo, G.D.3
-
29
-
-
0030812919
-
Finding the most significant common sequence and structure motifs in a set of RNA sequences
-
Gorodkin, J., Heyer, L.J. and Stormo, G.D. (1997) Finding the most significant common sequence and structure motifs in a set of RNA sequences. Nucleic Acids Res., 25, 3724-3732.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3724-3732
-
-
Gorodkin, J.1
Heyer, L.J.2
Stormo, G.D.3
-
30
-
-
0002287019
-
Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
-
Barciszewski, J. and Clark, B.F.C. (eds), Kluwer Academic Publishers, Boston, MA
-
Zuker, M., Mathews, D.H. and Turner, D.H. (1999) Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In Barciszewski, J. and Clark, B.F.C. (eds), RNA Biochemistry and Biotechnology, NATO ASI Series. Kluwer Academic Publishers, Boston, MA, pp. 11-43.
-
(1999)
RNA Biochemistry and Biotechnology, NATO ASI Series
, pp. 11-43
-
-
Zuker, M.1
Mathews, D.H.2
Turner, D.H.3
-
31
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews, D., Sabina, J., Zuker, M. and Turner, D. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.1
Sabina, J.2
Zuker, M.3
Turner, D.4
-
32
-
-
0033970706
-
The european small subunit ribosomal RNA database
-
Van de Peer, Y., De Rijk, P., Wuyts, J., Winkelmans, T. and De Wachter, R. (2000) The european small subunit ribosomal RNA database. Nucleic Acids Res., 28, 175-176.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 175-176
-
-
Van De Peer, Y.1
De Rijk, P.2
Wuyts, J.3
Winkelmans, T.4
De Wachter, R.5
-
33
-
-
0033954255
-
The RDP (Ribosomal Database Project) continues
-
Maidak, B.L., Cole, J.R., Lilburn, T.G., Parker, C.T., Jr, Saxman, P.R., Stredwick, J.M., Garrity, G.M., Li, B., Olsen, G.J., Pramanik, S., Schmidt, T.M. and Tiedje, J.M. (2000) The RDP (Ribosomal Database Project) continues. Nucleic Acids Res., 28, 173-174.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 173-174
-
-
Maidak, B.L.1
Cole, J.R.2
Lilburn, T.G.3
Parker C.T., Jr.4
Saxman, P.R.5
Stredwick, J.M.6
Garrity, G.M.7
Li, B.8
Olsen, G.J.9
Pramanik, S.10
Schmidt, T.M.11
Tiedje, J.M.12
-
34
-
-
0011869631
-
-
Gutell, R.R., Subashchandran, S., Schnare, M., Du, Y., Lin, N., Madabusi, L., Muller, K., Pande, N., Yu, N., Shang, Z., Date, S., Konings, D., Schweiker, V., Weiser, B. and Cannone, J.J. (2001) Comparative sequence analysis and the prediction of RNA structure, and the web. http:// www.RNA.icmb.utexas.edu/
-
(2001)
Comparative Sequence Analysis and the Prediction of RNA Structure
-
-
Gutell, R.R.1
Subashchandran, S.2
Schnare, M.3
Du, Y.4
Lin, N.5
Madabusi, L.6
Muller, K.7
Pande, N.8
Yu, N.9
Shang, Z.10
Date, S.11
Konings, D.12
Schweiker, V.13
Weiser, B.14
Cannone, J.J.15
-
35
-
-
0028205447
-
Enlarged representative set of protein structures
-
Hobohm, U. and Sander, C. (1994) Enlarged representative set of protein structures. Protein Sci., 3, 522-524.
-
(1994)
Protein Sci.
, vol.3
, pp. 522-524
-
-
Hobohm, U.1
Sander, C.2
-
36
-
-
0033957836
-
UTRdb and UTRsite: Specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNAs
-
Pesole, G., Liuni, S., Grillo, G., Larizza, A., Malakowski, W. and Saccone, C. (2000) UTRdb and UTRsite: specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNAs. Nucleic Acids Res., 28, 193-196.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 193-196
-
-
Pesole, G.1
Liuni, S.2
Grillo, G.3
Larizza, A.4
Malakowski, W.5
Saccone, C.6
-
37
-
-
0025372992
-
Identification of consensus patterns in unaligned DNA sequences known to be functionally related
-
Hertz, G.Z., Hartzell, G.W., III and Stormo, G.D. (1990) Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comput. Appl. Biosci., 6, 81-92.
-
(1990)
Comput. Appl. Biosci.
, vol.6
, pp. 81-92
-
-
Hertz, G.Z.1
Hartzell G.W. III2
Stormo, G.D.3
-
38
-
-
0022360113
-
Significance of nucleotide sequence alignments: A method for random sequence permutation that preserves dinucleotide and codon usage
-
Altschul, S.F. and Erickson, B.W. (1985) Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage. Mol. Biol. Evol., 2, 526-538.
-
(1985)
Mol. Biol. Evol.
, vol.2
, pp. 526-538
-
-
Altschul, S.F.1
Erickson, B.W.2
-
39
-
-
0029758487
-
Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress
-
Hentze, M.W. and Kuhn, L.C. (1996) Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress. Proc. Natl Acad. Sci. USA, 93, 8175-8182.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 8175-8182
-
-
Hentze, M.W.1
Kuhn, L.C.2
-
40
-
-
0022146059
-
Simultaneous solution of the RNA folding, alignment and protosequence problems
-
Sankoff, D. (1985) Simultaneous solution of the RNA folding, alignment and protosequence problems. SIAM J. Appl. Math., 45, 810-825.
-
(1985)
SIAM J. Appl. Math.
, vol.45
, pp. 810-825
-
-
Sankoff, D.1
-
41
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T.F. and Waterman, M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
42
-
-
0019082587
-
Fast algorithm for predicting the secondary structure of single-stranded RNA
-
Nussinov, R. and Jacobson, A.B. (1980) Fast algorithm for predicting the secondary structure of single-stranded RNA. Proc. Natl Acad. Sci. USA, 77, 6309-6313.
-
(1980)
Proc. Natl Acad. Sci. USA
, vol.77
, pp. 6309-6313
-
-
Nussinov, R.1
Jacobson, A.B.2
-
43
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews, B.W. (1975) Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochem. Biophys. Acta, 405, 442-451.
-
(1975)
Biochem. Biophys. Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
44
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost, B. and Sander, C. (1993) Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol., 232, 584-599.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
45
-
-
0025744474
-
Prediction of human mRNA donor and acceptor sites from the DNA sequence
-
Brunak, S., Engelbrecht, J. and Knudsen, S. (1991) Prediction of human mRNA donor and acceptor sites from the DNA sequence. J. Mol. Biol., 220, 49-65.
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 49-65
-
-
Brunak, S.1
Engelbrecht, J.2
Knudsen, S.3
-
46
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamic and auxiliary information
-
Zuker, M. and Stiegler, P. (1981) Optimal computer folding of large RNA sequences using thermodynamic and auxiliary information. Nucleic Acids Res., 9, 133-148.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
-
47
-
-
0031473030
-
Displaying the information contents of structural RNA alignments: The structure logos
-
Gorodkin, J., Heyer, L.J., Brunak, S. and Stormo, G.D. (1997) Displaying the information contents of structural RNA alignments: the structure logos. Comput. Appl. Biosci., 13, 583-586.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 583-586
-
-
Gorodkin, J.1
Heyer, L.J.2
Brunak, S.3
Stormo, G.D.4
-
48
-
-
0032847645
-
Matrixplot: Visualizing sequence constraints
-
Gorodkin, J., Stærfeldt, H.H., Lund, O. and Brunak, S. (1999) Matrixplot: visualizing sequence constraints. Bioinformatics, 15, 769-770.
-
(1999)
Bioinformatics
, vol.15
, pp. 769-770
-
-
Gorodkin, J.1
Stærfeldt, H.H.2
Lund, O.3
Brunak, S.4
-
49
-
-
0342621759
-
A generalized erdös-rényi law for sequence analysis problems
-
Heyer, L.J. (2000) A generalized erdös-rényi law for sequence analysis problems. Method. Comput. Appl. Prob., 2, 309-329.
-
(2000)
Method. Comput. Appl. Prob.
, vol.2
, pp. 309-329
-
-
Heyer, L.J.1
-
50
-
-
0034623015
-
Computational and statistical properties of the thorne-kishino-felsenstein model of statistical alignment: Computational properties, homology testing and goodness-of-fit
-
Hein, J., Wiuf, C., Knudsen, B., Moller, M. and Wibling, G. (2000) Computational and statistical properties of the thorne-kishino-felsenstein model of statistical alignment: computational properties, homology testing and goodness-of-fit. J. Mol. Biol., 302, 265-279.
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 265-279
-
-
Hein, J.1
Wiuf, C.2
Knudsen, B.3
Moller, M.4
Wibling, G.5
-
51
-
-
0028942159
-
Finding the hairpin in the haystack: Searching for RNA motifs
-
Dandekar, T. and Hentze, M.W. (1995) Finding the hairpin in the haystack: searching for RNA motifs. Trends Genet., 11, 45-50.
-
(1995)
Trends Genet.
, vol.11
, pp. 45-50
-
-
Dandekar, T.1
Hentze, M.W.2
-
53
-
-
0035228391
-
An algorithm for statistical alignment of sequences related by a binary tree
-
Hein, J. (2001 ) An algorithm for statistical alignment of sequences related by a binary tree. Pac. Symp. Biocomput., 179-190.
-
(2001)
Pac. Symp. Biocomput.
, pp. 179-190
-
-
Hein, J.1
-
54
-
-
0343056180
-
A method to combine a set of alignments in one better alignment
-
Knudsen, B. and Hein, J.J. (1999) A method to combine a set of alignments in one better alignment. Bioinformatics, 15, 122-130.
-
(1999)
Bioinformatics
, vol.15
, pp. 122-130
-
-
Knudsen, B.1
Hein, J.J.2
-
55
-
-
0031894830
-
High apparent rate of simultaneous compensatory base-pair substututions in ribosomal RNA
-
Tillier, E.R.M. and Collins, R.A. (1998) High apparent rate of simultaneous compensatory base-pair substututions in ribosomal RNA. Genetics, 148, 993-2000.
-
(1998)
Genetics
, vol.148
, pp. 993-2000
-
-
Tillier, E.R.M.1
Collins, R.A.2
-
56
-
-
0033278902
-
Toward assigning helical regions in alignments of ribosomal RNA and testing the appropriateness of evolutionary models
-
Schoniger, M. and von Haeseler, A. (1999) Toward assigning helical regions in alignments of ribosomal RNA and testing the appropriateness of evolutionary models. J. Mol. Evol., 49, 1-8.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 1-8
-
-
Schoniger, M.1
Von Haeseler, A.2
|