-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. "Basic local alignment search tool." J Mol Biol. 215(3):403-10, 1990.
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
2642714164
-
GAIA: Framework annotation of genomic sequence
-
Bailey LC Jr, Fischer S, Schug J, Crabtree J, Gibson M, Overton GC. "GAIA: framework annotation of genomic sequence." Genome Res. 8(3):234-50, 1998.
-
(1998)
Genome Res
, vol.8
, Issue.3
, pp. 234-250
-
-
Bailey, L.C.1
Fischer, S.2
Schug, J.3
Crabtree, J.4
Gibson, M.5
Overton, G.C.6
-
3
-
-
0036798237
-
Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights
-
Bhattacharyya A, Stilwagen S, Reznik G, Feil H, Feil WS, Anderson I, Bernal A, D'Souza M, Ivanova N, Kapatral V, Larsen N, Los T, Lykidis A, Selkov E Jr, Walunas TL, Purcell A, Edwards RA, Hawkins T, Haselkorn R, Overbeek R, Kyrpides NC, Predki PF. "Draft Sequencing and Comparative Genomics of Xylella fastidiosa Strains Reveal Novel Biological Insights." Genome Res 12(10):1556-63, 2002.
-
(2002)
Genome Res
, vol.12
, Issue.10
, pp. 1556-1563
-
-
Bhattacharyya, A.1
Stilwagen, S.2
Reznik, G.3
Feil, H.4
Feil, W.S.5
Anderson, I.6
Bernal, A.7
D'Souza, M.8
Ivanova, N.9
Kapatral, V.10
Larsen, N.11
Los, T.12
Lykidis, A.13
Selkov, E.14
Walunas, T.L.15
Purcell, A.16
Edwards, R.A.17
Hawkins, T.18
Haselkorn, R.19
Overbeek, R.20
Kyrpides, N.C.21
Predki, P.F.22
more..
-
5
-
-
0036606576
-
Fast algorithms for large-scale genome alignment and comparison
-
Delcher AL, Phillippy A, Carlton J, Salzberg SL. "Fast algorithms for large-scale genome alignment and comparison." Nucleic Acids Res. 30(11):2478-83, 2002.
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.11
, pp. 2478-2483
-
-
Delcher, A.L.1
Phillippy, A.2
Carlton, J.3
Salzberg, S.L.4
-
6
-
-
0037039357
-
The genome sequence of the facultative intracellular pathogen Brucella melitensis
-
DelVecchio VG, Kapatral V, Redkar RJ, Patra G, Mujer C, Los T, Ivanova N, Anderson I, Bhattacharyya A, Lykidis A, Reznik G, Jablonski L, Larsen N, D'Souza M, Bernal A, Mazur M, Goltsman E, Selkov E, Elzer PH, Hagius S, O'Callaghan D, Letesson JJ, Haselkorn R, Kyrpides N, Overbeek R. "The genome sequence of the facultative intracellular pathogen Brucella melitensis." Proc Natl Acad Sci USA 99(1):443-8 2002.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.1
, pp. 443-448
-
-
DelVecchio, V.G.1
Kapatral, V.2
Redkar, R.J.3
Patra, G.4
Mujer, C.5
Los, T.6
Ivanova, N.7
Anderson, I.8
Bhattacharyya, A.9
Lykidis, A.10
Reznik, G.11
Jablonski, L.12
Larsen, N.13
D'Souza, M.14
Bernal, A.15
Mazur, M.16
Goltsman, E.17
Selkov, E.18
Elzer, P.H.19
Hagius, S.20
O'Callaghan, D.21
Letesson, J.J.22
Haselkorn, R.23
Kyrpides, N.24
Overbeek, R.25
more..
-
7
-
-
0036777599
-
Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains
-
Fleischmann RD, Alland D, Eisen JA, Carpenter L, White O, Peterson J, DeBoy R, Dodson R, Gwinn M, Haft D, Hickey E, Kolonay JF, Nelson WC, Umayam LA, Ermolaeva M, Salzberg SL, Delcher A, Utterback T, Weidman J, Khouri H, Gill J, Mikula A, Bishai W, Jacobs Jr WR Jr, Venter JC, Fraser CM. "Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains." J Bacteriol 184(19):5479-90, 2002.
-
(2002)
J Bacteriol
, vol.184
, Issue.19
, pp. 5479-5490
-
-
Fleischmann, R.D.1
Alland, D.2
Eisen, J.A.3
Carpenter, L.4
White, O.5
Peterson, J.6
DeBoy, R.7
Dodson, R.8
Gwinn, M.9
Haft, D.10
Hickey, E.11
Kolonay, J.F.12
Nelson, W.C.13
Umayam, L.A.14
Ermolaeva, M.15
Salzberg, S.L.16
Delcher, A.17
Utterback, T.18
Weidman, J.19
Khouri, H.20
Gill, J.21
Mikula, A.22
Bishai, W.23
Jacobs, W.R.24
Venter, J.C.25
Fraser, C.M.26
more..
-
8
-
-
0029828166
-
Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture
-
Gaasterland T, Sensen CW. "Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture." Biochimie. 78(5):302-10, 1996.
-
(1996)
Biochimie
, vol.78
, Issue.5
, pp. 302-310
-
-
Gaasterland, T.1
Sensen, C.W.2
-
9
-
-
0010314009
-
Algorithms for constructing comparative maps
-
Sankoff, D. and Nadeau, J H., editors, Series in Computational Biology, Dordrecht, NL. Kluwer Academic Press
-
Goldberg D, McCouch, S, Kleinberg, J. "Algorithms for Constructing Comparative Maps". in Sankoff, D. and Nadeau, J H., editors, Comparative Genomics: Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment and the Evolution of Gene Families, Volume1 of Series in Computational Biology, Dordrecht, NL. Kluwer Academic Press 2000.
-
(2000)
Comparative Genomics: Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment and the Evolution of Gene Families
, vol.1
-
-
Goldberg, D.1
McCouch, S.2
Kleinberg, J.3
-
10
-
-
0034469185
-
Annotating sequence data using Genotator
-
Nov
-
Harris NL. "Annotating sequence data using Genotator." Mol Biotechnol. Nov;16(3):221-32, 2000.
-
(2000)
Mol Biotechnol
, vol.16
, Issue.3
, pp. 221-232
-
-
Harris, N.L.1
-
11
-
-
0025372992
-
Identification of consensus patterns in unaligned DNA sequences known to be functionally related
-
Hertz GZ, Hartzell GW 3rd, Stormo GD. "Identification of consensus patterns in unaligned DNA sequences known to be functionally related." Comput Appl Biosci. 6(2):81-92, 1990.
-
(1990)
Comput Appl Biosci
, vol.6
, Issue.2
, pp. 81-92
-
-
Hertz, G.Z.1
Hartzell, G.W.2
Stormo, G.D.3
-
12
-
-
0034518158
-
VISTA: Visualizing global DNA sequence alignments of arbitrary length
-
Mayor C., Brudno M., Schwartz J. R., Poliakov A., Rubin E. M., Frazer K. A., Pachter L. S. and Dubchak I. "VISTA: Visualizing Global DNA Sequence Alignments of Arbitrary Length". Bioinformatics, 16:1046, 2000.
-
(2000)
Bioinformatics
, vol.16
, pp. 1046
-
-
Mayor, C.1
Brudno, M.2
Schwartz, J.R.3
Poliakov, A.4
Rubin, E.M.5
Frazer, K.A.6
Pachter, L.S.7
Dubchak, I.8
-
13
-
-
0035098916
-
GeneOrder: Comparing the order of genes in small genomes
-
Mazumder R, Kolaskar A, Seto D. "GeneOrder: comparing the order of genes in small genomes." Bioinformatics 17(2):162-6, 2001.
-
(2001)
Bioinformatics
, vol.17
, Issue.2
, pp. 162-166
-
-
Mazumder, R.1
Kolaskar, A.2
Seto, D.3
-
14
-
-
0036791011
-
The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts
-
Paulsen IT, Seshadri R, Nelson KE, Eisen JA, Heidelberg JF, Read TD, Dodson RJ, Umayam L, Brinkac LM, Beanan MJ, Daugherty SC, Deboy RT, Durkin AS, Kolonay JF, Madupu R, Nelson WC, Ayodeji B, Kraul M, Shetty J, Malek J, Van Aken SE, Riedmuller S, Tettelin H, Gill SR, White O, Salzberg SL, Hoover DL, Lindler LE, Halling SM, Boyle SM, Fraser CM. "The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts." Proc Natl Acad Sci USA 99(20):13148-53 2002.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.20
, pp. 13148-13153
-
-
Paulsen, I.T.1
Seshadri, R.2
Nelson, K.E.3
Eisen, J.A.4
Heidelberg, J.F.5
Read, T.D.6
Dodson, R.J.7
Umayam, L.8
Brinkac, L.M.9
Beanan, M.J.10
Daugherty, S.C.11
Deboy, R.T.12
Durkin, A.S.13
Kolonay, J.F.14
Madupu, R.15
Nelson, W.C.16
Ayodeji, B.17
Kraul, M.18
Shetty, J.19
Malek, J.20
Van Aken, S.E.21
Riedmuller, S.22
Tettelin, H.23
Gill, S.R.24
White, O.25
Salzberg, S.L.26
Hoover, D.L.27
Lindler, L.E.28
Halling, S.M.29
Boyle, S.M.30
Fraser, C.M.31
more..
-
15
-
-
0035166979
-
The comprehensive microbial resource
-
1
-
Peterson JD, Umayam LA, Dickinson T, Hickey EK, White O. "The Comprehensive Microbial Resource." Nucleic Acids Res. 1;29(1):123-5, 2001.
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.1
, pp. 123-125
-
-
Peterson, J.D.1
Umayam, L.A.2
Dickinson, T.3
Hickey, E.K.4
White, O.5
-
16
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. "Artemis: sequence visualization and annotation." Bioinformatics 16(10):944-5, 2000.
-
(2000)
Bioinformatics
, vol.16
, Issue.10
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
17
-
-
0034020416
-
PipMaker - A web server for aligning two genomic DNA sequences
-
Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer C, Bouck J, Gibbs R, Hardison R, Miller W. "PipMaker - a web server for aligning two genomic DNA sequences." Genome Res. 10(4):577-86, 2000.
-
(2000)
Genome Res
, vol.10
, Issue.4
, pp. 577-586
-
-
Schwartz, S.1
Zhang, Z.2
Frazer, K.A.3
Smit, A.4
Riemer, C.5
Bouck, J.6
Gibbs, R.7
Hardison, R.8
Miller, W.9
-
18
-
-
0036796318
-
Mosaic organization of orthologous sequences in grass genomes
-
Song R, Llaca V, Messing J. "Mosaic organization of orthologous sequences in grass genomes." Genome Res 12(10):1549-55, 2002.
-
(2002)
Genome Res
, vol.12
, Issue.10
, pp. 1549-1555
-
-
Song, R.1
Llaca, V.2
Messing, J.3
-
19
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov RL, Koonin EV, Lipman DJ. "A genomic perspective on protein families." Science 278(5338):631-7, 1997.
-
(1997)
Science
, vol.278
, Issue.5338
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
20
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV. "The COG database: new developments in phylogenetic classification of proteins from complete genomes." Nucleic Acids Res 29(1):22-8, 2001.
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.1
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
21
-
-
0036806338
-
The complete nucleotide sequence and development of a diferential detection assay for a pepper mild mottle virus (PMMoV) isolate that overcomes L3 resistance in pepper
-
Velasco L, Janssen D, Ruiz-Garcia L, Segundo E, Cuadrado I. "The complete nucleotide sequence and development of a diferential detection assay for a pepper mild mottle virus (PMMoV) isolate that overcomes L3 resistance in pepper." J Virol Methods 106(1):135 2002.
-
(2002)
J Virol Methods
, vol.106
, Issue.1
, pp. 135
-
-
Velasco, L.1
Janssen, D.2
Ruiz-Garcia, L.3
Segundo, E.4
Cuadrado, I.5
|