Magic angle spinning solid-state NMR spectroscopy for structural studies of protein interfaces. Resonance assignments of differentially enriched Escherichia coli thioredoxin reassembled by fragment complementation

Journal of the American Chemical Society

Volumn 126, Issue 50, 2004, Pages 16608-16620

  Marulanda, Dabeiba ^a   Tasayco, Maria Luisa ^b   McDermott, Ann ^c   Cataldi, Marcela ^b   Arriaran, Vilma ^b   Polenova, Tatyana ^a  

^a UNIVERSITY OF DELAWARE   (United States)

^b CITY COLLEGE OF NEW YORK   (United States)

^c Och Spine at New York Presbyterian Hospitals   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; POLYETHYLENE GLYCOLS; PRECIPITATION (CHEMICAL); STATISTICAL METHODS;

FRAGMENT COMPLEMENTATION; MAGIC ANGLE SPINNING; PROTEIN ASSEMBLIES; THIOREDOXIN;

PROTEINS;

CARBON 13; MACROGOL; NITROGEN 15; THIOREDOXIN;

ARTICLE; ESCHERICHIA COLI; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRECIPITATION; PREDICTION; PROTEIN ASSEMBLY; STATISTICAL ANALYSIS; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; CARBON ISOTOPES; ESCHERICHIA COLI PROTEINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NITROGEN ISOTOPES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PEPTIDE FRAGMENTS; POLYETHYLENE GLYCOLS; THIOREDOXIN;

EID: 11444258696     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0464589     Document Type: Article

References (66)

1. Tycko, R. Prog. NMR Spectrosc. 2003, 42, 53-68.
2. Petkova, A. T.; Ishii, Y.; Balbach, J. J.; Antzutkin, O. N.; Leapman, R. D.; Delaglio, F.; Tycko, R. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 16742-16747.
3. Park, S. H.; Mrse, A. A.; Nevzorov, A. A.; Mesleh, M. F.; Oblatt-Montal, M.; Montal, M.; Opella, S. J. J. Mol. Biol. 2003, 333, 409-424.
4. Nishimura, K.; Kim, S. G.; Zhang, L.; Cross, T. A. Biochemistry 2002, 41, 13170-13177.
5. Drobny, G. P.; Long, J. R.; Karlsson, T.; Shaw, W.; Popham, J.; Oyler, N.; Bower, P.; Stringer, J.; Gregory, D.; Mehta, M.; Stayton, P. S. Annu. Rev. Phys. Chem. 2003, 54, 531-571.
6. Cegelski, L.; Kim, S. J.; Hing, A. W.; Studelska, D. R.; O'Connor, R. D.; Mehta, A. K.; Schaefer, J. Biochemistry 2002, 41, 13053-13058.
7. Krushelnitsky, A. G.; Hempel, G.; Reichert, D. Biochim. Biophys. Acta: Proteins Proteom. 2003, 1650, 117-127.
8. Lee, H.; de Montellano, P. R. O.; McDermott, A. E. Biochemistry 1999, 38, 10808-10813.
9. Lipton, A. S.; Heck, R. W.; Ellis, P. D. J. Am. Chem. Soc. 2004, 126, 4735-4739.
10. Lipton, A. S.; Buchko, G. W.; Sears, J. A.; Kennedy, M. A.; Ellis, P. D. J. Am. Chem. Soc. 2001, 123, 992-993.
11. Gu, Z. T.; Drueckhammer, D. G.; Kurz, L.; Liu, K.; Martin, D. P.; McDermott, A. Biochemistry 1999, 38, 8022-8031.
12. Emmler, T.; Gieschler, S.; Limbach, H. H.; Buntkowsky, G. J. Mol. Struct. 2004, 700, 29-38.
13. Straus, S. K.; Bremi, T.; Ernst, R. R. J. Biomol. NMR 1998, 12, 39-50.
14. Hong, M. J. Biomol. NMR 1999. 15, 1-14.
15. Igumenova, T. I.; Wand, A. J.; McDermott, A. E. J. Am. Chem. Soc. 2004, 126, 5323-5331.
16. Igumenova, T. I. Assignment of uniformly carbon-13-enriched proteins and optimization of their carbon lineshapes, Ph.D. thesis, Columbia University, New York, 2003.
17. Igumenova, T. I.; McDermott, A. E.; Zilm, K. W.; Martin, R. W.; Paulson, E. K.; Wand, A. J. J. Am. Chem. Soc. 2004, 126, 6720-6727.
18. McDermott, A. E.; Polenova, T.; Bockmann, A.; Zilm, K.; Martin, R.; Paulson, E.; Montellione, G. J. Biomol. NMR 2000, 16, 209-219.
19. Pauli, J.; Baldus, M.; van Rossum, B.; de Groot, H.; Oschkinat, H. ChemBioChem 2001, 2, 272-281.
20. Castellani, F.; van Rossum, B.; Diehl, A.; Schubert, M.; Rehbein, K.; Oschkinat, H. Nature 2002, 420, 98-102.
21. Bockmann, A.; Lange, A.; Galinier, A.; Luca, S.; Giraud, N.; Juy, M.; Heise, H.; Montserret, R.; Penin, F.; Baldus, M. J. Biomol. NMR 2003, 27, 323-339.
22. Arnér, E. S. J.; Holmgren, A. Eur. J. Biochem. 2000, 267, 6102-6109.
23. Jeffery, C. Trends Biochem. Sci. 1999, 24, 8-11.
24. Gromer, S.; Urig, S.; Becker, K. Med. Res. Rev. 2004, 24, 40-89.
25. Hirt, R. P.; Muller, S.; Embley, T. M.; Coombs, G. H. Trends Parasitol. 2002, 18, 302-308.
26. Yu, W.-F.; Tung, C.-C.; Wang, H.; Tasayco, M. L. Protein Sci. 2000, 9, 20-28.
27. Tasayco, M. L.; Chao, K. Proteins 1995, 22, 41-44.
28. Yang, X. M.; Yu, W. F.; Li, J. H.; Fuchs, J.; Rizo, J.; Tasayco, M. L. J. Am. Chem. Soc. 1998, 120, 7985-7986.
29. Eklund, H.; Gleason, F. K.; Holmgren, A. Proteins: Struct., Funct. Genet. 1991, 11, 13-28.
30. Martin, J. L. Structure 1995, 3, 245-250.
31. Yang, X. M.; Georgescu, R. E.; Li, J. H.; Yu, W. F.; Haierhan; Tasayco, M. L. Recognition between disordered polypeptide chains from cleavage of an alpha/beta domain; self-versus non-self-association; Proceedings of the Pacific Symposium in Biocomputing, 1999; pp 590-600.
32. Tasayco, M. L.; Fuchs, J.; Yang, X.-M.; Dyalram, D.; Georgescu, R. E. Biochemistry 2000, 39, 10613-10618.
33. Georgescu, R. E.; García-Mira, M. D. M.; Tasayco, M. L.; Sánchez-Ruiz, J. M. Eur. J. Biochem. 2001, 268, 1477-1485.
34. Dangi, B.; Dobrodumov, A. V.; Louis, J. M.; Gronenborn, A. M. Biochemistry 2002, 41, 9376-9388.
35. Laskowski, R. A.; Hutchinson, E. G.; Michie, A. D.; Wallace, A. C.; Jones, M. L.; Thornton, J. M. Trends Biochem. Sci. 1997, 22, 488-490.
36. Chaffotte, A. F.; Li, J. H.; Georgescu, R. E.; Goldberg, M. E.; Tasayco, M. L. Biochemistry 1997, 36, 16040-16048.
37. Chandrasekhar, K.; Campbell, A. P.; Jeng, M.-F.; Holmgren, A.; Dyson, H. J. J. Biomol. NMR 1994, 4, 411-432.
38. Marley, J.; Lu, M.; Bracken, C. J. Biomol. NMR 2001, 20, 71-75.
39. Sambrook, J.; Fritsch, E. F.; Maniatis, T. Molecular Cloning: A Laboratory Manual; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, 1989; Vol. 3.
40. Langsetmo, K.; Fuchs, J.; Woodward, C. Biochemistry 1989, 28, 3211-3220.
41. Holmgren, A.; Reichard, P. Eur. J. Biochem. 1967, 2, 187-196.
42. Wishart, D. S.; Bigam, C. G.; Yao, J.; Abildgaard, F.; Dyson, H. J.; Oldfield, E.; Markley, J. L.; Sykes, B. D. J. Biomol. NMR 1995, 6, 135-140.
43. McDermott, A.; Gu, Z. T. In Encyclopedia of Nuclear Magnetic Resonance; Grant, D. M., Harris, R. K., Eds.; Wiley: New York, 1996; Vol. 1, pp 1137-1147.
44. Morcombe, C. R.; Zilm, K. W. J. Magn. Reson. 2003, 162, 479-486.
45. Takegoshi, K.; Nakamura, S.; Terao, T. Chem. Phys. Lett. 2001, 344, 631-637.
46. Detken, A.; Hardy, E. H.; Ernst, M.; Meier, B. H. Chem. Phys. Lett. 2002, 356, 298-304.
47. Baldus, M.; Petkova, A. T.; Herzfeld, J.; Griffin, R. G. Mol. Phys. 1998, 95, 1197-1207.
48. Bloembergen, N. Physica 1949, 15, 386-426.
49. Delaglio, F.; Grzesiek, S.; Vuister, G. W.; Zhu, G.; Pfeifer, J.; Bax, A. J. Biomol. NMR 1995, 6, 277-293.
50. Goddard, T. D.; Kneller, D. G. SPARKY 3, version 3.110; University of California, San Francisco: San Francisco, CA, 2004.
51. Cornilescu, G.; Delaglio, F.; Bax, A. J. Biomol. NMR 1999, 13, 289-302.
52. Pauli, J.; van Rossum, B.; Forster, H.; de Groot, H. J. M.; Oschkinat, H. J. Magn. Reson. 2000, 143, 411-416.
53. Williams, J. C.; McDermott, A. E. Biochemistry 1995, 43, 8309-8319.
54. Clore, G. M.; Gronenborn, A. M. Science 1991, 252, 1390-1399.
55. Ernst, M.; Meier, M. A.; Tuherm, T.; Samoson, A.; Meier, B. H. J. Am. Chem. Soc. 2004, 126, 4764-4765.
56. Castellani, F.; van Rossum, B.-J.; Diehl, A.; Rehbein, K.; Oschkinat, H. Biochemistry 2003, 42, 11476-11483.
57. Egorova-Zachernyuk, T. A.; Hollander, J.; Fraser, N.; Gast, P.; Hoff, A. J.; Cogdell, R.; de Groot, H. J. M.; Baldus, M. J. Biomol. NMR 2001, 19, 243-253.
58. Wishart, D. S.; Sykes, B. D. J. Biomol. NMR 1994, 4, 171-180.
59. LeMaster, D. M.; Kushlan, D. M. J. Am. Chem. Soc. 1996, 118, 9255-9264.
60. Hong, M. J. Magn. Reson. 1999, 139, 389-401.
61. Gardner, K. H.; Kay, L. E. Annu. Rev. Biophys. Biomol. Struct. 1998, 27, 357-406.
62. Muir, T. W.; Sondhi, D.; Cole, P. A. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 6705-6710.
63. Waugh, D. S. J. Biomol. NMR 1996, 8, 184-192.
64. Yabuki, T.; Kigawa, T.; Dohmae, N.; Takio, K.; Terada, T.; Ito, Y.; Laue, E. D.; Cooper, J. A.; Kaioosho, M.; Yokoyama, S. J. Biomol. NMR 1998, 11, 295-306.
65. Yamazaki, T.; Otomo, T.; Oda, N.; Kyogoku, Y.; Uegaki, K.; Ito, N.; Ishino, Y.; Nakamura, H. J. Am. Chem. Soc. 1998, 120, 5591-5592.
66. Katti, S. K.; LeMaster, D. M.; Eklund, H. J. Mol. Biol. 1990, 212, 167-84.