Determination of solid-state NMR structures of proteins by means of three-dimensional 15N-13C-13C dipolar correlation spectroscopy and chemical shift analysis

Biochemistry

Volumn 42, Issue 39, 2003, Pages 11476-11483

  Castellani, Federica ^a   Van Rossum, Barth Jan ^a,b   Diehl, Annette ^a   Rehbein, Kristina ^a   Oschkinat, Hartmut ^a,b  

^a LEIBNIZ INSTITUT FÜR MOLEKULARE PHARMAKOLOGIE   (Germany)

^b FREIE UNIVERSITÄT BERLIN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CHEMICAL ANALYSIS; CORRELATION METHODS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEINS;

CHEMICAL SHIFTS;

BIOCHEMISTRY;

CARBON 13; FODRIN; GLYCEROL; PROTEIN; PROTEIN SH3; UNCLASSIFIED DRUG;

ARTICLE; BACTERIUM; DIPOLAR CORRELATION SPECTROSCOPY; DIPOLE; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN STRUCTURE; PROTON NUCLEAR MAGNETIC RESONANCE; SIGNAL PROCESSING; SOLID STATE MAGIC ANGLE SPINNING NUCLEAR MAGNETIC RESONANCE; THREE DIMENSIONAL IMAGING;

CARBON ISOTOPES; ESCHERICHIA COLI PROTEINS; MODELS, MOLECULAR; NITROGEN ISOTOPES; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN STRUCTURE, SECONDARY; SPECTRIN; SRC HOMOLOGY DOMAINS;

BACTERIA (MICROORGANISMS);

EID: 0141483325     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi034903r     Document Type: Article

References (38)

1. Balbach, J. J., Petkova, A. T., Oyler, N. A., Antzutkin, O. N., Gordon, D. J., Meredith, S. C., and Tycko, R. (2002) Biophys. J. 83, 1205-1216.
2. Isaac, B., Gallagher, G. J., Balazs, Y. S., and Thompson, L. K. (2002) Biochemistry 41, 3025-3036.
3. Smith, S. O., Eilers, M., Song, D., Crocker, E., Ying, W., Groesbeek, M., Metz, G., Ziliox, M., and Aimoto, S. (2002) Biophys. J. 82, 2476-2486.
4. Nishimura, K., Kim, S., Zhang, L., and Cross, T. A. (2002) Biochemistry 41, 13170-13177.
5. Jaroniec, C. P., MacPhee, C. E., Astrof, N. S., Dobson, C. M., and Griffin, R. G. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 16748-16753.
6. Verdegem, P. J. E., Helmle, M., Lugtenburg, J., and deGroot, H. J. M. (1997) J. Am. Chem. Soc. 119, 169-174.
7. Petkova, A. T., Hatanaka, M., Jaroniec, C. P., Hu, J. G. G., Belenky, M., Verhoeven, M., Lugtenburg, J., Griffin, R. G., and Herzfeld, J. (2002) Biochemistry 41, 2429-2437.
8. van Beek, J. D., Hess, S., Vollrath, F., and Meier, B. H. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 10266-10271.
9. Blanco, F. J., Hess, S., Pannell, L. K., Rizzo, N. W., and Tycko, R. (2001) J. Mol. Biol. 313, 845-859.
10. Feng, X., Verdegem, P. J. E., Eden, M., Sandstrom, D., Lee, Y. K., Bovee-Geurts, P. H. M., de Grip, W. J., Lugtenburg, J., de Groot, H. J. M., and Levitt, M. H. (2000) J. Biomol. NMR 16, 1-8.
11. Hong, M., McMillan, R. A., and Conticello, V. P. (2002) J. Biomol. NMR 22, 175-179.
12. Yao, X., Yamaguchi, S., and Hong, M. (2002) J. Biomol. NMR 24, 51-62.
13. Hodgkinson, P., and Emsley, L. (1999) J. Magn. Reson. 139, 46-59.
14. Kiihne, S., Mehta, M. A., Stringer, J. A., Gregory, D. M., Shiels, J. C., and Drobny, G. P. (1998) J. Phys. Chem. A 102, 2274-2282.
15. LeMaster, D. M., and Kushlan, D. M. (1996) J. Am. Chem. Soc. 118, 9255-9264.
16. Hong, M. (1999) J. Magn. Reson. 139, 389-401.
17. Hong, M., and Jakes, K. (1999) J. Biomol. NMR 14, 71-74.
18. Szeverenyi, N. M., Sullivan, M. J., and Maciel, G. E. (1982) J. Magn. Reson. 47, 462-475.
19. Castellani, F., van Rossum, B., Diehl, A., Schubert, M., Rehbein, K., and Oschkinat, H. (2002) Nature 420, 98-102.
20. Cornilescu, G., Delaglio, F., and Bax, A. (1999) J. Biomol. NMR 13, 289-302.
21. Shochat, S., Gast, P., Hoff, A. J., Boender, G. J., Vanleeuwen, S., Vanliemt, W. B. S., Vijgenboom, E., Raap, J., Lugtenburg, J., and deGroot, H. J. M. (1995) Spectrochim. Acta, Part A 51, 135-144.
22. Verhoeven, M. A., Creemers, A. F. L., Bovee-Geurts, P. H. M., de Grip, W. J., Lugtenburg, J., and de Groot, H. J. M. (2001) Biochemistry 40, 3282-3288.
23. EgorovaZachemyuk, T. A., vanRossum, B., Boender, G. J., Franken, E., Ashurst, J., Raap, J., Gast, P., Hoff, A. J., Oschkinat, H., and deGroot, H. J. M. (1997) Biochemistry 36, 7513-7519.
24. Griffiths, J. M., Lakshmi, K. V., Bennett, A. E., Raap, J., Vanderwielen, C. M., Lugtenburg, J., Herzfeld, J., and Griffin, R. G. (1994) J. Am. Chem. Soc. 116, 10178-10181.
25. Creemers, A. F. L., Kiihne, S., Bovee-Geurts, P. H. M., deGrip, W. J., Lugtenburg, J., and de Groot, H. J. M. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 9101-9106.
26. Hong, M. (1999) J. Biomol. NMR 15, 1-14.
27. McDermott, A., Polenova, T., Bockmann, A., Zilm, K. W., Paulson, E. K., Martin, R. W., Montelione, G. T., and Paulsen, E. K. (2000) J. Biomol. NMR 16, 209-219.
28. Pauli, J., van Rossum, B., Forster, H., de Groot, H. J. M., and Oschkinat, H. (2000) J. Magn. Reson. 143, 411-416.
29. Egorova-Zachemyuk, T. A., Hollander, J., Fraser, N., Gast, P., Hoff, A. J., Cogdell, R., de Groot, H. J., and Baldus, M. (2001) J. Biomol. NMR 19, 243-253.
30. Pauli, J., Baldus, M., van Rossum, B., de Groot, H., and Oschkinat, H. (2001) ChemBioChem 2, 272-281.
31. Baldus, M., Petkova, A. T., Herzfeld, J., and Griffin, R. G. (1998) Mol. Phys. 95, 1197-1207.
32. Bennett, A. E., Rienstra, C. M., Auger, M., Lakshmi, K. V., and Griffin, R. G. (1995) J. Chem. Phys. 103, 6951-6958.
33. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Ctystallogr. D54, 905-921.
34. Laws, D. D., Bitter, H. M., Liu, K., Ball, H. L., Kaneko, K., Wille, H., Cohen, F. E., Prusiner, S. B., Pines, A., and Wemmer, D. E. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 11686-11690.
35. Luca, S., Filippov, D. V., van Boom, J. H., Oschkinat, H., de Groot, H. J., and Baldus, M. (2001) J. Biomol. NMR 20, 325-331.
36. van Rossum, B. J., Castellani, F., Rehbein, K., Pauli, J., and Oschkinat, H. (2001) ChemBioChem 2, 906-914.
37. van Rossum, B. J., Castellani, F., Pauli, J., Rehbein, K., Hollander, J., de Groot, H. J., and Oschkinat, H. (2003) J. Biomol. NMR 25, 217-223.
38. Musacchio, A., Noble, M., Pauptit, R., Wierenga, R., and Saraste, M. (1992) Nature 359, 851-855.