메뉴 건너뛰기




Volumn 33, Issue 7, 2004, Pages 580-588

Significance of low-frequency local fluctuation motions in the transmembrane B and C α-helices of bacteriorhodopsin, to facilitate efficient proton uptake from the cytoplasmic surface, as revealed by site-directed solid-state 13C NMR

Author keywords

Bacteriorhodopsin; Conformation and dynamics change; Low frequency local fluctuations; Proton uptake; Site directed solid state 13C NMR

Indexed keywords

ASPARTIC ACID; BACTERIORHODOPSIN; CARBON 13; PROLINE; PROTON; SCHIFF BASE; VALINE;

EID: 11144271469     PISSN: 01757571     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00249-004-0406-3     Document Type: Article
Times cited : (15)

References (57)
  • 1
    • 0030808219 scopus 로고    scopus 로고
    • Glutamate-194 to cysteine mutation inhibits fast light-induced proton release in bacteriorhodopsin
    • Balashov SP, Imasheva ES, Ebrey TG, Chen N, Menick DR, Crouch RK (1997) Glutamate-194 to cysteine mutation inhibits fast light-induced proton release in bacteriorhodopsin. Biochemistry 36:8671-8676
    • (1997) Biochemistry , vol.36 , pp. 8671-8676
    • Balashov, S.P.1    Imasheva, E.S.2    Ebrey, T.G.3    Chen, N.4    Menick, D.R.5    Crouch, R.K.6
  • 3
    • 0024289369 scopus 로고
    • Vibrational spectroscopy of bacteriorhodopsin mutants: Light-driven proton transport involves protonation changes of aspartic acid residues 85, 96, and 212
    • Braiman MS, Mogi T, Marti T, Stern LJ, Khorana HG, Rothschild KJ (1988) Vibrational spectroscopy of bacteriorhodopsin mutants: light-driven proton transport involves protonation changes of aspartic acid residues 85, 96, and 212. Biochemistry 27:8516-8520
    • (1988) Biochemistry , vol.27 , pp. 8516-8520
    • Braiman, M.S.1    Mogi, T.2    Marti, T.3    Stern, L.J.4    Khorana, H.G.5    Rothschild, K.J.6
  • 4
    • 0027244529 scopus 로고
    • Estimated acid dissociation constants of the Schiff base, Asp-85, and Arg-82 during the bacteriorhodopsin photocycle
    • Brown LS, Bonet L, Needleman R, Lanyi JK (1993) Estimated acid dissociation constants of the Schiff base, Asp-85, and Arg-82 during the bacteriorhodopsin photocycle. Biophys J 65:124-130
    • (1993) Biophys J , vol.65 , pp. 124-130
    • Brown, L.S.1    Bonet, L.2    Needleman, R.3    Lanyi, J.K.4
  • 5
    • 0028239690 scopus 로고
    • The proton transfers in the cytoplasmic domain of bacteriorhodopsin are facilitated by a cluster of interacting residues
    • Brown LS, Yamazaki Y, Maeda A, Sun L, Needleman R, Lanyi JK (1994) The proton transfers in the cytoplasmic domain of bacteriorhodopsin are facilitated by a cluster of interacting residues. J Mol Biol 239:401-414
    • (1994) J Mol Biol , vol.239 , pp. 401-414
    • Brown, L.S.1    Yamazaki, Y.2    Maeda, A.3    Sun, L.4    Needleman, R.5    Lanyi, J.K.6
  • 7
    • 0024744871 scopus 로고
    • Structural changes in bacteriorhodopsin during proton translocation revealed by neutron diffraction
    • Dencher NA, Dresselhaus D, Zaccai G, Buldt G (1989) Structural changes in bacteriorhodopsin during proton translocation revealed by neutron diffraction. Proc Natl Acad Sci USA 86:7876-7879
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 7876-7879
    • Dencher, N.A.1    Dresselhaus, D.2    Zaccai, G.3    Buldt, G.4
  • 8
    • 0032516460 scopus 로고    scopus 로고
    • Partitioning of free energy gain between the photoisomerized retinal and the protein in bacteriorhodopsin
    • Dioumaev AK, Brown LS, Needleman R, Lanyi JK (1998a) Partitioning of free energy gain between the photoisomerized retinal and the protein in bacteriorhodopsin. Biochemistry 37:9889-9893
    • (1998) Biochemistry , vol.37 , pp. 9889-9893
    • Dioumaev, A.K.1    Brown, L.S.2    Needleman, R.3    Lanyi, J.K.4
  • 9
    • 0032562215 scopus 로고    scopus 로고
    • Existence of a proton transfer chain in bacteriorhodopsin: Participation of Glu-194 in the release of protons to the extracellular surface
    • Dioumaev AK, Richter HT, Brown LS, Tanio M, Tuzi S, Saitô H, Kimura Y, Needleman R, Lanyi JK (1998b) Existence of a proton transfer chain in bacteriorhodopsin: participation of Glu-194 in the release of protons to the extracellular surface. Biochemistry 37:2496-2506
    • (1998) Biochemistry , vol.37 , pp. 2496-2506
    • Dioumaev, A.K.1    Richter, H.T.2    Brown, L.S.3    Tanio, M.4    Tuzi, S.5    Saitô, H.6    Kimura, Y.7    Needleman, R.8    Lanyi, J.K.9
  • 10
    • 0032578378 scopus 로고    scopus 로고
    • Lipid patches in membrane protein oligomers: Crystal structure of the bacteriorhodopsin-lipid complex
    • Essen LO, Siegert R, Lehmann WD, Oesterhelt D (1998) Lipid patches in membrane protein oligomers: crystal structure of the bacteriorhodopsin-lipid complex. Proc Natl Acad Sci USA 95:11673-11678
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 11673-11678
    • Essen, L.O.1    Siegert, R.2    Lehmann, W.D.3    Oesterhelt, D.4
  • 11
    • 0029737389 scopus 로고    scopus 로고
    • Arginine-82 regulates the pKa of the group responsible for the light-driven proton release in bacteriorhodopsin
    • Govindjee R, Misra S, Balashov SP, Ebrey TG, Crouch RK, Menick DR (1996) Arginine-82 regulates the pKa of the group responsible for the light-driven proton release in bacteriorhodopsin. Biophys J 71:1011-1023
    • (1996) Biophys J , vol.71 , pp. 1011-1023
    • Govindjee, R.1    Misra, S.2    Balashov, S.P.3    Ebrey, T.G.4    Crouch, R.K.5    Menick, D.R.6
  • 13
    • 0031684846 scopus 로고    scopus 로고
    • Structural characterization of the L-to-M transition of the bacteriorhodopsin photocycle
    • Hendrickson FM, Burkard F, Glaeser RM (1998) Structural characterization of the L-to-M transition of the bacteriorhodopsin photocycle. Biophys J 75:1446-1454
    • (1998) Biophys J , vol.75 , pp. 1446-1454
    • Hendrickson, F.M.1    Burkard, F.2    Glaeser, R.M.3
  • 15
    • 0030813030 scopus 로고    scopus 로고
    • The last phase of the reprotonation switch in bacteriorhodopsin: The transition between the M-type and the N-type protein conformation depends on hydration
    • Kamikubo H, Oka T, Imamoto Y, Tokunaga F, Lanyi JK, Kataoka M (1997) The last phase of the reprotonation switch in bacteriorhodopsin: the transition between the M-type and the N-type protein conformation depends on hydration. Biochemistry 36:12282-12287
    • (1997) Biochemistry , vol.36 , pp. 12282-12287
    • Kamikubo, H.1    Oka, T.2    Imamoto, Y.3    Tokunaga, F.4    Lanyi, J.K.5    Kataoka, M.6
  • 18
    • 0025976082 scopus 로고
    • Time-resolved X-ray diffraction study of structural changes associated with the photocycle of bacteriorhodopsin
    • Koch MH, Dencher NA, Oesterhelt D, Plohn HJ, Rapp G, Buldt G (1991) Time-resolved X-ray diffraction study of structural changes associated with the photocycle of bacteriorhodopsin. EMBO J 10:521-526
    • (1991) EMBO J , vol.10 , pp. 521-526
    • Koch, M.H.1    Dencher, N.A.2    Oesterhelt, D.3    Plohn, H.J.4    Rapp, G.5    Buldt, G.6
  • 19
    • 0031282975 scopus 로고    scopus 로고
    • Mechanism of ion transport across membranes. Bacteriorhodopsin as a prototype for proton pumps
    • Lanyi JK (1997) Mechanism of ion transport across membranes. Bacteriorhodopsin as a prototype for proton pumps. J Biol Chem 272:31209-31212
    • (1997) J Biol Chem , vol.272 , pp. 31209-31212
    • Lanyi, J.K.1
  • 23
    • 0026094796 scopus 로고
    • Crystallographic characterization by X-ray diffraction of the M-intermediate from the photo-cycle of bacteriorhodopsin at room temperature
    • Nakasako M, Kataoka M, Amemiya Y, Tokunaga F (1991) Crystallographic characterization by X-ray diffraction of the M-intermediate from the photo-cycle of bacteriorhodopsin at room temperature. FEBS Lett 292:73-75
    • (1991) FEBS Lett , vol.292 , pp. 73-75
    • Nakasako, M.1    Kataoka, M.2    Amemiya, Y.3    Tokunaga, F.4
  • 24
    • 0016376428 scopus 로고
    • Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane
    • Oesterhelt D, Stoeckenius W (1974) Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane. Methods Enzymol 31:667-678
    • (1974) Methods Enzymol , vol.31 , pp. 667-678
    • Oesterhelt, D.1    Stoeckenius, W.2
  • 25
    • 0031296422 scopus 로고    scopus 로고
    • X-ray diffraction studies of bacteriorhodopsin. Determination of the position of mercury label at several engineered cysteine residues
    • Oka T, Kamikubo H, Tokunaga F, Lanyi JK, Needleman R, Kataoka M (1997) X-ray diffraction studies of bacteriorhodopsin. Determination of the position of mercury label at several engineered cysteine residues. Photochem Photobiol 66:768-773
    • (1997) Photochem Photobiol , vol.66 , pp. 768-773
    • Oka, T.1    Kamikubo, H.2    Tokunaga, F.3    Lanyi, J.K.4    Needleman, R.5    Kataoka, M.6
  • 26
    • 0000900292 scopus 로고
    • A synthetic medium for extremely halophilic bacteria
    • Onishi H, McCance EM, Gibbons NE (1965) A synthetic medium for extremely halophilic bacteria. Can J Microbiol 11:365-373
    • (1965) Can J Microbiol , vol.11 , pp. 365-373
    • Onishi, H.1    McCance, E.M.2    Gibbons, N.E.3
  • 27
    • 0032492706 scopus 로고    scopus 로고
    • Bacteriorhodopsin's intermolecular proton release pathway consists of a hydrogen-bonded network
    • Rammelsberg R, Huhn G, Lübben M, Gerwert K (1998) Bacteriorhodopsin's intermolecular proton release pathway consists of a hydrogen-bonded network. Biochemistry 37:5001-5009
    • (1998) Biochemistry , vol.37 , pp. 5001-5009
    • Rammelsberg, R.1    Huhn, G.2    Lübben, M.3    Gerwert, K.4
  • 28
    • 36749105542 scopus 로고
    • Transverse relaxation of dipolar coupled spin systems under rf irradiation: Detecting motions in solid
    • Rothwell WP, Waugh JS (1981) Transverse relaxation of dipolar coupled spin systems under rf irradiation: detecting motions in solid. J Chem Phys 74:2721-2732
    • (1981) J Chem Phys , vol.74 , pp. 2721-2732
    • Rothwell, W.P.1    Waugh, J.S.2
  • 29
    • 84989629173 scopus 로고
    • 13C chemical shifts: A new means of conformational characterization as obtained by high-resolution solid-state NMR
    • 13C chemical shifts: a new means of conformational characterization as obtained by high-resolution solid-state NMR. Magn Reson Chem 24:835-852
    • (1986) Magn Reson Chem , vol.24 , pp. 835-852
    • Saitô, H.1
  • 30
    • 77956853496 scopus 로고
    • High-resolution solid-state NMR studies of synthetic and biological macromolecules
    • Saitô H, Ando I (1989) High-resolution solid-state NMR studies of synthetic and biological macromolecules. Annu Rep NMR Spectrosc 21:209-290
    • (1989) Annu Rep NMR Spectrosc , vol.21 , pp. 209-290
    • Saitô, H.1    Ando, I.2
  • 31
    • 77956739241 scopus 로고    scopus 로고
    • Empirical versus nonempirical evaluation of secondary structure of fibrous and membrane protein by solid-state NMR: A practical approach
    • Saitô H, Tuzi S, Naito A (1998) Empirical versus nonempirical evaluation of secondary structure of fibrous and membrane protein by solid-state NMR: a practical approach. Annu Rep NMR Spectrosc 36:79-121
    • (1998) Annu Rep NMR Spectrosc , vol.36 , pp. 79-121
    • Saitô, H.1    Tuzi, S.2    Naito, A.3
  • 38
    • 0030901231 scopus 로고    scopus 로고
    • The tertiary structural changes in bacteriorhodopsin occur between M states: X-ray diffraction and Fourier transform infrared spectroscopy
    • Sass HJ, Schachowa IW, Raap G, Koch MH, Oesterhelt D, Dencher NA (1997) The tertiary structural changes in bacteriorhodopsin occur between M states: X-ray diffraction and Fourier transform infrared spectroscopy. EMBO J 16:1484-1491
    • (1997) EMBO J , vol.16 , pp. 1484-1491
    • Sass, H.J.1    Schachowa, I.W.2    Raap, G.3    Koch, M.H.4    Oesterhelt, D.5    Dencher, N.A.6
  • 40
    • 0035823064 scopus 로고    scopus 로고
    • pK(a) Calculation suggest storage of an excess proton in a hydrogen-bonded water network in bacteriorhodopsin
    • Spassov VZ, Luecke H, Gerwert K, Bashford, D (2001) pK(a) Calculation suggest storage of an excess proton in a hydrogen-bonded water network in bacteriorhodopsin. J Mol Biol 312:203-219
    • (2001) J Mol Biol , vol.312 , pp. 203-219
    • Spassov, V.Z.1    Luecke, H.2    Gerwert, K.3    Bashford, D.4
  • 41
    • 0027439826 scopus 로고
    • Electron diffraction analysis of structural changes in the photocycle of bacteriorhodopsin
    • Subramaniam S, Gerstein M, Oesterhelt D, Henderson R (1993) Electron diffraction analysis of structural changes in the photocycle of bacteriorhodopsin. EMBO J 12:1-8
    • (1993) EMBO J , vol.12 , pp. 1-8
    • Subramaniam, S.1    Gerstein, M.2    Oesterhelt, D.3    Henderson, R.4
  • 43
    • 0000570050 scopus 로고
    • Slow molecular motion detected in the NMR spectra of rotating solids
    • Suwelack D, Rothwell WP, Waught JS (1980) Slow molecular motion detected in the NMR spectra of rotating solids. J Chem Phys 73:2559-2569
    • (1980) J Chem Phys , vol.73 , pp. 2559-2569
    • Suwelack, D.1    Rothwell, W.P.2    Waught, J.S.3
  • 46
    • 0027331560 scopus 로고
    • 13C]Leu and Val-labelled bacteriorhodopsin: Conformation and dynamics of transmembrane helices, loops and termini and hydration-induced conformational change
    • 13C]Leu and Val-labelled bacteriorhodopsin: conformation and dynamics of transmembrane helices, loops and termini and hydration-induced conformational change. Eur J Biochem 218:837-844
    • (1993) Eur J Biochem , vol.218 , pp. 837-844
    • Tuzi, S.1    Naito, A.2    Saitô, H.3
  • 50
    • 0034658269 scopus 로고    scopus 로고
    • Structure of the bacteriorhodopsin mutant F219L N intermediate revealed by electron crystallography
    • Vonck J (2000) Structure of the bacteriorhodopsin mutant F219L N intermediate revealed by electron crystallography. EMBO J 19:2152-2160
    • (2000) EMBO J , vol.19 , pp. 2152-2160
    • Vonck, J.1
  • 51
    • 0032579445 scopus 로고    scopus 로고
    • Structure and hydration of the M-state of the bacteriorhodopsin mutant D96N studied by neutron diffraction
    • Weik M, Zaccai G, Dencher NA, Oesterhelt D, Hauss T (1998) Structure and hydration of the M-state of the bacteriorhodopsin mutant D96N studied by neutron diffraction. J Mol Biol 275:625-634
    • (1998) J Mol Biol , vol.275 , pp. 625-634
    • Weik, M.1    Zaccai, G.2    Dencher, N.A.3    Oesterhelt, D.4    Hauss, T.5
  • 55
    • 0029883202 scopus 로고    scopus 로고
    • Hydrogen bonds of water and C = O groups coordinate long-range structural changes in the L photointermediate of bacteriorhodopsin
    • Yamazaki Y, Tuzi S, Saitô H, Kandori H, Needleman R, Lanyi JK, Maeda A (1996) Hydrogen bonds of water and C = O groups coordinate long-range structural changes in the L photointermediate of bacteriorhodopsin. Biochemistry 35:4063-4068
    • (1996) Biochemistry , vol.35 , pp. 4063-4068
    • Yamazaki, Y.1    Tuzi, S.2    Saitô, H.3    Kandori, H.4    Needleman, R.5    Lanyi, J.K.6    Maeda, A.7
  • 56
    • 0032502007 scopus 로고    scopus 로고
    • Interaction of the protonated Schiff base with the peptide backbone of valine 49 and the intervening water molecule in the N photointermediate of bacteriorhodopsin
    • Yamazaki Y, Kandori H, Needleman R, Lanyi JK, Maeda A (1998) Interaction of the protonated Schiff base with the peptide backbone of valine 49 and the intervening water molecule in the N photointermediate of bacteriorhodopsin. Biochemistry 37:1559-1564
    • (1998) Biochemistry , vol.37 , pp. 1559-1564
    • Yamazaki, Y.1    Kandori, H.2    Needleman, R.3    Lanyi, J.K.4    Maeda, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.