메뉴 건너뛰기




Volumn 144, Issue 1-2, 2003, Pages 24-50

A statistical approach to computer processing of cryo-electron microscope images: Virion classification and 3-D reconstruction

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CRYOELECTRON MICROSCOPY; DENSITY; FLOCKHOUSE VIRUS; IMAGE PROCESSING; INFORMATION PROCESSING; MICROSCOPE IMAGE; NUDAURELIA OMEGA CAPENSIS VIRUS; PRIORITY JOURNAL; STATISTICAL MODEL; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING; VIRION; VIRUS; VIRUS CAPSID; VIRUS PARTICLE;

EID: 0345414583     PISSN: 10478477     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jsb.2003.09.023     Document Type: Article
Times cited : (47)

References (41)
  • 1
    • 84976001159 scopus 로고
    • On the symmetries of spherical harmonics
    • Altmann S.L. On the symmetries of spherical harmonics. Proc. Camb. Phil. Soc. 53:1957;343-367.
    • (1957) Proc. Camb. Phil. Soc. , vol.53 , pp. 343-367
    • Altmann, S.L.1
  • 2
    • 1842409555 scopus 로고    scopus 로고
    • Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy
    • Böttcher B., Wynne S.A., Crowther R.A. Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy. Nature. 386(6620):1997;88-91.
    • (1997) Nature , vol.386 , Issue.6620 , pp. 88-91
    • Böttcher, B.1    Wynne, S.A.2    Crowther, R.A.3
  • 3
    • 0032712359 scopus 로고    scopus 로고
    • Adding the third dimension to virus life cycles: Three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs
    • Baker T.S., Olson N.H., Fuller S.D. Adding the third dimension to virus life cycles: Three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs. Microbiol. Mol. Biol. Rev. 63(4):1999;862-922.
    • (1999) Microbiol. Mol. Biol. Rev. , vol.63 , Issue.4 , pp. 862-922
    • Baker, T.S.1    Olson, N.H.2    Fuller, S.D.3
  • 4
    • 0034625320 scopus 로고    scopus 로고
    • Large conformational changes in the maturation of a simple RNA virus, Nudaurelia capensis ω Virus ( NωV )
    • Canady M.A., Tihova M., Hanzlik T.N., Johnson J.E., Yeager M. Large conformational changes in the maturation of a simple RNA virus, Nudaurelia capensis. ω Virus ( NωV ) J. Mol. Biol. 299:2000;573-584.
    • (2000) J. Mol. Biol. , vol.299 , pp. 573-584
    • Canady, M.A.1    Tihova, M.2    Hanzlik, T.N.3    Johnson, J.E.4    Yeager, M.5
  • 5
    • 0029878835 scopus 로고    scopus 로고
    • Special issue: Advances in computational image processing for microscopy
    • Carragher B., Smith P.R. Special issue: Advances in computational image processing for microscopy. J. Struct. Biol. 116(1):1996;1-249.
    • (1996) J. Struct. Biol. , vol.116 , Issue.1 , pp. 1-249
    • Carragher, B.1    Smith, P.R.2
  • 6
    • 0344960949 scopus 로고    scopus 로고
    • Special issue: Single-particle analysis
    • Chiu W., Ludtke S. Special issue: Single-particle analysis. J. Struct. Biol. 133(2/3):2001;89-266.
    • (2001) J. Struct. Biol. , vol.133 , Issue.2-3 , pp. 89-266
    • Chiu, W.1    Ludtke, S.2
  • 8
    • 0004158133 scopus 로고
    • Methods of Numerical Integration
    • Orlando: Academic Press
    • Davis P.J., Rabinowitz P. Methods of Numerical Integration. second ed. 1984;Academic Press, Orlando.
    • (1984) Second Ed.
    • Davis, P.J.1    Rabinowitz, P.2
  • 9
    • 0034245578 scopus 로고    scopus 로고
    • Ab initio reconstruction and experimental design for cryo-electron microscopy
    • Doerschuk P.C., Johnson J.E. Ab initio reconstruction and experimental design for cryo-electron microscopy. IEEE Trans. Info. Theory. 46(5):2000;1714-1729.
    • (2000) IEEE Trans. Info. Theory , vol.46 , Issue.5 , pp. 1714-1729
    • Doerschuk, P.C.1    Johnson, J.E.2
  • 10
  • 11
    • 0344270228 scopus 로고
    • The Fourier transform of an electron micrograph - First order and second order theory of image formation
    • R. Barer, Cosslett V.E. London and New York: Academic Press
    • Erickson H.P. The Fourier transform of an electron micrograph - First order and second order theory of image formation. Barer R., Cosslett V.E. Advances in Optical and Electron Microscopy. vol. 5:1973;163-199 Academic Press, London and New York.
    • (1973) Advances in Optical and Electron Microscopy , vol.5 , pp. 163-199
    • Erickson, H.P.1
  • 12
    • 0027518457 scopus 로고
    • Ordered duplex RNA controls capsid architecture in an icosahedral animal virus
    • Fisher A.J., Johnson J.E. Ordered duplex RNA controls capsid architecture in an icosahedral animal virus. Nature. 361:1993;176-179.
    • (1993) Nature , vol.361 , pp. 176-179
    • Fisher, A.J.1    Johnson, J.E.2
  • 13
    • 0029975088 scopus 로고    scopus 로고
    • SPIDER and WEB: Processing and visualization of images in 3-D microscopy and rebated fields
    • Frank J., Radermacher M., Penczek P., Zhu J., Li Y., Ladjadj M., Leith A. SPIDER and WEB: Processing and visualization of images in 3-D microscopy and rebated fields. J. Struct. Biol. 116:1996;190-199 http://www.wadsworth.org/ resnres/frank.htm.
    • (1996) J. Struct. Biol. , vol.116 , pp. 190-199
    • Frank, J.1    Radermacher, M.2    Penczek, P.3    Zhu, J.4    Li, Y.5    Ladjadj, M.6    Leith, A.7
  • 14
    • 0000313739 scopus 로고
    • Exact filters for general geometry three dimensional reconstruction
    • Harauz G., van Heel M. Exact filters for general geometry three dimensional reconstruction. Optik. 73(4):1986;146-156.
    • (1986) Optik , vol.73 , Issue.4 , pp. 146-156
    • Harauz, G.1    Van Heel, M.2
  • 15
    • 2442519574 scopus 로고
    • Classical Electrodynamics
    • New York: John Wiley
    • Jackson J.D. Classical Electrodynamics. second ed. 1975;John Wiley, New York.
    • (1975) Second Ed.
    • Jackson, J.D.1
  • 16
    • 0022355016 scopus 로고
    • Three-dimensional reconstruction of the shape of human wart virus using spatial correlations
    • Kam Z., Gafni I. Three-dimensional reconstruction of the shape of human wart virus using spatial correlations. Ultramicroscopy. 17:1985;251-262.
    • (1985) Ultramicroscopy , vol.17 , pp. 251-262
    • Kam, Z.1    Gafni, I.2
  • 17
    • 0000694072 scopus 로고
    • Polyhedral harmonics
    • Laporte O. Polyhedral harmonics. Z. Naturforschg. 3a:1948;447-456.
    • (1948) Z. Naturforschg. , vol.3 , pp. 447-456
    • Laporte, O.1
  • 18
    • 0004029130 scopus 로고    scopus 로고
    • Theory of Point Estimation
    • New York: Springer-Verlag
    • Lehmann E.L., Casella G. Theory of Point Estimation. second ed. 1998;Springer-Verlag, New York.
    • (1998) Second Ed.
    • Lehmann, E.L.1    Casella, G.2
  • 19
    • 0021316199 scopus 로고
    • Projected structure of unstained, frozen-hydrated T-layer of Bacillus brevis
    • Lepault J., Pitt T. Projected structure of unstained, frozen-hydrated T-layer of Bacillus brevis. EMBO J. 3(1):1984;101-105.
    • (1984) EMBO J. , vol.3 , Issue.1 , pp. 101-105
    • Lepault, J.1    Pitt, T.2
  • 21
    • 0003056635 scopus 로고
    • Image analysis of electron micrographs
    • P.W. Hawkes, & U. Valdrè. New York: Academic Press. (Chapter 7)
    • Moody M.F. Image analysis of electron micrographs. Hawkes P.W., Valdrè U. Biophysical Electron Microscopy: Basic Concepts and Modern Techniques. 1990;145-287 Academic Press, New York. (Chapter 7).
    • (1990) Biophysical Electron Microscopy: Basic Concepts and Modern Techniques , pp. 145-287
    • Moody, M.F.1
  • 23
    • 0030576341 scopus 로고    scopus 로고
    • The 2.8 Å structure of a T=4 animal virus and its implications for membrane translocation of RNA
    • Munshi S., Liljas L., Cavarelli J., Bomu W., McKinney B., Reddy V., Johnson J.E. The 2.8 Å structure of a. T=4 animal virus and its implications for membrane translocation of RNA J. Mol. Biol. 261(1):1996;1-10.
    • (1996) J. Mol. Biol. , vol.261 , Issue.1 , pp. 1-10
    • Munshi, S.1    Liljas, L.2    Cavarelli, J.3    Bomu, W.4    McKinney, B.5    Reddy, V.6    Johnson, J.E.7
  • 24
    • 0000167776 scopus 로고    scopus 로고
    • Appendix: Measures of resolution using Fourier shell correlation
    • Appendix to Malhotra et al. (1998)
    • Penczek P. Appendix: Measures of resolution using Fourier shell correlation. J. Struct. Biol. 280:1998;115-116. Appendix to Malhotra et al. (1998).
    • (1998) J. Struct. Biol. , vol.280 , pp. 115-116
    • Penczek, P.1
  • 25
    • 0004161838 scopus 로고
    • Numerical Recipes in C: The Art of Scientific Computing
    • Cambridge: Cambridge University Press
    • Press W.H., Flannery B.P., Teukolsky S.A., Vetterling W.T. Numerical Recipes in C: The Art of Scientific Computing. second ed. 1992;Cambridge University Press, Cambridge.
    • (1992) Second Ed.
    • Press, W.H.1    Flannery, B.P.2    Teukolsky, S.A.3    Vetterling, W.T.4
  • 26
    • 0024250191 scopus 로고    scopus 로고
    • Three-dimensional reconstructions from electron micrographs of disordered specimens: I. Method
    • Provencher S.W., Vogel R.H. Three-dimensional reconstructions from electron micrographs of disordered specimens: I. Method. Ultramicroscopy. 25:1998;209-222.
    • (1998) Ultramicroscopy , vol.25 , pp. 209-222
    • Provencher, S.W.1    Vogel, R.H.2
  • 28
    • 0002170585 scopus 로고
    • The theoretical resolution limit of the electron microscope
    • Scherzer O. The theoretical resolution limit of the electron microscope. J. Appl. Phys. 20:1949;20-29.
    • (1949) J. Appl. Phys. , vol.20 , pp. 20-29
    • Scherzer, O.1
  • 30
    • 0023820449 scopus 로고
    • Contrast transfer for frozen-hydrated specimens: Determination from pairs of defocused images
    • Toyoshima C., Unwin N. Contrast transfer for frozen-hydrated specimens: Determination from pairs of defocused images. Ultramicroscopy. 25(4):1988;279-292.
    • (1988) Ultramicroscopy , vol.25 , Issue.4 , pp. 279-292
    • Toyoshima, C.1    Unwin, N.2
  • 31
    • 0023090371 scopus 로고
    • Similarity measures between images
    • van Heel M. Similarity measures between images. Ultramicroscopy. 21:1987;95-100.
    • (1987) Ultramicroscopy , vol.21 , pp. 95-100
    • Van Heel, M.1
  • 33
    • 0024220731 scopus 로고
    • Three-dimensional reconstructions from electron micrographs of disordered specimens: II. Implementation and results
    • Vogel R.H., Provencher S.W. Three-dimensional reconstructions from electron micrographs of disordered specimens: II. Implementation and results. Ultramicroscopy. 25:1988;223-240.
    • (1988) Ultramicroscopy , vol.25 , pp. 223-240
    • Vogel, R.H.1    Provencher, S.W.2
  • 34
    • 0022539125 scopus 로고
    • Envelope structure of Semliki Forest virus recosntructed from cryo-electron micrographs
    • Vogel R.H., Provencher S.W., von Bonsdorff C.-H., Adrian M., Dubochet J. Envelope structure of Semliki Forest virus recosntructed from cryo-electron micrographs. Nature. 320:1986;533-535.
    • (1986) Nature , vol.320 , pp. 533-535
    • Vogel, R.H.1    Provencher, S.W.2    Von Bonsdorff, C.-H.3    Adrian, M.4    Dubochet, J.5
  • 35
    • 0034703226 scopus 로고    scopus 로고
    • Topologically linked protein rings in the bacteriophage HK97 capsid
    • Wikoff W.R., Liljas L., Duda R.L., Tsuruta H., Hendrix R.W., Johnson J.E. Topologically linked protein rings in the bacteriophage HK97 capsid. Science. 289(5487):2000;2129-2133.
    • (2000) Science , vol.289 , Issue.5487 , pp. 2129-2133
    • Wikoff, W.R.1    Liljas, L.2    Duda, R.L.3    Tsuruta, H.4    Hendrix, R.W.5    Johnson, J.E.6
  • 36
    • 0035783274 scopus 로고    scopus 로고
    • An ab initio algorithm for low-resolution 3-D reconstructions from cryo electron microscopy images
    • Yin Z., Zheng Y., Doerschuk P.C. An ab initio algorithm for low-resolution 3-D reconstructions from cryo electron microscopy images. J. Struct. Biol. 133(2/3):2001;132-142.
    • (2001) J. Struct. Biol. , vol.133 , Issue.2-3 , pp. 132-142
    • Yin, Z.1    Zheng, Y.2    Doerschuk, P.C.3
  • 38
    • 0002473986 scopus 로고    scopus 로고
    • Explicit orthonormal fixed bases for spaces of functions that are totally symmetric under the rotational symmetries of a Platonic solid
    • Zheng Y., Doerschuk P.C. Explicit orthonormal fixed bases for spaces of functions that are totally symmetric under the rotational symmetries of a Platonic solid. Acta Cryst. A. 52:1996;221-235.
    • (1996) Acta Cryst. a , vol.52 , pp. 221-235
    • Zheng, Y.1    Doerschuk, P.C.2
  • 39
    • 0034353699 scopus 로고    scopus 로고
    • Explicit computation of orthonormal symmetrized harmonics with application to the identity representation of the icosahedral group
    • Zheng Y., Doerschuk P.C. Explicit computation of orthonormal symmetrized harmonics with application to the identity representation of the icosahedral group. SIAM J. Math. Anal. 32(3):2000;538-554.
    • (2000) SIAM J. Math. Anal. , vol.32 , Issue.3 , pp. 538-554
    • Zheng, Y.1    Doerschuk, P.C.2
  • 40
    • 0029149195 scopus 로고
    • Determination of three-dimensional low-resolution viral structure from solution X-ray scattering data
    • Zheng Y., Doerschuk P.C., Johnson J.E. Determination of three-dimensional low-resolution viral structure from solution X-ray scattering data. Biophys. J. 69(2):1995;619-639.
    • (1995) Biophys. J. , vol.69 , Issue.2 , pp. 619-639
    • Zheng, Y.1    Doerschuk, P.C.2    Johnson, J.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.