Elements of scientific visualization in basic neuroscience research

BioScience

Volumn 54, Issue 12, 2004, Pages 1127-1137

  Albensi, Benedict C ^a,c   Ilkanich, Erin V ^b,c   Dini, Gabriele ^b   Janigro, Damir ^b  

^a UNIVERSITY OF MANITOBA   (Canada)

^b LERNER RESEARCH INSTITUTE   (United States)

^c CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Brain; Imaging; Neuroscience; Pitfalls; Visualization

Indexed keywords

EID: 11144232959     PISSN: 00063568     EISSN: None     Source Type: Journal    
DOI: 10.1641/0006-3568(2004)054[1127:EOSVIB]2.0.CO;2     Document Type: Short Survey

References (51)

1. Albensi BC, Knoblach SM, Chew BGM, O'Reilly MP, Faden AI, Pekar JJ. 2000. Diffusion and high resolution MRI of traumatic brain injury in rats: Time course and correlation with histology. Experimental Neurology 162: 61-72.
2. Alexandrov AV, Joseph M. 2000. Transcranial doppler: An overview of its clinical applications. Internet Journal of Emergency and Intensive Care Medicine 4(1). (26 October 2004; www.ispub.com/journals/IJEICM/Vol4N1/tcd.htm)
3. Batiste DL, Kirkley A, Laverty S, Thain LM, Spouge AR, Gati JS, Foster PJ, Holdsworth DW. 2004. High-resolution MRI and micro-CT in an ex vivo rabbit anterior cruciate ligament transection model of osteoarthritis. Osteoarthritis Cartilage 12:614-626.
4. Bergles DE, Jahr CE. 1998. Glial contribution to glutamate uptake at Schaffer collateral-commissural synapses in the hippocampus. Journal of Neuroscience 18: 7709-7716.
5. Bockisch A, Beyer T, Antoch G, Freudenberg LS, Kuhl H, Debatin JF, Muller SP. 2004. Positron emission tomography/computed tomography-imaging protocols, artifacts, and pitfalls. Molecular Imaging and Biology 6:188-199.
6. Buendia B, Courvalin JC, Collas P. 2001. Dynamics of the nuclear envelope at mitosis and during apoptosis. Cellular and Molecular Life Sciences 58: 1781-1789.
7. Clark ND, Adams C, Lawton T, Cruickshank AR, Wood K. 2004. The Elgin Marvel: Using magnetic resonance imaging to look at a moldic fossil from the Permian of Elgin, Scotland, UK. Magnetic Resonance Imaging 22: 269-273.
8. D'Ambrosio R, Wenzel J, Schwartzkroin PA, McKhann GMII, Janigro D. 1998. Functional specialization and topographic segregation of hippocampal astrocytes. Journal of Neuroscience 18: 4425-4438.
9. De Clerck NM, Meurrens K, Weiler H, Van Dyck D, Van Houtte G, Terpstra P, Postnov AA. 2004. High-resolution X-ray microtomography for the detection of lung tumors in living mice. Neoplasia 6: 374-379.
10. Dombrowski SM, Desai SY, Marroni M, Cucullo L, Goodrich K, Bingaman W, Mayberg M, Bengez L, Janigro D. 2001. Overexpression of multiple drug resistance genes in endothelial cells from patients with refractory epilepsy. Epilepsia 42: 1501-1506.
11. Emptage NJ. 2001. Fluorescent imaging in living systems. Current Opinion in Pharmacology 1: 521-525.
12. Friedl P. 2004. Dynamic imaging of cellular interactions with extracellular matrix. Histochemistry and Cell Biology 122:183-190.
13. Gillard JH, Papadakis NG, Martin K, Price CJ, Warburton EA, Antoun NM, Huang CL, Carpenter TA, Pickard JD. 2001. MR diffusion tensor imaging of white matter tract disruption in stroke at 3 T. British Journal of Radiology 74: 642-647.
14. Gozansky EK, Ezell EL, Budelmann BU, Quast MJ. 2003. Magnetic resonance histology: In situ single cell imaging of receptor cells in an invertebrate (Lolliguncula brevis, Cephalopoda) sense organ. Magnetic Resonance Imaging 21:1019-1022.
15. Grinvald A, Manker A, Segal M. 1982. Visualization of the spread of electrical activity in rat hippocampal slices by voltage sensitive optic probes. Journal of Physiology 333: 269-291.
16. Grinvald A, Segal M, Kuhnt U, Hildesheim R, Manker A, Anglister L, Freeman JA. 1986. Real-time optical mapping of neuronal activity in vertebrate CNS in vitro and in vivo. Society of General Physiologists Series 40: 165-197.
17. Groot-Wassink T, Aboagye EO, Wang Y, Lemoine NR, Keith WN, Vassaux G. 2004. Noninvasive imaging of the transcriptional activities of human telomerase promoter fragments in mice. Cancer Research 64:4906-4911.
18. Guadagno JV, Calautti C, Baron JC. 2003. Progress in imaging stroke: Emerging clinical applications. British Medical Bulletin 65:145-157.
19. Hill DK, Keynes RD. 1949. Opacity changes in stimulated nerve. Journal of Physiology 108:278-281.
20. Hochman DW, Baraban SC, Owens JW, Schwartzkroin PA. 1995. Dissociation of synchronization and excitability in furosemide blockade of epileptiform activity. Science 270: 99-102.
21. Hochman DW, D'Ambrosio R, Janigro D, Schwartzkroin PA. 1999. Extracellular chloride and the maintenance of spontaneous epileptiform activity in rat hippocampal slices. Journal of Neurophysiology 81:49-59.
22. + uptake in glia prevents long-term depression maintenance and causes epileptiform activity. Journal of Neuroscience 17: 2813-2824.
23. Jones RS, Waldman AD. 2004. 1H-MRS evaluation of metabolism in Alzheimer's disease and vascular dementia. Neurological Research 26: 488-495.
24. Kapoor V, McCook BM, Torok FS. 2004. An introduction to PET-CT imaging. Radiographics 24: 523-543.
25. Kawano H, Nabekawa Y, Suda A, Oishi Y, Mizuno H, Miyawaki A, Midorikawa K. 2003. Attenuation of photobleaching in two-photon excitation fluorescence from green fluorescent protein with shaped excitation pulses. Biochemical and Biophysical Research Communications 311: 592-596.
26. Krout KE, Jenkins JM, Loewy AD. 2002. High-resolution scanner for neuroanatomical analysis. Journal of Neuroscience Methods 113: 37-40.
27. Lantos PL. 1983. Changing images of the brain. Psychological Medicine 13: 255-266.
28. Lipsitz EC, Veith FJ, Wain RA. 2003. Digital fluoroscopy as a valuable adjunct to open vascular operations. Seminars in Vascular Surgery 16:280-290.
29. Mathis CA, Wang Y, Klunk WE. 2004. Imaging beta-amyloid plaques and neurofibrillary tangles in the aging human brain. Current Pharmaceutical Design 10: 1469-1492.
30. Matthews PM, Jezzard P. 2004. Functional magnetic resonance imaging. Journal of Neurology, Neurosurgery, and Psychiatry 75:6-12.
31. Mazziotta JC. 2001. Brain mapping: Its use in patients with neurological disorders. Revue Neurologique 157: 863-871.
32. Moritani T, et al. 2000. Diffusion-weighted echo-planar MR imaging: Clinical applications and pitfalls - a pictorial essay. Clinical Imaging 24: 181-192.
33. Nowinski WL, Belov D. 2003. The Cerefy Neuroradiology Atlas: A Talairach-Tournoux atlas based tool for analysis of neuroimages available over the internet. NeuroImage 20:50-57.
34. Piston DW 1999. Imaging living cells and tissues by two-photon excitation microscopy. Trends in Cell Biology 9:66-69.
35. Pogge A, Slikker W Jr. 2004. Neuroimaging: New approaches for neurotoxicology. Neurotoxicology 25: 525-531.
36. Rezai AR, Hund M, Kronberg E, Deletis V, Zonenshayn M, Cappel J, Ribary U, Llinas R, Kelly PJ. 1995. Introduction of magnetoencephalography to stereotactic techniques. Stereotactic and Functional Neurosurgery 65: 37-41.
37. Ritman EL. 2002. Molecular imaging in small animals-roles for micro-CT. Journal of Cellular Biochemistry Supplement 39:116-124.
38. Rohde GK, Barnett AS, Basser PJ, Marenco S, Pierpaoli C. 2004. Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI. Magnetic Resonance in Medicine 51:103-114.
39. Roland PE, Zilles K. 1994. Brain atlases - a new research tool. Trends in Neurosciences 17: 458-467.
40. Roselt P, Meikle S, Kassiou M. 2004. The role of positron emission tomography in the discovery and development of new drugs; as studied in laboratory animals. European Journal of Drug Metabolism and Pharmacokinetics 29:1-6.
41. Sadowski M, et al. 2004. Targeting prion amyloid deposits in vivo. Journal of Neuropathology and Experimental Neurology 63: 775-784.
42. Schwartzkroin PA, Baraban SC, Hochman DW. 1998. Osmolarity, ionic flux, and changes in brain excitability. Epilepsy Research 32:275-285.
43. Segal M. 2002. Changing views of Cajal's neuron: The case of the dendritic spine. Progress in Brain Research 136: 101-107.
44. Shimoji K, Ravasi L, Schmidt K, Soto-Montenegro ML, Esaki T, Seidel J, Jagoda E, Sokoloff L, Green MV, Eckelman WC. 2004. Measurement of cerebral glucose metabolic rates in the anesthetized rat by dynamic scanning with 18F-FDG, the ATLAS small animal PET scanner, and arterial blood sampling. Journal of Nuclear Medicine 45:665-672.
45. Sinha S, Misra A, Kumar V, Jagannathan NR, Bal CS, Pandey RM, Singhania R, Deepak. 2004. Proton magnetic resonance spectroscopy and single photon emission computed tomography study of the brain in asymptomatic young hyperlipidaemic Asian Indians in North India show early abnormalities. Clinical Endocrinology 61:182-189.
46. Tauer U. 2002. Advantages and risks of multiphoton microscopy in physiology. Experimental Physiology 87: 709-714.
47. Taylor AL, Cottrell GW, Kleinfeld D, Kristan WB Jr. 2003. Imaging reveals synaptic targets of a swim-terminating neuron in the leech CNS. Journal of Neuroscience 23: 11402-11410.
48. Toga AW, Thompson PM. 2001. Maps of the brain. Anatomical Record, B: The New Anatomist 265: 37-53.
49. Urresta FL, Medina DA, Gaviria M. 2003. Diffusion MRI studies in vascular cognitive impairment and dementia. Revista Brasileira de Psiquiatria 25: 188-191.
50. Wu JC, Chen IY, Wang Y, Tseng JR, Chhabra A, Salek M, Min JJ, Fishbein MC, Crystal R, Gambhir SS. 2004. Molecular imaging of the kinetics of vascular endothelial growth factor gene expression in ischemic myocardium. Circulation 110: 685-691.
51. Yang Y, Tai YC, Siegel S, Newport DF, Bai B, Li Q, Leahy RM, Cherry SR. 2004. Optimization and performance evaluation of the microPET II scanner for in vivo small-animal imaging. Physics in Medicine and Biology 49: 2527-2545.