Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 50, 2004, Pages 17361-17364

  Batada, Nizar N ^a   Westover, Kenneth D ^a   Bushnell, David A ^a   Levitt, Michael ^a   Kornberg, Roger D ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Computation; Electrostatics; Transcription

Indexed keywords

NUCLEOSIDE TRIPHOSPHATE; RNA POLYMERASE II;

ARTICLE; COMPUTER SIMULATION; DIFFUSION; ELECTRIC ACTIVITY; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME BINDING; GENETIC TRANSCRIPTION; MATHEMATICAL ANALYSIS; MATHEMATICAL COMPUTING; PRIORITY JOURNAL; RESTRICTION MAPPING; RNA SYNTHESIS;

BINDING SITES; COMPUTER SIMULATION; DIFFUSION; DINUCLEOSIDE PHOSPHATES; ELECTROSTATICS; MODELS, MOLECULAR; PROTEIN STRUCTURE, TERTIARY; RNA POLYMERASE II; THERMODYNAMICS;

EID: 10644237908     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0408168101     Document Type: Article

References (16)

1. Zhang, G., Campbell, E. A., Minakhin, L., Richter, C., Severinov, K. & Darst, S. A. (1999) Cell 98, 811-824.
2. Cramer, P., Bushnell, D. A., Fu, J., Gnatt, A. L., Maier-Davis, B., Thompson, N. E., Burgess, R. R., Edwards, A. M., David, P. R. & Kornberg, R. D. (2000) Science 288, 640-649.
3. Bushnell, D. A., Westover, K. D., Davis, R. E. & Kornberg, R. D. (2004) Science 303, 983-988.
4. Temiakov, D., Patlan, V., Anikin, M., McAllister, W. T., Yokoyama, S. & Vassylyev, D. G. (2004) Cell 116, 381-391.
5. Yin, Y. W. & Steitz, T. A. (2004) Cell 116, 393-404.
6. Shilatifard, A., Conaway, R. C. & Conaway, J. W. (2003) Annu. Rev. Biochem. 72, 693-715.
7. Westover, K. D., Bushnell, D. A. & Kornberg, R. D. (2004) Cell 120, 481-489.
8. Opalka, N., Chlenov, M., Chacon, P., Rice, W. J., Wriggers, W. & Darst, S. A. (2003) Cell 114, 335-345.
9. Kettenberger, H., Armache, K. J. & Cramer, P. (2003) Cell 114, 347-357.
10. Sosunova, E., Sosunov, V., Kozlov, M., Nikiforov, V., Goldfarb, A. & Mustaev, A. (2003) Proc. Natl. Acad. Sci. USA 100, 15469-15474.
11. Sosunov, V., Sosunova, E., Mustaev, A., Bass, I., Nikiforov, V. & Goldfarb, A. (2003) EMBO J. 22, 2234-2244.
12. Baker, N. A., Sept, D., Joseph, S., Holst, M. J. & McCammon, J. A. (2001) Proc. Natl. Acad. Sci. USA 98, 10037-10041.
13. Gardiner, C. W. (1997) Handbook of Stochastic Methods: For Physics, Chemistry, and the Natural Sciences (Springer, Berlin).
14. Bochner, B. R. & Ames, B. N. (1982) J. Biol. Chem. 257, 9759-9769.
15. Wang, M. D., Schnitzer, M. J., Yin, H., Landick, R., Gelles, J. & Block, S. M. (1998) Science 282, 902-907.
16. Gnatt, A. L., Cramer, P., Fu, J., Bushnell, D. A. & Kornberg, R. D. (2001) Science 292, 1876-1882.