-
1
-
-
0034809105
-
-
Recent reviews: (a) Komiyama, M.; Sumaoka, J.; Kuzuya, A.; Yamamoto, Y. Methods Enzymol. 2001, 341, 455-468.
-
(2001)
Methods Enzymol.
, vol.341
, pp. 455-468
-
-
Komiyama, M.1
Sumaoka, J.2
Kuzuya, A.3
Yamamoto, Y.4
-
2
-
-
0001229651
-
-
(b) Trawick, B. N.; Daniher, A. T.; Bashkin, J. K. Chem. Rev. 1998, 98, 939-960.
-
(1998)
Chem. Rev.
, vol.98
, pp. 939-960
-
-
Trawick, B.N.1
Daniher, A.T.2
Bashkin, J.K.3
-
3
-
-
0001055719
-
-
(c) Oivanen, M.; Kuusela, S.; Lönnberg, H. Chem. Rev. 1998, 98, 961-990.
-
(1998)
Chem. Rev.
, vol.98
, pp. 961-990
-
-
Oivanen, M.1
Kuusela, S.2
Lönnberg, H.3
-
4
-
-
0030902181
-
-
(d) Perreault, D. M.; Anslyn, E. V. Angew. Chem., Int. Ed. Engl. 1997, 36, 432-450.
-
(1997)
Angew. Chem., Int. Ed. Engl.
, vol.36
, pp. 432-450
-
-
Perreault, D.M.1
Anslyn, E.V.2
-
5
-
-
0027971137
-
-
(a) Matsumura, K.; Endo, M.; Komiyama, M. J. Chem. Soc., Chem. Commun. 1994, 2019-2020.
-
(1994)
J. Chem. Soc., Chem. Commun.
, pp. 2019-2020
-
-
Matsumura, K.1
Endo, M.2
Komiyama, M.3
-
6
-
-
0029792376
-
-
(b) Hall, J.; Hüsken, D.; Häner, R. Nucleic Acids Res. 1996, 24, 3522-3526.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3522-3526
-
-
Hall, J.1
Hüsken, D.2
Häner, R.3
-
7
-
-
0030800208
-
-
(c) Magda, D.; Wright, M.; Crofts, S.; Lin, A.; Sessler, J. L. J. Am. Chem. Soc. 1997, 119, 6947-6948.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 6947-6948
-
-
Magda, D.1
Wright, M.2
Crofts, S.3
Lin, A.4
Sessler, J.L.5
-
8
-
-
0033559115
-
-
(d) Baker, B. F.; Lot, S. S.; Kringel, J.; Cheng-Flournoy, S.; Villiet, P.; Sasmor, H. M.; Siwkowski, A. M.; Chappell, L. L.; Morrow, J. R. Nucleic Acids Res. 1999, 27, 1547-1551.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1547-1551
-
-
Baker, B.F.1
Lot, S.S.2
Kringel, J.3
Cheng-Flournoy, S.4
Villiet, P.5
Sasmor, H.M.6
Siwkowski, A.M.7
Chappell, L.L.8
Morrow, J.R.9
-
9
-
-
0035873532
-
-
(e) Putnam, W. C.; Daniher, A. T.; Trawick, B. N.; Bashkin, J. K. Nucleic Acids Res. 2001, 29, 2199-2204.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2199-2204
-
-
Putnam, W.C.1
Daniher, A.T.2
Trawick, B.N.3
Bashkin, J.K.4
-
10
-
-
0036738528
-
-
(f) Canaple, L.; Hüsken, D.; Hall, J.; Häner, R. Bioconjugate Chem. 2002, 13, 945-951.
-
(2002)
Bioconjugate Chem.
, vol.13
, pp. 945-951
-
-
Canaple, L.1
Hüsken, D.2
Hall, J.3
Häner, R.4
-
12
-
-
0037335598
-
-
(h) Sakamoto, A.; Tamura, T.; Furukawa, T.; Komatsu, Y.; Ohtsuka, E.; Kitamura, M.; Inoue, H. Nucleic Acids Res. 2003, 31, 1416-1425.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1416-1425
-
-
Sakamoto, A.1
Tamura, T.2
Furukawa, T.3
Komatsu, Y.4
Ohtsuka, E.5
Kitamura, M.6
Inoue, H.7
-
13
-
-
0028943103
-
-
(a) Hovinen, J.; Guzaev, A.; Azhayeva, E.; Azhayev, A.; Lönnberg, H. J. Org. Chem. 1995, 60, 2205-2209.
-
(1995)
J. Org. Chem.
, vol.60
, pp. 2205-2209
-
-
Hovinen, J.1
Guzaev, A.2
Azhayeva, E.3
Azhayev, A.4
Lönnberg, H.5
-
14
-
-
0029665163
-
-
(b) Reynolds, M. A.; Beck, T. A.; Say, P. B.; Schwartz, D. A.; Dwyer, B. P.; Daily, W. J.; Vaghefi, M. M.; Metzler, M. D.; Klem, R. E.; Arnold, L. J., Jr. Nucleic Acids Res. 1996, 24, 760-765.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 760-765
-
-
Reynolds, M.A.1
Beck, T.A.2
Say, P.B.3
Schwartz, D.A.4
Dwyer, B.P.5
Daily, W.J.6
Vaghefi, M.M.7
Metzler, M.D.8
Klem, R.E.9
Arnold Jr., L.J.10
-
15
-
-
0000068223
-
-
(c) Endo, M.; Azuma, Y.; Saga, Y.; Kuzuya, A.; Kawai, G.; Komiyama, M. J. Org. Chem. 1997, 62, 846-852.
-
(1997)
J. Org. Chem.
, vol.62
, pp. 846-852
-
-
Endo, M.1
Azuma, Y.2
Saga, Y.3
Kuzuya, A.4
Kawai, G.5
Komiyama, M.6
-
16
-
-
0034702971
-
-
(d) Beloglazova, N. G.; Sil'nikov, V. N.; Zenkova, M. A.; Vlassov, V. V. FEBS Lett. 2000, 481, 277-280.
-
(2000)
FEBS Lett.
, vol.481
, pp. 277-280
-
-
Beloglazova, N.G.1
Sil'nikov, V.N.2
Zenkova, M.A.3
Vlassov, V.V.4
-
17
-
-
0036346843
-
-
(e) Beloglazova, N. G.; Epanchintsev, A. Yu.; Sil'nikov, V. N.; Zenkova, M. A.; Vlassov, V. V. Mol. Biol. 2002, 36, 581-588.
-
(2002)
Mol. Biol.
, vol.36
, pp. 581-588
-
-
Beloglazova, N.G.1
Epanchintsev, Yu.A.2
Sil'nikov, V.N.3
Zenkova, M.A.4
Vlassov, V.V.5
-
18
-
-
0023364038
-
-
(a) Cech, T. R. Science 1987, 236, 1532-1539,
-
(1987)
Science
, vol.236
, pp. 1532-1539
-
-
Cech, T.R.1
-
19
-
-
0035339966
-
-
(b) Takagi, Y.; Warashina, M.; Stec, J. W.; Yoshinari, K.; Taira, K. Nucleic Acids Res. 2001, 29, 1815-1834.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 1815-1834
-
-
Takagi, Y.1
Warashina, M.2
Stec, J.W.3
Yoshinari, K.4
Taira, K.5
-
21
-
-
0034651754
-
-
Two-site scissions of specific sequences by hairpin-derived twin ribozymes have been reported: (a) Schmidt, C.; Welz, R.; Müller, S. Nucleic Acids Res. 2000, 28, 886-894.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 886-894
-
-
Schmidt, C.1
Welz, R.2
Müller, S.3
-
22
-
-
0038343500
-
-
(b) Welz, R.; Bossmann, K.; Klug, C.; Schmidt, C.; Fritz, H. J.; Müller, S. Angew. Chem., Int. Ed. 2003, 42, 2424-2427.
-
(2003)
Angew. Chem., Int. Ed.
, vol.42
, pp. 2424-2427
-
-
Welz, R.1
Bossmann, K.2
Klug, C.3
Schmidt, C.4
Fritz, H.J.5
Müller, S.6
-
23
-
-
0032997217
-
-
Brookes, A. J. Gene 1999, 234, 177-186.
-
(1999)
Gene
, vol.234
, pp. 177-186
-
-
Brookes, A.J.1
-
25
-
-
0036682101
-
-
(b) Kirk, B. W.; Feinsod, M.; Favis, R.; Kliman, R. M.; Barany, F. Nucleic Acids Res. 2002. 30, 3295-3311.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3295-3311
-
-
Kirk, B.W.1
Feinsod, M.2
Favis, R.3
Kliman, R.M.4
Barany, F.5
-
26
-
-
0032998425
-
-
(c) Lyamichev, V.; Mast, A. L.; Hall, J. G.; Prudent, J. R.; Kaiser, M. W.; Takova, T.; Kwiatkowski, R. W.; Sander, T. J.; de Arruda, M.; Arco, D. A.; Neri, B. P.; Brow, M. A. D. Nat. Biotechnol. 1999, 17, 292-296.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 292-296
-
-
Lyamichev, V.1
Mast, A.L.2
Hall, J.G.3
Prudent, J.R.4
Kaiser, M.W.5
Takova, T.6
Kwiatkowski, R.W.7
Sander, T.J.8
De Arruda, M.9
Arco, D.A.10
Neri, B.P.11
Brow, M.A.D.12
-
27
-
-
0033824460
-
-
(d) Alderborn, A.; Kristofferson, A.; Hammerling, U. Genome Res. 2000, 10, 1249-1258.
-
(2000)
Genome Res.
, vol.10
, pp. 1249-1258
-
-
Alderborn, A.1
Kristofferson, A.2
Hammerling, U.3
-
28
-
-
0036468577
-
-
(a) Lechner, D.; Lathrop, G. M.; Gut, I. G. Curr. Opin. Chem. Biol. 2002, 6, 31-38.
-
(2002)
Curr. Opin. Chem. Biol.
, vol.6
, pp. 31-38
-
-
Lechner, D.1
Lathrop, G.M.2
Gut, I.G.3
-
30
-
-
0031734601
-
-
(c) Ross, P.; Hall, L.; Smirnov, I.; Haff, L. Nat. Biotechnol. 1998, 16, 1347-1351.
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 1347-1351
-
-
Ross, P.1
Hall, L.2
Smirnov, I.3
Haff, L.4
-
31
-
-
0036321025
-
-
(d) Nakai, K.; Habano, W.; Fujita, T.; Nakai, K.; Schnackenberg, J.; Kawazoe, K.; Suwabe, A.; Itoh, C. Hum. Mutat. 2002, 20, 133-138.
-
(2002)
Hum. Mutat.
, vol.20
, pp. 133-138
-
-
Nakai, K.1
Habano, W.2
Fujita, T.3
Nakai, K.4
Schnackenberg, J.5
Kawazoe, K.6
Suwabe, A.7
Itoh, C.8
-
32
-
-
0037102334
-
-
(e) Kim, S.; Edwards, J. R.; Deng, L. Y.; Chung, W.; Ju, J. Y. Nucleic Acids Res. 2002, 30, e85.
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Kim, S.1
Edwards, J.R.2
Deng, L.Y.3
Chung, W.4
Ju, J.Y.5
-
33
-
-
0036517084
-
-
(f) Sauer, S.; Gelfand, D. H.; Boussicault, F.; Bauer, K.; Reichert, F.; Gut, I. G. Nucleic Acids Res. 2002, 30, e22.
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Sauer, S.1
Gelfand, D.H.2
Boussicault, F.3
Bauer, K.4
Reichert, F.5
Gut, I.G.6
-
34
-
-
0035326263
-
-
(g) Zhang, S.; Van Pelt, C. K.; Schultz, G. A. Anal. Chem. 2001, 73, 2117-2125.
-
(2001)
Anal. Chem.
, vol.73
, pp. 2117-2125
-
-
Zhang, S.1
Van Pelt, C.K.2
Schultz, G.A.3
-
35
-
-
0035801363
-
-
(h) Mattes, A.; Seitz, O. Angew. Chem., Int. Ed. 2001, 40, 3178-3181.
-
(2001)
Angew. Chem., Int. Ed.
, vol.40
, pp. 3178-3181
-
-
Mattes, A.1
Seitz, O.2
-
36
-
-
0033032090
-
-
(i) Griffin, T. J.; Hall, J. G.; Prudent, J. R.; Smith, L. M. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 6301-6306.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 6301-6306
-
-
Griffin, T.J.1
Hall, J.G.2
Prudent, J.R.3
Smith, L.M.4
-
37
-
-
0031572434
-
-
(j) Ross, P. L.; Lee, K.; Belgrader, P. Anal. Chem. 1997, 69, 4197-4202.
-
(1997)
Anal. Chem.
, vol.69
, pp. 4197-4202
-
-
Ross, P.L.1
Lee, K.2
Belgrader, P.3
-
38
-
-
0033787023
-
-
(a) Nickerson, D. A.; Taylor, S. L.; Fullerton, S. M.; Weiss, K. M.; Clark, A. G.; Stengård, J. H.; Salomaa, V.; Boerwinkle, E.; Sing, C. F. Genome Res. 2000, 10, 1532-1545.
-
(2000)
Genome Res.
, vol.10
, pp. 1532-1545
-
-
Nickerson, D.A.1
Taylor, S.L.2
Fullerton, S.M.3
Weiss, K.M.4
Clark, A.G.5
Stengård, J.H.6
Salomaa, V.7
Boerwinkle, E.8
Sing, C.F.9
-
39
-
-
0028026997
-
-
(b) Vanduijn, C. M.; Deknifff, P.; Cruts, M.; Wehnert, A.; Havekes, L. M.; Hofman, A.; Vanbroeckhoven, C. Nat. Genet. 1994, 7, 74-78.
-
(1994)
Nat. Genet.
, vol.7
, pp. 74-78
-
-
Vanduijn, C.M.1
Deknifff, P.2
Cruts, M.3
Wehnert, A.4
Havekes, L.M.5
Hofman, A.6
Vanbroeckhoven, C.7
-
40
-
-
0037134811
-
-
(a) Kuzuya, A.; Mizoguchi, R.; Morisawa, F.; Machida, K.; Komiyama, M. J. Am. Chem. Soc. 2002, 124, 6887-6894.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 6887-6894
-
-
Kuzuya, A.1
Mizoguchi, R.2
Morisawa, F.3
Machida, K.4
Komiyama, M.5
-
41
-
-
0036009648
-
-
(b) Kuzuya, A.; Machida, K.; Mizoguchi, R.; Komiyama, M. Bioconjugate Chem. 2002, 13, 365-369.
-
(2002)
Bioconjugate Chem.
, vol.13
, pp. 365-369
-
-
Kuzuya, A.1
Machida, K.2
Mizoguchi, R.3
Komiyama, M.4
-
42
-
-
0037064494
-
-
(c) Kuzuya, A.; Machida, K.; Komiyama, M. Tetrahedron Lett. 2002, 43, 8249-8252.
-
(2002)
Tetrahedron Lett.
, vol.43
, pp. 8249-8252
-
-
Kuzuya, A.1
Machida, K.2
Komiyama, M.3
-
43
-
-
1042270753
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note
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1G simply to facilitate the analysis. The labeling by either FAM or TMR was not employed here. The products were desalted as described in the Experimental Section and directly subjected to the MALDI-TOF MS.
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-
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The RNA in DNA/RNA duplexes is considerably stable against the digestion by lanthanide ions: Kolasa, K. A.; Morrow, J. R.; Sharma, A. P. Inorg. Chem. 1993, 32, 3983-3984.
-
(1993)
Inorg. Chem.
, vol.32
, pp. 3983-3984
-
-
Kolasa, K.A.1
Morrow, J.R.2
Sharma, A.P.3
-
45
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-
1042282250
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note
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The site-selective scission was successful even when the target nucleotide in RNA was abasic (see Supporting Information).
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46
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0037459524
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Another solution to this problem is to use nonnatural nucleotide dP, which forms stable base pairs both with G and with A through its tautomerism (see Kuzuya, A.; Mizoguchi, R.; Morisawa, F.; Komiyama, M. Chem. Commun. 2003, 770-771).
-
(2003)
Chem. Commun.
, pp. 770-771
-
-
Kuzuya, A.1
Mizoguchi, R.2
Morisawa, F.3
Komiyama, M.4
-
47
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note
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To discriminate C/U(T) alteration in genomes, the most appropriate way is to use the complementary strand (sense or antisense strand) as the template for in vitro transcription. Then this alteration can be analyzed in terms of G/ A alteration, which gives rise to a mass difference of 16 (the difference between C and U is ca. 1).
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