메뉴 건너뛰기




Volumn 345, Issue 4, 2005, Pages 717-730

New non-detrimental DNA-binding mutants of the Escherichia coli initiator protein DnaA

Author keywords

ATP DnaA; DNA binding motifs; dnaA(Ts) complementation; mioC promoter regulation; mutagenic PCR

Indexed keywords

AMINO ACID; DNA REPLICATION INITIATION PROTEIN; MUTANT PROTEIN; PROTEIN; UNCLASSIFIED DRUG;

EID: 10044264605     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2004.10.092     Document Type: Article
Times cited : (5)

References (48)
  • 1
    • 0021720088 scopus 로고
    • The dnaA protein complex with the E. coli chromosomal origin (oriC) and other sites
    • R.S. Fuller, B.E. Funnell, and A. Kornberg The dnaA protein complex with the E. coli chromosomal origin (oriC) and other sites Cell 38 1984 889 900
    • (1984) Cell , vol.38 , pp. 889-900
    • Fuller, R.S.1    Funnell, B.E.2    Kornberg, A.3
  • 2
    • 0029088758 scopus 로고
    • Interaction of the initiator protein DnaA of Escherichia coli with its DNA target
    • S. Schaper, and W. Messer Interaction of the initiator protein DnaA of Escherichia coli with its DNA target J. Biol. Chem. 270 1995 17622 17626
    • (1995) J. Biol. Chem. , vol.270 , pp. 17622-17626
    • Schaper, S.1    Messer, W.2
  • 3
    • 0023658349 scopus 로고
    • ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome
    • K. Sekimizu, D. Bramhill, and A. Kornberg ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosome Cell 50 1987 259 265
    • (1987) Cell , vol.50 , pp. 259-265
    • Sekimizu, K.1    Bramhill, D.2    Kornberg, A.3
  • 4
    • 0033229814 scopus 로고    scopus 로고
    • ATP- and ADP-DnaA protein, a molecular switch in gene regulation
    • C. Speck, C. Weigel, and W. Messer ATP- and ADP-DnaA protein, a molecular switch in gene regulation EMBO J. 18 1999 6169 6176
    • (1999) EMBO J. , vol.18 , pp. 6169-6176
    • Speck, C.1    Weigel, C.2    Messer, W.3
  • 5
    • 0035869023 scopus 로고    scopus 로고
    • Mechanism of origin unwinding: Sequential binding of DnaA to double- and single-stranded DNA
    • C. Speck, and W. Messer Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA EMBO J. 20 2001 1469 1476
    • (2001) EMBO J. , vol.20 , pp. 1469-1476
    • Speck, C.1    Messer, W.2
  • 6
    • 1542297764 scopus 로고    scopus 로고
    • Two discriminatory binding sites in the Escherichia coli replication origin are required for DNA strand opening by initiator DnaA-ATP
    • K.C. McGarry, V.T. Ryan, J.E. Grimwade, and A.C. Leonard Two discriminatory binding sites in the Escherichia coli replication origin are required for DNA strand opening by initiator DnaA-ATP Proc. Natl Acad. Sci. USA 101 2004 2811 2816
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 2811-2816
    • McGarry, K.C.1    Ryan, V.T.2    Grimwade, J.E.3    Leonard, A.C.4
  • 7
    • 0035118496 scopus 로고    scopus 로고
    • Bacterial replication initiator DnaA. Rules for DnaA binding and roles of DnaA in origin unwinding and helicase loading
    • W. Messer, F. Blaesing, D. Jakimowicz, M. Krause, J. Majka, and J. Nardmann Bacterial replication initiator DnaA. Rules for DnaA binding and roles of DnaA in origin unwinding and helicase loading Biochimie 83 2001 5 12
    • (2001) Biochimie , vol.83 , pp. 5-12
    • Messer, W.1    Blaesing, F.2    Jakimowicz, D.3    Krause, M.4    Majka, J.5    Nardmann, J.6
  • 8
    • 0023664708 scopus 로고
    • In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome
    • B.E. Funnell, T.A. Baker, and A. Kornberg In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome J. Biol. Chem. 262 1987 10327 10334
    • (1987) J. Biol. Chem. , vol.262 , pp. 10327-10334
    • Funnell, B.E.1    Baker, T.A.2    Kornberg, A.3
  • 9
    • 0033213720 scopus 로고    scopus 로고
    • Replisome assembly at oriC, the replication origin of E. coli, reveals an explanation for initiation sites outside an origin
    • L. Fang, M.J. Davey, and M. O'Donnell Replisome assembly at oriC, the replication origin of E. coli, reveals an explanation for initiation sites outside an origin Mol. Cell 4 1999 541 553
    • (1999) Mol. Cell , vol.4 , pp. 541-553
    • Fang, L.1    Davey, M.J.2    O'Donnell, M.3
  • 10
    • 0030888558 scopus 로고    scopus 로고
    • DnaA initiator - Also a transcription factor
    • W. Messer, and C. Weigel DnaA initiator - also a transcription factor Mol. Microbiol. 24 1997 1 6
    • (1997) Mol. Microbiol. , vol.24 , pp. 1-6
    • Messer, W.1    Weigel, C.2
  • 11
    • 0023238630 scopus 로고
    • Stability and replication control of E. coli minichromosomes
    • A. Løbner-Olesen, T. Atlung, and K.V. Rasmussen Stability and replication control of E. coli minichromosomes J. Bacteriol. 169 1987 2835 2842
    • (1987) J. Bacteriol. , vol.169 , pp. 2835-2842
    • Løbner-Olesen, A.1    Atlung, T.2    Rasmussen, K.V.3
  • 12
    • 0022628252 scopus 로고
    • Dissection of promoter sequences involved in transcriptional activation of the Escherichia coli replication origin
    • A.R. Stuitje, N. Dewind, J.C. Vanderspek, T.H. Pors, and M. Meijer Dissection of promoter sequences involved in transcriptional activation of the Escherichia coli replication origin Nucl. Acids Res. 14 1986 2333 2344
    • (1986) Nucl. Acids Res. , vol.14 , pp. 2333-2344
    • Stuitje, A.R.1    Dewind, N.2    Vanderspek, J.C.3    Pors, T.H.4    Meijer, M.5
  • 13
    • 0022017798 scopus 로고
    • Initiation of replication in Escherichia coli involves dnaA protein regulated transcription within the replication origin
    • H. Lother, R. Kölling, C. Kücherer, and M. Schauzu Initiation of replication in Escherichia coli involves dnaA protein regulated transcription within the replication origin EMBO J. 4 1985 555 560
    • (1985) EMBO J. , vol.4 , pp. 555-560
    • Lother, H.1    Kölling, R.2    Kücherer, C.3    Schauzu, M.4
  • 14
    • 0001053258 scopus 로고    scopus 로고
    • Initiation of chromosome replication
    • F.C. Neidhardt R.I. Curtiss J.L. Ingraham E.C.C. Lin K. Brooks Low W.S. Reznikoff American Society for Microbiology Washington DC*et al.
    • W. Messer, and C. Weigel Initiation of chromosome replication F.C. Neidhardt R.I. Curtiss J.L. Ingraham E.C.C. Lin K. Brooks Low W.S. Reznikoff Escherichia coli and Salmonella: Cellular and Molecular Biology 1996 American Society for Microbiology Washington DC 1578 1601
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 1578-1601
    • Messer, W.1    Weigel, C.2
  • 16
    • 0029030019 scopus 로고
    • The DNA binding domain of the initiator protein DnaA
    • A. Roth, and W. Messer The DNA binding domain of the initiator protein DnaA EMBO J. 14 1995 2106 2111
    • (1995) EMBO J. , vol.14 , pp. 2106-2111
    • Roth, A.1    Messer, W.2
  • 18
    • 0037119995 scopus 로고    scopus 로고
    • The structure of bacterial DnaA: Implications for general mechanisms underlying DNA replication initiation
    • J.P. Erzberger, M.M. Pirruccello, and J.M. Berger The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation EMBO J. 21 2002 4763 4773
    • (2002) EMBO J. , vol.21 , pp. 4763-4773
    • Erzberger, J.P.1    Pirruccello, M.M.2    Berger, J.M.3
  • 19
    • 0034016324 scopus 로고    scopus 로고
    • Analysis of the DNA-binding domain of Escherichia coli DnaA protein
    • F. Blaesing, C. Weigel, M. Welzeck, and W. Messer Analysis of the DNA-binding domain of Escherichia coli DnaA protein Mol. Microbiol. 36 2000 557 569
    • (2000) Mol. Microbiol. , vol.36 , pp. 557-569
    • Blaesing, F.1    Weigel, C.2    Welzeck, M.3    Messer, W.4
  • 20
    • 0031554911 scopus 로고    scopus 로고
    • Novel alleles of the Escherichia coli dnaA gene
    • M.D. Sutton, and J.M. Kaguni Novel alleles of the Escherichia coli dnaA gene J. Mol. Biol. 271 1997 693 703
    • (1997) J. Mol. Biol. , vol.271 , pp. 693-703
    • Sutton, M.D.1    Kaguni, J.M.2
  • 21
    • 0031565989 scopus 로고    scopus 로고
    • The Escherichia coli dnaA gene: Four functional domains
    • M.D. Sutton, and J.M. Kaguni The Escherichia coli dnaA gene: four functional domains J. Mol. Biol. 274 1997 546 561
    • (1997) J. Mol. Biol. , vol.274 , pp. 546-561
    • Sutton, M.D.1    Kaguni, J.M.2
  • 22
    • 0030823757 scopus 로고    scopus 로고
    • Threonine 435 of Escherichia coli DnaA protein confers sequence-specific DNA binding activity
    • M.D. Sutton, and J.M. Kaguni Threonine 435 of Escherichia coli DnaA protein confers sequence-specific DNA binding activity J. Biol. Chem. 272 1997 23017 23024
    • (1997) J. Biol. Chem. , vol.272 , pp. 23017-23024
    • Sutton, M.D.1    Kaguni, J.M.2
  • 23
    • 0002694056 scopus 로고
    • A method for random mutagenesis of a defined DNA segment using a modified polymerase chain reaction
    • D.W. Leung, E. Chen, and D.V. Goeddel A method for random mutagenesis of a defined DNA segment using a modified polymerase chain reaction Technique 1 1989 11 15
    • (1989) Technique , vol.1 , pp. 11-15
    • Leung, D.W.1    Chen, E.2    Goeddel, D.V.3
  • 24
    • 0026749793 scopus 로고
    • Cloning and nucleotide sequence determination of twelve mutant dnaA genes of Escherichia coli
    • F.G. Hansen, S. Koefoed, and T. Atlung Cloning and nucleotide sequence determination of twelve mutant dnaA genes of Escherichia coli Mol. Gen. Genet. 234 1992 14 21
    • (1992) Mol. Gen. Genet. , vol.234 , pp. 14-21
    • Hansen, F.G.1    Koefoed, S.2    Atlung, T.3
  • 25
    • 0023732715 scopus 로고
    • Interaction of DnaA46 protein with a stimulatory protein in replication from the Escherichia coli chromosomal origin
    • D.S. Hwang, and J.M. Kaguni Interaction of DnaA46 protein with a stimulatory protein in replication from the Escherichia coli chromosomal origin J. Biol. Chem. 263 1988 10633 10640
    • (1988) J. Biol. Chem. , vol.263 , pp. 10633-10640
    • Hwang, D.S.1    Kaguni, J.M.2
  • 26
    • 0034011374 scopus 로고    scopus 로고
    • Two types of cold sensitivity associated with the A184→V change in the DnaA protein
    • M. Nyborg, T. Atlung, O. Skovgaard, and F.G. Hansen Two types of cold sensitivity associated with the A184→V change in the DnaA protein Mol. Microbiol. 35 2000 1202 1210
    • (2000) Mol. Microbiol. , vol.35 , pp. 1202-1210
    • Nyborg, M.1    Atlung, T.2    Skovgaard, O.3    Hansen, F.G.4
  • 27
    • 0025310356 scopus 로고
    • DNA recognition by proteins with the helix-turn-helix motif
    • S.C. Harrison, and A.K. Aggarwal DNA recognition by proteins with the helix-turn-helix motif Annu. Rev. Biochem. 59 1990 933 969
    • (1990) Annu. Rev. Biochem. , vol.59 , pp. 933-969
    • Harrison, S.C.1    Aggarwal, A.K.2
  • 28
    • 0024571640 scopus 로고
    • The helix-turn-helix DNA-binding motif
    • R.G. Brennan, and B.W. Matthews The helix-turn-helix DNA-binding motif J. Biol. Chem. 264 1989 1903 1906
    • (1989) J. Biol. Chem. , vol.264 , pp. 1903-1906
    • Brennan, R.G.1    Matthews, B.W.2
  • 29
    • 0032169864 scopus 로고    scopus 로고
    • A novel DNA-binding motif in MarA: The first structure for an AraC family transcriptional activator
    • S. Rhee, R.G. Martin, J.L. Rosner, and D.R. Davies A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator Proc. Natl Acad. Sci. USA 95 1998 10413 10418
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 10413-10418
    • Rhee, S.1    Martin, R.G.2    Rosner, J.L.3    Davies, D.R.4
  • 31
    • 0031596672 scopus 로고    scopus 로고
    • Unique organization of the dnaA region from Prochlorococcus marinus CCMP1375, a marine cyanobacterium
    • S. Richter, W.R. Hess, M. Krause, and W. Messer Unique organization of the dnaA region from Prochlorococcus marinus CCMP1375, a marine cyanobacterium Mol. Gen. Genet. 257 1998 534 541
    • (1998) Mol. Gen. Genet. , vol.257 , pp. 534-541
    • Richter, S.1    Hess, W.R.2    Krause, M.3    Messer, W.4
  • 32
    • 0031555485 scopus 로고    scopus 로고
    • Complexes at the replication origin of Bacillus subtilis with homologous and heterologous DnaA protein
    • M. Krause, B. Ruckert, R. Lurz, and W. Messer Complexes at the replication origin of Bacillus subtilis with homologous and heterologous DnaA protein J. Mol. Biol. 274 1997 365 380
    • (1997) J. Mol. Biol. , vol.274 , pp. 365-380
    • Krause, M.1    Ruckert, B.2    Lurz, R.3    Messer, W.4
  • 34
    • 0026322679 scopus 로고
    • Initiator (DnaA) protein concentration as a function of growth rate in Escherichia coli and Salmonella typhimurium
    • F.G. Hansen, T. Atlung, R.E. Braun, A. Wright, P. Hughes, and M. Kohiyama Initiator (DnaA) protein concentration as a function of growth rate in Escherichia coli and Salmonella typhimurium J. Bacteriol. 173 1991 5194 5199
    • (1991) J. Bacteriol. , vol.173 , pp. 5194-5199
    • Hansen, F.G.1    Atlung, T.2    Braun, R.E.3    Wright, A.4    Hughes, P.5    Kohiyama, M.6
  • 35
    • 0021678736 scopus 로고
    • Electroblotting of multiple gels: A simple apparatus without buffer tank for rapid transfer of proteins from polyacrylamide to nitrocellulose
    • J. Kyhse-Andersen Electroblotting of multiple gels: a simple apparatus without buffer tank for rapid transfer of proteins from polyacrylamide to nitrocellulose J. Biochem. Biophys. Methods 10 1984 203 209
    • (1984) J. Biochem. Biophys. Methods , vol.10 , pp. 203-209
    • Kyhse-Andersen, J.1
  • 36
    • 0024651880 scopus 로고
    • Dam methylation and the initiation of DNA replication on oriC plasmids
    • A. Landoulsi, P. Hughes, R. Kern, and M. Kohiyama dam methylation and the initiation of DNA replication on oriC plasmids Mol. Gen. Genet. 216 1989 217 223
    • (1989) Mol. Gen. Genet. , vol.216 , pp. 217-223
    • Landoulsi, A.1    Hughes, P.2    Kern, R.3    Kohiyama, M.4
  • 37
    • 0021321955 scopus 로고
    • A rapid, sensitive method for detection of alkaline-phosphatase conjugated anti-antibody on Western blots
    • M.S. Blake, K.H. Johnston, G.J. Russelljones, and E.C. Gotschlich A rapid, sensitive method for detection of alkaline-phosphatase conjugated anti-antibody on Western blots Anal. Biochem. 136 1984 175 179
    • (1984) Anal. Biochem. , vol.136 , pp. 175-179
    • Blake, M.S.1    Johnston, K.H.2    Russelljones, G.J.3    Gotschlich, E.C.4
  • 38
    • 0002657642 scopus 로고
    • DNA replication and the division cycle in Escherichia coli
    • D.J. Clark, and O. Maaløe DNA replication and the division cycle in Escherichia coli J. Mol. Biol. 23 1967 99 112
    • (1967) J. Mol. Biol. , vol.23 , pp. 99-112
    • Clark, D.J.1    Maaløe, O.2
  • 39
    • 0028300741 scopus 로고
    • Combining evolutionary information and neural networks to predict protein secondary structure
    • B. Rost, and C. Sander Combining evolutionary information and neural networks to predict protein secondary structure Proteins: Struct. Funct. Genet. 19 1994 55 72
    • (1994) Proteins: Struct. Funct. Genet. , vol.19 , pp. 55-72
    • Rost, B.1    Sander, C.2
  • 40
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • N. Guex, and M.C. Peitsch SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling Electrophoresis 18 1997 2714 2723
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 41
    • 0026682657 scopus 로고
    • Transcription factors - Structural families and principles of DNA recognition
    • C.O. Pabo, and R.T. Sauer Transcription factors - structural families and principles of DNA recognition Annu. Rev. Biochem. 61 1992 1053 1095
    • (1992) Annu. Rev. Biochem. , vol.61 , pp. 1053-1095
    • Pabo, C.O.1    Sauer, R.T.2
  • 42
    • 0343534159 scopus 로고
    • The amino-terminal domain of LexA repressor is alpha-helical but differs from canonical helix-turn-helix proteins - A two-dimensional H-1-NMR study
    • R.M.J.N. Lamerichs, A. Padilla, R. Boelens, R. Kaptein, G. Ottleben, and H. Ruterjans The amino-terminal domain of LexA repressor is alpha-helical but differs from canonical helix-turn-helix proteins - a two-dimensional H-1-NMR study Proc. Natl Acad. Sci. USA 86 1989 6863 6867
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 6863-6867
    • Lamerichs, R.M.J.N.1    Padilla, A.2    Boelens, R.3    Kaptein, R.4    Ottleben, G.5    Ruterjans, H.6
  • 43
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
    • J.H. Miller Experiments in Molecular Genetics 1972 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
    • (1972) Experiments in Molecular Genetics
    • Miller, J.H.1
  • 44
    • 0018956590 scopus 로고
    • Analysis of gene control signals by DNA fusion and cloning in Escherichia coli
    • M.J. Casadaban, and S. Cohen Analysis of gene control signals by DNA fusion and cloning in Escherichia coli J. Mol. Biol. 138 1980 179 207
    • (1980) J. Mol. Biol. , vol.138 , pp. 179-207
    • Casadaban, M.J.1    Cohen, S.2
  • 45
    • 0024603187 scopus 로고
    • Isolation, characterization, and nucleotide sequence of appY, a regulatory gene for growth-phase-dependent gene expression in Escherichia coli
    • T. Atlung, A. Nielsen, and F.G. Hansen Isolation, characterization, and nucleotide sequence of appY, a regulatory gene for growth-phase-dependent gene expression in Escherichia coli J. Bacteriol. 171 1989 1683 1691
    • (1989) J. Bacteriol. , vol.171 , pp. 1683-1691
    • Atlung, T.1    Nielsen, A.2    Hansen, F.G.3
  • 46
    • 0036227706 scopus 로고    scopus 로고
    • Genetic organization of the Vibrio harveyi DnaA gene region and analysis of the function of the V. harveyi DnaA protein in Escherichia coli
    • D. Berenstein, K. Olesen, C. Speck, and O. Skovgaard Genetic organization of the Vibrio harveyi DnaA gene region and analysis of the function of the V. harveyi DnaA protein in Escherichia coli J. Bacteriol. 184 2002 2533 2538
    • (2002) J. Bacteriol. , vol.184 , pp. 2533-2538
    • Berenstein, D.1    Olesen, K.2    Speck, C.3    Skovgaard, O.4
  • 47
    • 0036204574 scopus 로고    scopus 로고
    • Control analysis of the effects of H-NS on chromosome replication and the cell cycle in Escherichia coli
    • T. Atlung, and F.G. Hansen Control analysis of the effects of H-NS on chromosome replication and the cell cycle in Escherichia coli J. Bacteriol. 184 2002 1843 1850
    • (2002) J. Bacteriol. , vol.184 , pp. 1843-1850
    • Atlung, T.1    Hansen, F.G.2
  • 48
    • 0028918936 scopus 로고
    • Reversibility of DnaA protein activity in the "irreversibel" dnaA204 mutant of Escherichia coli
    • F.G. Hansen, and T. Atlung Reversibility of DnaA protein activity in the "irreversibel" dnaA204 mutant of Escherichia coli Mol. Microbiol. 15 1995 141 148
    • (1995) Mol. Microbiol. , vol.15 , pp. 141-148
    • Hansen, F.G.1    Atlung, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.