Re-evaluation and in Silico Annotation of the Tupaia Herpesvirus Proteins

Virus Genes

Volumn 28, Issue 1, 2004, Pages 99-120

  Bahr, Udo ^a   Darai, Gholamreza ^a  

^a UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

Genome; Herpesviridae; Pattern based protein annotation; THV; Tree shrew; Tupaia herpesvirus

Indexed keywords

VIRUS PROTEIN;

ARTICLE; EXPRESSION VECTOR; GENE INSERTION SEQUENCE; HERPES VIRUS; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NUCLEOTIDE SEQUENCE; PATHOGENESIS; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN FUNCTION; SCANDENTIA; VIRUS CELL INTERACTION; VIRUS GENOME;

ANIMALS; COMPUTATIONAL BIOLOGY; HERPESVIRIDAE; OPEN READING FRAMES; PHYLOGENY; SEQUENCE ANALYSIS, DNA; TUPAIA; VIRAL PROTEINS;

ANIMALIA; CHIMPANZEE CYTOMEGALOVIRUS; DNA VIRUSES; HERPES; HERPESVIRIDAE; HUMAN HERPESVIRUS 5; PAN TROGLODYTES; SCANDENTIA; THEILOVIRUS; TUPAIA; TUPAIA GLIS; TUPAIA HERPESVIRUS;

EID: 0742286765     PISSN: 09208569     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:VIRU.0000012267.97659.e0     Document Type: Article

References (56)

1. Weir J.P., Virus Genes 16, 85-93, 1998.
2. Bahr U., and Darai G., J Virol 75, 4854-4870, 2001.
3. Davison A.J., Vet Microbiol 86, 69-88, 2002.
4. Karlin S., Mocarski E.S., and Schachtel, G.A., J Virol 68, 1886-1902, 1994.
5. McGeoch D.J., Ann Rev Microbiol 43, 235-265, 1989.
6. McGeoch D.J., and Cook S., J Mol Biol 238, 9-22, 1994.
7. McGeoch D.J., Cook S., Dolan A., Jamieson F.E., and Telford E.A., J Mol Biol 247, 443-458, 1995.
8. Vossen M.T., Westerhout E.M., Soderberg-Naucler C., and Wiertz E.J., Immunogenetics 54, 527-542, 2002.
9. Darai G., Matz B., Flügel R.M., Berger U., Munk K., and Gelderblom H., J Gen Virol 32, 341-351, 1979.
10. Darai G., Matz B., Schroeder C.H., Flügel R.M., Berger U., Munk K., and Gelderblom H., J Gen Virol 43, 541-551, 1979.
11. McCombs R.M., Brunschwig J.P., Mircovic R., and Benyesh-Melnick M., Virology 45, 816-820, 1971.
12. Mirkovic R., Voss W.R., and Beyesh-Melnick M., in Proceedings of the 10th International Congress of microbiology. Mexico City, 1970, pp. 181-189.
13. Bartolomucci A., de Biurrun G., Czeh B., van Kampen M., and Fuchs E., Eur J Neurosci 15, 1863-1866, 2002.
14. Czeh B., Michaelis T., Watanabe T., Frahm J., de Biurrun G., van Kampen M., Bartolomucci A., and Fuchs E., Proc Natl Acad Sci USA 98, 12796-12801, 2001.
15. Fuchs E., Flugge G., Ohl F., Lucassen P., Vollmann-Honsdorf G.K., and Michaelis T., Physiol Behav 73, 285-291, 2001.
16. Lucassen P.J., Vollmann-Honsdorf G.K., Gleisberg M., Czeh B., De Kloet E.R., and Fuchs E., Eur J Neurosci 14, 161-166, 2001.
17. Meyer U., van Kampen M., Isovich E., Flugge G., and Fuchs E., Hippocampus 11, 329-336, 2001.
18. Van Kampen M, De Kloet E.R., Flugge G., and Fuchs E., Eur J Pharmacol 457, 207-216, 2002.
19. Bosking W.H., Crowley J.C., and Fitzpatrick D., Nat Neurosci 5, 874-882, 2002.
20. Suss M., Washausen S., Kuhn H.J., and Knabe W., J Neurosci Meth 113, 147-158, 2002.
21. Kock J., Nassal M., MacNelly S., Baumert T.F., Blum H.E., and von Weizsacker F., J Virol 75, 5084-5089, 2001.
22. Park U.S., Su J.J., Ban K.C., Qin L., Lee E.H., and Lee Y.I., Gene 251, 73-80, 2000.
23. Zhao X., Tang Z.Y., Klumpp B., Wolff-Vorbeck G., Barth H., Levy S., von Weizsacker F., Blum H.E., and Baumert T.F., J Clin Invest 109, 221-232, 2002.
24. Flugge P., Fuchs E., Gunther E., and Walter L., Immunogenetics 53, 984-988, 2002.
25. Nishihara H., Terai Y., and Okada N., Mol Biol Evol 19, 1964-1972, 2002.
26. Schmitz J., Ohme M., and Zischler H., Mol Biol Evol 17, 1334-1343, 2000.
27. Darai G., Zöller L., Matz B., Flügel R.M., Hofmann W., and Gelderblom H., in Lapin B., and Yohn S. (eds), Advances in Leucaemia Research. USSR Acad Med Sci, Moskau, 1980, pp. 141-148.
28. Darai G., Flügel R.M., Matz B., and Delius H., in Becker Y. (ed.), Herpesvirus DNA. Martinus Nijhoff, The Hague, The Netherlands, 1981, pp. 345-361.
29. Darai G., Koch H.G., Flügel R.M., and Gelderblom H., in Bonneau M., and Hennessen W. (eds), Herpesvirus of Man and Animal. Developments in Biological Standardization. Basel, Switzerland, 1983, pp. 39-51.
30. Darai G., and Koch H.G., in Wittmann G., Gaskell R.M., and Rziha R.J. (eds), Latent Herpesvirus Infections in Veterinary Medicine. Martinus Nijhoff, The Hague, The Netherlands, 1984, pp. 91-102.
31. Koch H.G., Delius H., Matz B., Flügel R.M., Clarke J., and Darai G., J Virol 55, 86-95, 1985.
32. Albrecht M., Darai G., and Flugel R.M., J Virol 56, 466-474, 1985.
33. Springfeld C., Tidona C.A., Kehm R., Bahr U., and Darai G., J Gen Virol 79, 3049-3053, 1998.
34. Tidona C.A., and Darai G. (eds), The Springer Index of Viruses. Springer-Verlag, Berlin Heidelberg New York, 2002.
35. Van Regenmortel M.H.V., Fauquet C.M., Bishop D.H.L., Carstens E.B., Estes M.K., Lemon S.M., Maniloff J., Mayo M.A., McGeoch D.J., Pringle C.R., and Wickner R.B., Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego San Francisco New York Boston London Sydney Tokyo, 2000.
36. Davison A.J., Dolan A., Akter P., Addison C., Dargan D.J., Alcendor D.J., McGeoch D.J., and Hayward G.S., J Gen Virol 84, 17-28, 2003.
37. Floratos A., Rigoutsos I., Parida L., Stolovitzky G., and Gao Y., in Proceedings of the Third Annual ACM International Conference on Computational Molecular Biology (RECOMB '99). ACM, Lyon, France, 1999, pp. 164-173.
38. Novotny J., Rigoutsos I., Coleman D., and Shenk T., J Mol Biol 310, 1151-1166, 2001.
39. Parida L., Floratos A., and Rigoutsos I, J Comb Optim 3, 247-275, 1999.
40. Rigoutsos I., and Floratos A., Bioinformatics 14, 55-67, 1998.
41. Rigoutsos I., Gao Y., Floratos A., and Parida L., in Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology (ISMB '99). AAAI Press, Heidelberg, Germany, 1999, pp. 223-233.
42. Rigoutsos I., Floratos A., Ouzounis C., Gao Y., and Parida L., Proteins 37, 264-277, 1999.
43. Rigoutsos I., Floratos A., Parida L., Gao Y., and Platt D., Metab Eng 2, 159-177, 2000.
44. Rigoutsos I., Huynh T., Floratos A., Parida L., and Platt D., Nucleic Acids Res 30, 3901-3916, 2002.
45. Rigoutsos I., Novotny J., Huynh T., Chin-Bow S.T., Parida L., Platt D., Coleman D., and Shenk T., J Virol 77, 4326-4344, 2003.
46. Koonin E.V., Wolf Y.I., and Karev G.P., Nature 420, 218-223, 2002.
47. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J., J Mol Biol 215, 403-410, 1990.
48. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J., Nucleic Acids Res 25, 3389-3402, 1997.
49. Higgins D.G., and Sharp P.M., Gene 73, 237-244, 1988.
50. Bucher P., and Bairoch A., in Altman R., Brutlag D., Karp P., Lathrop R., and Searls D. (eds), ISMB-94, Proceedings 2nd International Conference on Intelligent Systems for Molecular Biology. AAAIPress, Menlo Park, 1994, pp. 53-61.
51. Falquet L., Pagni M., Bucher P., Hulo N., Sigrist C.J., Hofmann K., and Bairoch A., Nucleic Acids Res 30, 235-238, 2002.
52. Hofmann K., Bucher P., Falquet L., and Bairoch A., Nucleic Acids Res 27, 215-219, 1999.
53. Sigrist C.J., Cerutti L., Hulo N., Gattiker A., Falquet L., Pagni M., Bairoch A., and Bucher P., Brief Bioinform 3, 265-274, 2002.
54. Larsen F., Gundersen G., Lopez R., and Prydz H., Genomics 13, 1095-1107, 1992.
55. Wagner M., Ruzsics Z., and Koszinowski U.K., Trends Microbiol 10, 318-324, 2002.
56. Davison A.J., Dargan D.J., and Stow N.D., Antiviral Res 56, 1-11, 2002.