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Volumn 3, Issue , 2002, Pages

CoreGenes: A computational tool for identifying and cataloging "core" genes in a set of small genomes

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CHLOROPLAST; COMPUTER INTERFACE; COMPUTER PROGRAM; CONTROLLED STUDY; DNA SEQUENCE; GENE IDENTIFICATION; GENOME ANALYSIS; MEDICAL TECHNOLOGY; MITOCHONDRION; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE; BIOLOGY; COMPARATIVE STUDY; COMPUTER LANGUAGE; ESSENTIAL GENE; GENE; GENETIC DATABASE; GENETICS; GENOME; GENOMICS; INTERNET; METHODOLOGY; VIRUS GENE; VIRUS GENOME;

EID: 0642342573     PISSN: 14712105     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2105-3-12     Document Type: Article
Times cited : (116)

References (31)
  • 2
    • 33749192663 scopus 로고    scopus 로고
    • Graphical tools for comparative genome analysis
    • Dicks J: Graphical tools for comparative genome analysis Yeast 2000, 17:6-15
    • (2000) Yeast , vol.17 , pp. 6-15
    • Dicks, J.1
  • 3
    • 0033765762 scopus 로고    scopus 로고
    • Viral genome organizer: A system for analyzing complete viral genomes
    • Upton C, Hogg D, Perrin D, Boone M, Harris NL: Viral genome organizer: a system for analyzing complete viral genomes Virus Res 2000, 70:55-64
    • (2000) Virus Res. , vol.70 , pp. 55-64
    • Upton, C.1    Hogg, D.2    Perrin, D.3    Boone, M.4    Harris, N.L.5
  • 5
    • 0033828267 scopus 로고    scopus 로고
    • Alfresco - A workbench for comparative genomic sequence analysis
    • Jareborg N, Durbin R: Alfresco - a workbench for comparative genomic sequence analysis Genome Res 2000, 10:1148-1157
    • (2000) Genome Res. , vol.10 , pp. 1148-1157
    • Jareborg, N.1    Durbin, R.2
  • 6
    • 0642281385 scopus 로고    scopus 로고
    • FOUNTAIN: A JAVA open-source package to assist large sequencing projects
    • Buerstedde J-M, Prill F: FOUNTAIN: A JAVA open-source package to assist large sequencing projects BMC Bioinformatics 2001, 2:6
    • (2001) BMC Bioinformatics , vol.2 , pp. 6
    • Buerstedde, J.-M.1    Prill, F.2
  • 7
    • 0035098916 scopus 로고    scopus 로고
    • GeneOrder: Comparing the order of genes in small genomes
    • Mazumder R, Kolaskar A, Seto D: GeneOrder: comparing the order of genes in small genomes Bioinformatics 2001, 17:162-166
    • (2001) Bioinformatics , vol.17 , pp. 162-166
    • Mazumder, R.1    Kolaskar, A.2    Seto, D.3
  • 8
    • 0035424580 scopus 로고    scopus 로고
    • Comparisons of gene co-linearity in genomes using GeneOrder2.0
    • Zafar N, Mazumder R, Seto D: Comparisons of gene co-linearity in genomes using GeneOrder2.0 Trends in Biochem Sci 2001, 26:514-516
    • (2001) Trends in Biochem. Sci. , vol.26 , pp. 514-516
    • Zafar, N.1    Mazumder, R.2    Seto, D.3
  • 9
    • 2942541320 scopus 로고    scopus 로고
    • Software review: GCG Wisconsin package 10.1
    • Mar 30
    • Ray WC: Software review: GCG Wisconsin package 10.1 in HMS Beagle: The BioMedNet Magazine 2001, 99:2001 Mar 30 [http://news.bmn.com/hmsbeagle/99/reviews/sreview]
    • (2001) HMS Beagle: The BioMedNet Magazine 2001 , vol.99
    • Ray, W.C.1
  • 11
    • 0035011227 scopus 로고    scopus 로고
    • Comparison of genomic DNA sequences: Solved and unsolved problems
    • Miller W: Comparison of genomic DNA sequences: solved and unsolved problems Bioinformatics 2001, 17:391-397
    • (2001) Bioinformatics , vol.17 , pp. 391-397
    • Miller, W.1
  • 12
    • 0028806782 scopus 로고
    • Genome sequence comparison and scenarios for gene rearrangements: A test case
    • Hannenhalli S, Chappey C, Koonin EV, Pevzner PA: Genome sequence comparison and scenarios for gene rearrangements: a test case Genomics 1995, 30:299-311
    • (1995) Genomics , vol.30 , pp. 299-311
    • Hannenhalli, S.1    Chappey, C.2    Koonin, E.V.3    Pevzner, P.A.4
  • 14
    • 0034329429 scopus 로고    scopus 로고
    • Genome sequence comparisons: Hurdles in the fast lane to functional genomics
    • Wiehe T, Guigo R, Miller W: Genome sequence comparisons: hurdles in the fast lane to functional genomics Brief Bioinform 2000, 1:381-388
    • (2000) Brief Bioinform. , vol.1 , pp. 381-388
    • Wiehe, T.1    Guigo, R.2    Miller, W.3
  • 15
    • 0031769998 scopus 로고    scopus 로고
    • Big trees from little genomes: Mitochondrial gene order as a phylogenetic tool
    • Boore JL, Brown WM: Big trees from little genomes: mitochondrial gene order as a phylogenetic tool Curr Opin Genet Dev 1998, 8:668-674
    • (1998) Curr. Opin. Genet. Dev. , vol.8 , pp. 668-674
    • Boore, J.L.1    Brown, W.M.2
  • 16
    • 0033166097 scopus 로고    scopus 로고
    • A comparative genomics approach to the evolution of eukaryotes and their mitochondria
    • Lang BF, Seif E, Gray MW, O'Kelly CJ, Burger G: A comparative genomics approach to the evolution of eukaryotes and their mitochondria J Eukaryot Microbiol 1999, 46:320-326
    • (1999) J. Eukaryot. Microbiol. , vol.46 , pp. 320-326
    • Lang, B.F.1    Seif, E.2    Gray, M.W.3    O'Kelly, C.J.4    Burger, G.5
  • 17
    • 0033621040 scopus 로고    scopus 로고
    • The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes
    • Turmel M, Otis C, Lemieux C: The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes Proc Natl Acad Sci, USA 1999, 96:10248-10253
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 10248-10253
    • Turmel, M.1    Otis, C.2    Lemieux, C.3
  • 18
    • 0033384634 scopus 로고    scopus 로고
    • An automated comparative analysis of 17 complete microbial genomes
    • Bansal AK: An automated comparative analysis of 17 complete microbial genomes Bioinformatics 1999, 15:900-908
    • (1999) Bioinformatics , vol.15 , pp. 900-908
    • Bansal, A.K.1
  • 20
    • 0030722935 scopus 로고    scopus 로고
    • Long human-mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome
    • Hardison RC, Oeltjen J, Miller W: Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome Genome Res 1997, 7:959-966
    • (1997) Genome Res. , vol.7 , pp. 959-966
    • Hardison, R.C.1    Oeltjen, J.2    Miller, W.3
  • 21
    • 0027963488 scopus 로고
    • Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA
    • Koop BF, Hood L: Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA Nat Genet 1994, 7:48-53
    • (1994) Nat. Genet. , vol.7 , pp. 48-53
    • Koop, B.F.1    Hood, L.2
  • 24
    • 0032579778 scopus 로고    scopus 로고
    • Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi
    • Keogh RS, Seoighe C, Wolfe KH: Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi Yeast 1998, 14:443-457
    • (1998) Yeast , vol.14 , pp. 443-457
    • Keogh, R.S.1    Seoighe, C.2    Wolfe, K.H.3
  • 25
    • 0034213530 scopus 로고    scopus 로고
    • Colinearity and gene density in grass genomes
    • Keller B, Feuillet C: Colinearity and gene density in grass genomes Trends Plant Sci 2000, 5:246-251
    • (2000) Trends Plant. Sci. , vol.5 , pp. 246-251
    • Keller, B.1    Feuillet, C.2
  • 26
    • 0032813927 scopus 로고    scopus 로고
    • Extensive gene order differences within regions of conserved synteny between the Fugu and human genomes: Implications for chromosomal evolution and the cloning of disease genes
    • Gilley J, Fried M: Extensive gene order differences within regions of conserved synteny between the Fugu and human genomes: implications for chromosomal evolution and the cloning of disease genes Hum Mol Genet 1999, 8:1313-1320
    • (1999) Hum. Mol. Genet. , vol.8 , pp. 1313-1320
    • Gilley, J.1    Fried, M.2
  • 27
    • 0034255126 scopus 로고    scopus 로고
    • Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny
    • Ku HM, Vision T, Liu J, Tanksley SD: Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny Proc Natl Acad Sci, USA 2000, 97:9121-9126
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 9121-9126
    • Ku, H.M.1    Vision, T.2    Liu, J.3    Tanksley, S.D.4
  • 28
    • 0002119228 scopus 로고    scopus 로고
    • Estimation of synteny conservation and genome compaction between puffer fish [Fugu] and human
    • McLysaght A, Enright AJ, Skrabanek L, Wolfe KH: Estimation of synteny conservation and genome compaction between puffer fish [Fugu] and human Yeast 2000, 17:22-36
    • (2000) Yeast , vol.17 , pp. 22-36
    • McLysaght, A.1    Enright, A.J.2    Skrabanek, L.3    Wolfe, K.H.4
  • 30
    • 0034992826 scopus 로고    scopus 로고
    • The closest BLAST hit is often not the nearest neighbor
    • Koski LB, Golding BG: The closest BLAST hit is often not the nearest neighbor J. Mol. Evol. 2001, 52:540-542
    • (2001) J. Mol. Evol. , vol.52 , pp. 540-542
    • Koski, L.B.1    Golding, B.G.2
  • 31
    • 0025272240 scopus 로고
    • Rapid and sensitive sequence comparison with FASTP and FASTA
    • Pearson WR: Rapid and sensitive sequence comparison with FASTP and FASTA Meth. Enzymol 1990, 183:63-98
    • (1990) Meth. Enzymol. , vol.183 , pp. 63-98
    • Pearson, W.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.