-
1
-
-
0031955274
-
JAVA-based tools for genomic data visualization
-
Helt GA, Lewis S, Loraine AE, Rubin GM: JAVA-based tools for genomic data visualization Genome Res 1998, 8:291-305
-
(1998)
Genome Res.
, vol.8
, pp. 291-305
-
-
Helt, G.A.1
Lewis, S.2
Loraine, A.E.3
Rubin, G.M.4
-
2
-
-
33749192663
-
Graphical tools for comparative genome analysis
-
Dicks J: Graphical tools for comparative genome analysis Yeast 2000, 17:6-15
-
(2000)
Yeast
, vol.17
, pp. 6-15
-
-
Dicks, J.1
-
3
-
-
0033765762
-
Viral genome organizer: A system for analyzing complete viral genomes
-
Upton C, Hogg D, Perrin D, Boone M, Harris NL: Viral genome organizer: a system for analyzing complete viral genomes Virus Res 2000, 70:55-64
-
(2000)
Virus Res.
, vol.70
, pp. 55-64
-
-
Upton, C.1
Hogg, D.2
Perrin, D.3
Boone, M.4
Harris, N.L.5
-
4
-
-
0032491377
-
Predicting function: From genes to genomes and back
-
Bork P, Dandekar T, Diaz-Lazcoz Y, Eisenhaber F, Huynen M, Yuan Y: Predicting function: from genes to genomes and back J Mol Biol 1998, 283:707-725
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 707-725
-
-
Bork, P.1
Dandekar, T.2
Diaz-Lazcoz, Y.3
Eisenhaber, F.4
Huynen, M.5
Yuan, Y.6
-
5
-
-
0033828267
-
Alfresco - A workbench for comparative genomic sequence analysis
-
Jareborg N, Durbin R: Alfresco - a workbench for comparative genomic sequence analysis Genome Res 2000, 10:1148-1157
-
(2000)
Genome Res.
, vol.10
, pp. 1148-1157
-
-
Jareborg, N.1
Durbin, R.2
-
6
-
-
0642281385
-
FOUNTAIN: A JAVA open-source package to assist large sequencing projects
-
Buerstedde J-M, Prill F: FOUNTAIN: A JAVA open-source package to assist large sequencing projects BMC Bioinformatics 2001, 2:6
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 6
-
-
Buerstedde, J.-M.1
Prill, F.2
-
7
-
-
0035098916
-
GeneOrder: Comparing the order of genes in small genomes
-
Mazumder R, Kolaskar A, Seto D: GeneOrder: comparing the order of genes in small genomes Bioinformatics 2001, 17:162-166
-
(2001)
Bioinformatics
, vol.17
, pp. 162-166
-
-
Mazumder, R.1
Kolaskar, A.2
Seto, D.3
-
8
-
-
0035424580
-
Comparisons of gene co-linearity in genomes using GeneOrder2.0
-
Zafar N, Mazumder R, Seto D: Comparisons of gene co-linearity in genomes using GeneOrder2.0 Trends in Biochem Sci 2001, 26:514-516
-
(2001)
Trends in Biochem. Sci.
, vol.26
, pp. 514-516
-
-
Zafar, N.1
Mazumder, R.2
Seto, D.3
-
9
-
-
2942541320
-
Software review: GCG Wisconsin package 10.1
-
Mar 30
-
Ray WC: Software review: GCG Wisconsin package 10.1 in HMS Beagle: The BioMedNet Magazine 2001, 99:2001 Mar 30 [http://news.bmn.com/hmsbeagle/99/reviews/sreview]
-
(2001)
HMS Beagle: The BioMedNet Magazine 2001
, vol.99
-
-
Ray, W.C.1
-
11
-
-
0035011227
-
Comparison of genomic DNA sequences: Solved and unsolved problems
-
Miller W: Comparison of genomic DNA sequences: solved and unsolved problems Bioinformatics 2001, 17:391-397
-
(2001)
Bioinformatics
, vol.17
, pp. 391-397
-
-
Miller, W.1
-
12
-
-
0028806782
-
Genome sequence comparison and scenarios for gene rearrangements: A test case
-
Hannenhalli S, Chappey C, Koonin EV, Pevzner PA: Genome sequence comparison and scenarios for gene rearrangements: a test case Genomics 1995, 30:299-311
-
(1995)
Genomics
, vol.30
, pp. 299-311
-
-
Hannenhalli, S.1
Chappey, C.2
Koonin, E.V.3
Pevzner, P.A.4
-
13
-
-
0033799618
-
Active conservation of noncoding sequences revealed by three-way species comparisons
-
Dubchak I, Brudno M, Loots GG, Pachter L, Mayor C, Rubin EM, Frazer KA: Active conservation of noncoding sequences revealed by three-way species comparisons Genome Res 2000, 10:1304-1306
-
(2000)
Genome Res.
, vol.10
, pp. 1304-1306
-
-
Dubchak, I.1
Brudno, M.2
Loots, G.G.3
Pachter, L.4
Mayor, C.5
Rubin, E.M.6
Frazer, K.A.7
-
14
-
-
0034329429
-
Genome sequence comparisons: Hurdles in the fast lane to functional genomics
-
Wiehe T, Guigo R, Miller W: Genome sequence comparisons: hurdles in the fast lane to functional genomics Brief Bioinform 2000, 1:381-388
-
(2000)
Brief Bioinform.
, vol.1
, pp. 381-388
-
-
Wiehe, T.1
Guigo, R.2
Miller, W.3
-
15
-
-
0031769998
-
Big trees from little genomes: Mitochondrial gene order as a phylogenetic tool
-
Boore JL, Brown WM: Big trees from little genomes: mitochondrial gene order as a phylogenetic tool Curr Opin Genet Dev 1998, 8:668-674
-
(1998)
Curr. Opin. Genet. Dev.
, vol.8
, pp. 668-674
-
-
Boore, J.L.1
Brown, W.M.2
-
16
-
-
0033166097
-
A comparative genomics approach to the evolution of eukaryotes and their mitochondria
-
Lang BF, Seif E, Gray MW, O'Kelly CJ, Burger G: A comparative genomics approach to the evolution of eukaryotes and their mitochondria J Eukaryot Microbiol 1999, 46:320-326
-
(1999)
J. Eukaryot. Microbiol.
, vol.46
, pp. 320-326
-
-
Lang, B.F.1
Seif, E.2
Gray, M.W.3
O'Kelly, C.J.4
Burger, G.5
-
17
-
-
0033621040
-
The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes
-
Turmel M, Otis C, Lemieux C: The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes Proc Natl Acad Sci, USA 1999, 96:10248-10253
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10248-10253
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
18
-
-
0033384634
-
An automated comparative analysis of 17 complete microbial genomes
-
Bansal AK: An automated comparative analysis of 17 complete microbial genomes Bioinformatics 1999, 15:900-908
-
(1999)
Bioinformatics
, vol.15
, pp. 900-908
-
-
Bansal, A.K.1
-
19
-
-
0034659939
-
Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA
-
Shira M, Hirakawa H, Kimoto M, Tabuchi M, Kishi F, Ouchi K, Shiba T, Ishii K, Hattori M, Kuhara S, Nakazawa T: Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA Nucleic Acids Res 2000, 28:2311-2314
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 2311-2314
-
-
Shira, M.1
Hirakawa, H.2
Kimoto, M.3
Tabuchi, M.4
Kishi, F.5
Ouchi, K.6
Shiba, T.7
Ishii, K.8
Hattori, M.9
Kuhara, S.10
Nakazawa, T.11
-
20
-
-
0030722935
-
Long human-mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome
-
Hardison RC, Oeltjen J, Miller W: Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome Genome Res 1997, 7:959-966
-
(1997)
Genome Res.
, vol.7
, pp. 959-966
-
-
Hardison, R.C.1
Oeltjen, J.2
Miller, W.3
-
21
-
-
0027963488
-
Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA
-
Koop BF, Hood L: Striking sequence similarity over almost 100 kilobases of human and mouse T-cell receptor DNA Nat Genet 1994, 7:48-53
-
(1994)
Nat. Genet.
, vol.7
, pp. 48-53
-
-
Koop, B.F.1
Hood, L.2
-
22
-
-
0034807024
-
Comparative genomics of the human and mouse T cell receptor loci
-
Glusman G, Rowen L, Lee I, Boysen C, Roach JC, Smit AF, Wang K, Koop BF, Hood L: Comparative genomics of the human and mouse T cell receptor loci Immunity 2001, 15:337-349
-
(2001)
Immunity
, vol.15
, pp. 337-349
-
-
Glusman, G.1
Rowen, L.2
Lee, I.3
Boysen, C.4
Roach, J.C.5
Smit, A.F.6
Wang, K.7
Koop, B.F.8
Hood, L.9
-
23
-
-
17944365053
-
Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: A search for candidate genes at or near the human chromosome 22 pericentromere
-
Footz TK, Brinkman-Mills P, Banting GS, Maier SA, Riazi MA, Bridgland L, Hu S, Birren B, Minoshima S, Shimizu N, Pan H, Nguyen T, Fang F, Fu Y, Ray L, Wu H, Shaull S, Phan S, Yao Z, Chen F, Huan A, Hu P, Wang Q, Loh P, Qi S, Roe BA, McDermid HE: Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere Genome Res 2001, 11:1053-1070
-
(2001)
Genome Res.
, vol.11
, pp. 1053-1070
-
-
Footz, T.K.1
Brinkman-Mills, P.2
Banting, G.S.3
Maier, S.A.4
Riazi, M.A.5
Bridgland, L.6
Hu, S.7
Birren, B.8
Minoshima, S.9
Shimizu, N.10
Pan, H.11
Nguyen, T.12
Fang, F.13
Fu, Y.14
Ray, L.15
Wu, H.16
Shaull, S.17
Phan, S.18
Yao, Z.19
Chen, F.20
Huan, A.21
Hu, P.22
Wang, Q.23
Loh, P.24
Qi, S.25
Roe, B.A.26
McDermid, H.E.27
more..
-
24
-
-
0032579778
-
Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi
-
Keogh RS, Seoighe C, Wolfe KH: Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi Yeast 1998, 14:443-457
-
(1998)
Yeast
, vol.14
, pp. 443-457
-
-
Keogh, R.S.1
Seoighe, C.2
Wolfe, K.H.3
-
25
-
-
0034213530
-
Colinearity and gene density in grass genomes
-
Keller B, Feuillet C: Colinearity and gene density in grass genomes Trends Plant Sci 2000, 5:246-251
-
(2000)
Trends Plant. Sci.
, vol.5
, pp. 246-251
-
-
Keller, B.1
Feuillet, C.2
-
26
-
-
0032813927
-
Extensive gene order differences within regions of conserved synteny between the Fugu and human genomes: Implications for chromosomal evolution and the cloning of disease genes
-
Gilley J, Fried M: Extensive gene order differences within regions of conserved synteny between the Fugu and human genomes: implications for chromosomal evolution and the cloning of disease genes Hum Mol Genet 1999, 8:1313-1320
-
(1999)
Hum. Mol. Genet.
, vol.8
, pp. 1313-1320
-
-
Gilley, J.1
Fried, M.2
-
27
-
-
0034255126
-
Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny
-
Ku HM, Vision T, Liu J, Tanksley SD: Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny Proc Natl Acad Sci, USA 2000, 97:9121-9126
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9121-9126
-
-
Ku, H.M.1
Vision, T.2
Liu, J.3
Tanksley, S.D.4
-
28
-
-
0002119228
-
Estimation of synteny conservation and genome compaction between puffer fish [Fugu] and human
-
McLysaght A, Enright AJ, Skrabanek L, Wolfe KH: Estimation of synteny conservation and genome compaction between puffer fish [Fugu] and human Yeast 2000, 17:22-36
-
(2000)
Yeast
, vol.17
, pp. 22-36
-
-
McLysaght, A.1
Enright, A.J.2
Skrabanek, L.3
Wolfe, K.H.4
-
29
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool J Mol Biol 1990, 215:403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
30
-
-
0034992826
-
The closest BLAST hit is often not the nearest neighbor
-
Koski LB, Golding BG: The closest BLAST hit is often not the nearest neighbor J. Mol. Evol. 2001, 52:540-542
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 540-542
-
-
Koski, L.B.1
Golding, B.G.2
-
31
-
-
0025272240
-
Rapid and sensitive sequence comparison with FASTP and FASTA
-
Pearson WR: Rapid and sensitive sequence comparison with FASTP and FASTA Meth. Enzymol 1990, 183:63-98
-
(1990)
Meth. Enzymol.
, vol.183
, pp. 63-98
-
-
Pearson, W.R.1
|