Molecular and functional analysis of the (6-4) photolyase from the hexactinellid Aphrocallistes vastus

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1651, Issue 1-2, 2003, Pages 41-49

  Schröder, Heinz C ^a   Krasko, Anatoli ^a   Gundacker, Dietmar ^a   Leys, Sally P ^b   Müller, Isabel M ^a   Müller, Werner E G ^a  

^a JOHANNES GUTENBERG UNIVERSITY   (Germany)

^b UNIVERSITY OF VICTORIA   (Canada)

Author keywords

(6 4) photolyase; Aphrocallistes vastus; Hexactinellida; Photolyase blue light photoreceptor family; Sponges

Indexed keywords

COMPLEMENTARY DNA; DEOXYRIBODIPYRIMIDINE PHOTOLYASE; DIMER; THYMINE; PYRIMIDINE(6 4)PYRIMIDONE PHOTOLYASE; PYRIMIDINE(6-4)PYRIMIDONE PHOTOLYASE; RECOMBINANT PROTEIN;

ARTICLE; BACTERIUM MUTANT; CONTROLLED STUDY; DNA ISOLATION; ESCHERICHIA COLI; FEMALE; GENE EXPRESSION; GENE MUTATION; GENE SEQUENCE; GENETIC CODE; GENETIC TRANSFECTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHOTOACTIVATION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DNA BINDING; RECOMBINANT GENE; SEQUENCE HOMOLOGY; SPONGE (PORIFERA); ULTRAVIOLET RADIATION; AMINO ACID SEQUENCE; ANIMAL; CHEMISTRY; CLASSIFICATION; DNA DAMAGE; DNA REPAIR; ENZYMOLOGY; GENETICS; METABOLISM; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE ALIGNMENT;

ANIMALIA; APHROCALLISTES VASTUS; DEUTEROSTOMIA; ESCHERICHIA COLI; HEXACTINELLIDA; METAZOA; PORIFERA; PROTOSTOMIA;

AMINO ACID SEQUENCE; ANIMALS; DEOXYRIBODIPYRIMIDINE PHOTO-LYASE; DNA DAMAGE; DNA REPAIR; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORIFERA; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; ULTRAVIOLET RAYS;

EID: 0642341970     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1570-9639(03)00233-4     Document Type: Article

References (44)

1. Brasier M., Green O., Shields G. Ediacarian sponge spicule clusters from southwestern Mongolia and the origins of the Cambrian fauna. Geology. 25:1997;303-306.
2. Kaufman A.J., Knoll A.H., Narbonne G.M. Isotopes, ice ages, and terminal Proterozoic earth history. Proc. Natl. Acad. Sci. U. S. A. 94:1997;6600-6605.
3. Penney J.T., Racek A.A. Comprehensive Revision of a Worldwide Collection of Freshwater Sponges (Porifera: Spongillidae). 1968;Smithsonian Institution Press, Washington.
4. Brien P., Levi C., Sarà M., Tuzet O., Vacelet J. Spongiaire, Traité de Zooloqie. Grassé P.P. Anatomie, Systématique, Biologie. vol. 3:1973;Masson, Paris.
5. Müller W.E.G. How was metazoan threshold crossed: the hypothetical Urmetazoa. Comp. Biochem. Physiol., A. 129:2001;433-460.
6. Koziol C., Leys S.P., Müller I.M., Müller W.E.G. Cloning of Hsp70 genes from the marine sponges Sycon raphanus (Calcarea) and Rhabdocalyptus dawsoni (Hexactinellida). An approach to solve the phylogeny of sponges. Biol. J. Linn. Soc. 62:1997;581-592.
7. Kruse M., Leys S.P., Müller I.M., Müller W.E.G. Phylogenetic position of the Hexactinellida within the phylum Porifera based on amino acid sequence of the protein kinase C from Rhabdocalyptus dawsoni. J. Mol. Evol. 46:1998;721-728.
8. Müller W.E.G., Kruse M., Koziol C., Leys S.P. Evolution of early Metazoa: phylogenetic status of the Hexactinellida within the phylum of Porifera [sponges]. Prog. Mol. Subcell. Biol. 21:1998;141-156.
9. Schütze J., Reis Custodio M., Efremova S.M., Müller I.M., Müller W.E.G. Evolutionary relationship of Metazoa within the eukaryotes based on molecular data from Porifera. Proc. R. Soc. Lond., B. 266:1999;63-73.
10. Borchiellini C., Manuel M., Alivon E., Boury-Esnault N., Vacelet J., Le Parco Y. Sponge paraphyly and the origin of Metazoa. J. Evol. Biol. 14:2001;171-179.
11. Canfield D.E., Teske A. Late Proterozoic rise in atmospheric oxygen concentration inferred from phylogenetic and sulphur-isotope studies. Nature. 382:1996;127-132.
12. Ahmad M., Cashmore A.R. HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor. Nature. 366:1993;162-166.
13. Krasko A., Kurelec B., Batel R., Müller I.M., Müller W.E.G. The potential multidrug resistance gene POHL: an ecologically relevant indicator in marine sponges. Environ. Toxicol. Chem. 20:2001;198-204.
14. Gundacker D., Leys S.P., Schröder H.C., Müller I.M., Müller W.E.G. Isolation and cloning of a C-type lectin from the hexactinellid sponge Aphrocallistes vastus: a putative aggregation factor. Glycobiology. 11:2001;21-29.
15. Kruse M., Müller I.M., Müller W.E.G. Early evolution of metazoan serine/threonine- and tyrosine kinases: identification of selected kinases in marine sponges. Mol. Biol. Evol. 14:1997;1326-1334.
16. Wimmer W., Perovic S., Kruse M., Schröder H.C., Krasko A., Batel R., Müller W.E.G. Origin of the integrin-mediated signal transduction: functional studies with cell cultures from the sponge Suberites domuncula. Eur. J. Biochem. 178:1999;156-165.
17. Kim J.J., Sundin G.W. Construction and analysis of photolyase mutants of Pseudomonas aeruginosa and Pseudomonas syringae: contribution of photoreactivation, nucleotide excision repair, and mutagenic DNA repair to cell survival and mutability following exposure to UV-B radiation. Appl. Environ. Microbiol. 67:2001;1405-1411.
18. Hitomi K., Okamoto K., Daiyasu H., Miyashita H., Iwar S., Toh H., Ishiura M., Todo T. Bacterial cryptochrome and photolyase: characterization of two photolyase-like genes from Synechocystis sp. PCC6803. Nucleic Acids Res. 28:2000;2353-2362.
19. Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Smith J.A., Seidmann J.G., Struhl K. Current Protocols in Molecular Biology. 1995;Wiley, New York.
20. Coligan J.E., Kruisbeek A.M., Margulies D.H., Shevach E.M., Strober W. Current Protocols in Immunology. 2000;8.4.1-8.4.21 Wiley, New York.
21. Schütze J., Krasko A., Diehl-Seifert B., Müller W.E.G. Cloning and expression of the putative aggregation factor from the marine sponge Geodia cydonium. J. Cell Sci. 114:2001;3189-3198.
22. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 227:1970;680-685.
23. Kyhse-Andersen J. Electroblotting of multiple gels: a simple apparatus without buffer tank for rapid transfer of proteins from polyacrylamide to nitrocellulose. J. Biochem. Biophys. Methods. 10:1984;203-209.
24. Bachmann M., Mayet W.J., Schröder H.C., Pfeifer K., Meyer zum Büschenfelde K.-H., Müller W.E.G. Association of La and Ro antigen with intracellular structures in HEp-2 carcinoma cells. Proc. Natl. Acad. Sci. U. S. A. 83:1986;7770-7774.
25. Slagsvold H.H., Marvik O.J., Eidem G., Kristoffersen N., Paulsen R.E. Detection of high molecular weight DNA fragments characteristic of early stage apoptosis in cerebellar granule cells exposed to glutamate. Exp. Brain Res. 135:2000;173-178.
26. Wiens M., Koziol C., Hassanein H.M.A., Batel R., Schröder H.C., Müller W.E.G. Induction of gene expression of the chaperones 14-3-3 and HSP70 induced by PCB118 (2,3′,4,4′,5-pentachlorobiphenyl) in the marine sponge Geodia cydonium. Mar. Ecol., Prog. Ser. 165:1998;247-257.
27. Stanley P.E., Kricka L.J. Bioluminescence and Chemiluminescence: Current Status. 1990;Wiley, New York.
28. Isrec-Server, Distributed by INTERNET; http://www.isrec.isb-sib.ch/cgi- bin/PFSCAN_form_parser , 2001.
29. Kanai S., Kikuno R., Toh H., Ryo H., Todo T. Molecular evolution of the photolyase-blue-light photoreceptor family. J. Mol. Evol. 45:1997;535-548.
30. Blast, http://www.ncbi.nlm.nih.gov:80/cgi-bin/BLAST/nph-blast ; INTERNET, 1997.
31. Todo T., Ryo H., Yamamoto K., Toh H., Inui T., Ayaki H., Nomura T., Ikenaga M. Similarity among the Drosophila (6-4)photolyase, a human photolyase homolog, and the DNA photolyase-blue-light photoreceptor family. Science. 272:1996;109-112.
32. Kobayashi T., Ishikawa T., Hirayama J., Daiyasu H., Kanai S., Toh H., Fukuda I., Tsujimura T., Terada N., Kamei Y., Yuba S., Iwai S., Todo T. Molecular analysis of zebrafish photolyase/cryptochrome family: two types of cryptochromes present in zebrafish. Genes Cells. 5:2000;725-738.
33. Todo T., Kim S.T., Hitomi K., Otoshi E., Inui T., Morioka H., Kobayashi H., Ohtsuka E., Toh H., Ikenaga M. Flavin adeninine dinucleotide as a chromophore of the Xenopus (6-4) photolyase. Nucleic Acids Res. 25:1997;764-768.
34. PC/GENE, Data Banks CD-ROM; Release 14.0. IntelliGenetics, Mountain View, CA, 1995.
35. Somers D.E., Devlin P.F., Kay S.A. Phytochromes and crytochromes in the entrainment of Arabidopsis circadian clock. Science. 282:1998;1488-1490.
36. Todo T., Tsuji H., Otoshi E., Hitomi K., Kim S.T., Ikenaga M. Characterization of human homolog of (6-4) photolyase. Mutat. Res. 384:1997;195-204.
37. Ishikawa T., Matsumoto A., Kato T. DCRY is a in Drosophila photoreceptor protein implicated in light entrainment of circadian rhythm. Genes Cells. 4:1999;57-66.
38. Zhu H., Green C.B. Three cryptochromes are rhythmically expressed in Xenopus laevis retinal photoreceptors. Mol. Vis. 7:2001;210-215.
39. Batel R., Hassanein H.M.A., Schröder H.C., Müller W.E.G. Increased expression of the sponge, Geodia cydonium, homolog of the human XPB/ERCC-3 excission DNA repair gene after exposure to DNA-damaging chemical agents. Mutat. Res. 409:1998;123-133.
40. Holm-Hansen O., Lubin D., Helbing E.W. Ultraviolet radiation and its effects on organisms in aquatic environments. Young A.R., Björn L.O., Nultsch W. Environmental UV Photobiology. 1993;379-425 Plenum, New York.
41. Brasier M.D. The Cambrian explosion and the slow burning fuse. Sci. Prog. 83:2000;77-92.
42. Sancar A. No "end of history" for photolyases. Science. 272:1996;48-49.
43. Austin W.C. The relationship of silicate levels to the shallow water distribution of hexactinellids in British Columbia. Mem. Queensl. Mus. 44:1999;44.
44. Hitomi K., Kim S.T., Iwai S., Harima N., Otoshi E., Ikenaga M., Todo T. Binding and catalytic properties of Xenopus (6-4) photolyase. J. Biol. Chem. 272:1997;32591-32598.