Construction and Analysis of Photolyase Mutants of Pseudomonas aeruginosa and Pseudomonas syringae: Contribution of Photoreactivation, Nucleotide Excision Repair, and Mutagenic DNA Repair to Cell Survival and Mutability following Exposure to UV-B Radiation

Applied and Environmental Microbiology

Volumn 67, Issue 4, 2001, Pages 1405-1411

  Kim, Jae J ^a   Sundin, George W ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DEOXYRIBODIPYRIMIDINE PHOTOLYASE;

ARTICLE; DNA REPAIR; ENZYMOLOGY; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR CLONING; MUTATION; PHOTOCHEMISTRY; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; RADIATION EXPOSURE; ULTRAVIOLET RADIATION;

CLONING, MOLECULAR; DEOXYRIBODIPYRIMIDINE PHOTO-LYASE; DNA REPAIR; DNA, BACTERIAL; MUTATION; PHOTOCHEMISTRY; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; ULTRAVIOLET RAYS;

EID: 0035320736     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.67.4.1405-1411.2001     Document Type: Article

References (47)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Arrieta, J. M., M. G. Weinbauer, and G. J. Herndl. 2000. Interspecific variability in sensitivity to UV radiation and subsequent recovery in selected isolates of marine bacteria. Appl. Environ. Microbiol. 66:1468-1473.
3. Bailey, C. A., R. A. Neihof, and P. S. Tabor. 1983. Inhibitory effect of solar radiation on amino acid uptake in Chesapeake Bay bacteria. Appl. Environ. Microbiol. 46:44-49.
4. Blatny, J. M., T. Brautaset, H. C. Winther-Larsen, K. Haugan, and S. Valla. 1997. Construction and use of a versatile set of broad-host-range cloning and expression vectors based on the RK2 replicon. Appl. Environ. Microbiol. 63:370-379.
5. Bridges, B. A. 1998. DNA repair: getting past a lesion - at a cost. Curr. Biol. 8:R886-R888.
6. Croft, L., S. A. Beatson, C. B. Whitchurch, B. Huang, R. L. Blakely, and J. S. Mattick. 2000. An interactive web-based Pseudomonas aeruginosa genome database: discovery of new genes, pathways and structures. Microbiology 146:2365-2373.
7. Crosa, J. H., and S. Falkow. 1981. Plasmids, p. 266-282. In P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg, and G. B. Phillips (ed.), Manual of methods for general bacteriology, ASM Press, Washington, D.C.
8. Degiorgi, C. F., R. O. Fernandez, and R. A. Pizarro. 1996. Ultraviolet-B lethal damage on Pseudomonas aeruginosa. Curr. Microbiol. 33:141-146.
9. Echols, H. 1981. SOS functions, cancer, and inducible evolution. Cell 25:1-2.
10. Eisenstark, A. 1989. Bacterial genes involved in response to near-ultraviolet radiation. Adv. Genet. 26:99-147.
11. Figurski, D. H., and D. R. Helinski. 1979. Replication of an origin containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc. Natl. Acad. Sci. USA 79:1648-1652.
12. Friedberg, E. C., G. C. Walker, and W. Siede. 1995. DNA repair and mutagenesis. ASM Press, Washington, D.C.
13. Garcia-Pichel, F. 1994. A model for internal self-shading in planktonic organisms and its implications for the usefulness of ultraviolet sunscreen. Limnol. Oceanogr. 39:1704-1717.
14. Grant, S. G., J. Jessee, F. R. Bloom, and D. Hanahan. 1990. Differential plasmid rescue from transgenic mouse DNAs into Escherichia-coli methylation-restriction mutants. Proc. Natl. Acad. Sci. USA 87:4645-4649.
15. Hirano, S. S., and C. D. Upper. 1990. Population biology and epidemiology of Pseudomonas syringae. Annu. Rev. Phytopathol. 28:155-177.
16. Jeffrey, W. H., P. Aas, M. M. Lyons, R. B. Coffin, R. J. Pledger, and D. L. Mitchell. 1996. Ambient solar radiation-induced photodamage in marine bacterioplankton. Photochem. Photobiol. 64:419-427.
17. Jeffrey, W. H., R. J. Pledger, P. Aas, S. Hager, R. B. Coffin, R. VonHaven, and D. L. Mitchell. 1996. Diel and depth profiles of DNA photodamage in bacterioplankton exposed to ambient solar ultraviolet radiation. Mar. Ecol. Prog. Ser. 137:283-291.
18. Joux, F., W. H. Jeffrey, P. Lebaron, and D. L. Mitchell. 1999. Marine bacterial isolates display diverse responses to UV-B radiation. Appl. Environ. Microbiol. 65:3820-3827.
19. Kaiser, E., and G. J. Herndl. 1997. Rapid recovery of marine bacterioplankton activity after inhibition of UV radiation in coastal waters. Appl. Environ. Microbiol. 63:4026-4031.
20. Keane, P. J., A. Kerr, and P. B. New. 1970. Crown gall of stone fruit. II. Identification and nomenclature of Agrobacterium isolates. Aust. J. Biol. Sci. 23:585-595.
21. Kim, J.-J., and G. W. Sundin. 2000. Regulation of the rulAB mutagenic DNA repair operon of Pseudomonas syringae by UV-B (290 to 320 nanometers) radiation and analysis of rulAB-mediated mutability in vitro and in planta. J. Bacteriol. 182:6137-6144.
22. Kim, S.-T., and A. Sancar. 1993. Photochemistry, photophysics, and mechanism of pyrimidine dimer repair by DNA photolyase. Photochem. Photobiol. 57:895-904.
23. King, E. O., N. K. Ward, and D. E. Raney. 1954. Two simple media for the detection of pyocyanin and fluorescein. J. Lab. Clin. Med. 44:301-307.
24. Kovach, M. E., P. H. Elzer, D. S. Hill, G. T. Robertson, M. A. Farris, R. M. Roop, and K. M. Peterson. 1995. Four new derivatives of the broad-host-range cloning vector pBBR1mcs, carrying different antibiotic-resistance cassettes. Gene 166:175-176.
25. Lehrbach, P. R., A. H. C. Kung, and B. T. O. Lee. 1978. R plasmids which alter ultraviolet light-sensitivity and enhance ultraviolet light-induced mutability in Pseudomonas aeruginosa. J. Gen. Microbiol. 108:119-123.
26. Lyons, M. M., P. Aas, J. D. Pakulski, L. Van Waasbergen, D. L. Mitchell, R. V. Miller, and W. H. Jeffrey. 1998. Ultraviolet radiation induced DNA damage in coral reef microbial communities. Mar. Biol. 130:537-543.
27. Mullar-Niklas, G., A. Heissenberger, S. Puskeric, and G. J. Herndl. 1995. Ultraviolet-B radiation and bacterial metabolism in coastal waters. Aquat. Microb. Ecol. 9:111-116.
28. Newsham, K. K., M. N. R. Low, A. R. McLeod, P. D. Greenslade, and B. A. Emmett. 1997. Ultraviolet-B radiation influences the abundance and distribution of phylloplane fungi on pedunculate oak (Quercus robur). New Phytol. 136:287-297.
29. Pfeifer, G. P. 1997. Formation and processing of UV photoproducts: effects of DNA sequence and chromatin environment. Photochem. Photobiol. 65: 270-283.
30. Quandt, J., and M. F. Hynes. 1993. Versatile suicide vectors which allow direct selection for gene replacement in gram-negative bacteria. Gene 127: 15-21.
31. Rivera, E., L. Vila, and J. Barbe. 1997. Expression of the Pseudomonas aeruginosa uvrA gene is constitutive. Mutat. Res. 377:149-155.
32. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
33. Sancar, A., F. W. Smith, and G. B. Sancar. 1984. Purification of Escherichia coli DNA photolyase. J. Biol. Chem. 259:6028-6032.
34. Sancar, G., and F. W. Smith. 1989. Interactions between yeast photolyase and nucleotide excision repair proteins in Saccharomyces cerevisiae and Escherichia coli. Mol. Cell. Biol. 9:4767-4776.
35. Sedgwick, S. G., and P. A. Goodwin. 1985. Differences in mutagenic and recombinational DNA repair in enterobacteria. Proc. Natl. Acad. Sci. USA 82:4172-4176.
36. Stokes, H. W., and V. Krishnapillai. 1978. Prevalence of Pseudomonas aeruginosa FP plasmids which enhance spontaneous and UV-induced mutagenesis. Mutat. Res. 50:19-28.
37. Stover, C. K., X. Q. Pham, A. L. Erwin, S. D. Mizoguchi, P. Warrener, M. J. Hickey, F. S. L. Brinkman, W. O. Hufnagle, D. J. Kowalik, M. Lagrou, R. L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L. L. Brody, S. N. Coulter, K. R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, G. K.-S. Wong, Z. Wu, I. T. Paulsen, J. Reizer, M. H. Saier, R. E. W. Hancock, S. Lory, and M. V. Olson. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406:959-964.
38. Sundin, G. W., and C. L. Bender. 1993. Ecological and genetic analysis of copper and streptomycin resistance in Pseudomonas syringae pv. syringae. Appl. Environ. Microbiol. 59:1018-1024.
39. Sundin, G. W., and J. L. Jacobs. 1999. Ultraviolet radiation (UVR) sensitivity analysis and UVR survival strategies of a bacterial community from the phyllosphere of field-grown peanut (Arachis hypogeae L.). Microb. Ecol. 38:27-38.
40. Sundin, G. W., S. P. Kidambi, M. Ullrich, and C. L. Bender. 1996. Resistance to ultraviolet light in Pseudomonas syringae: sequence and functional analysis of the plasmid-encoded rulAB genes. Gene 177:77-81.
41. Sundin, G. W., and J. Murillo. 1999. Functional analysis of the Pseudomonas syringae rulAB determinant in tolerance to ultraviolet B (290-320 nm) radiation and distribution of rulAB among P. syringae pathovars. Environ. Microbiol. 1:75-87.
42. Witkin, E. M. 1976. Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli. Bacteriol. Rev. 40:869-907.
43. Woodgate, R. 1992. Construction of a umuDC operon substitution mutation in Escherichia coli. Mutat. Res. 281:221-225.
44. Woodgate, R., and S. G. Sedgwick. 1992. Mutagenesis induced by bacterial UmuDC proteins and their plasmid homologues. Mol. Microbiol. 6:2213-2218.
45. Xue, Y., and W. L. Nicholson. 1996. The two major spore DNA repair pathways, nucleotide excision repair and spore photoproduct lyase, are sufficient for the resistance of Bacillus subtilus spores to artificial UV-C and UV-B, but not to solar radiation. Appl. Environ. Microbiol. 62:2221-2227.
46. Yasuhira, S., and A. Yasui. 1992. Visible light-inducible photolyase gene from the goldfish Carassius auratus. J. Biol. Chem. 267:25644-25647.
47. Yasui, A., and A. P. M. Eker. 1998. DNA photolyases, p. 9-32. In J. A. Nickoloff and M. F. Hoekstra (ed.), DNA damage and repair, vol. 2. DNA repair in higher eukaryotes. Humana Press, Inc., Totowa, N.J.