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Volumn 4, Issue , 2003, Pages

Genome-wide prediction, display and refinement of binding sites with information theory-based models

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIC HYDROCARBON RECEPTOR; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; PREGNANE X RECEPTOR; PROTEIN P50; RNA; SYNAPTOTAGMIN; TRANSCRIPTION FACTOR;

EID: 0642279256     PISSN: 14712105     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2105-4-38     Document Type: Article
Times cited : (14)

References (22)
  • 1
    • 0020480249 scopus 로고
    • A design for computer nucleic-acid-sequence storage, retrieval, and manipulation
    • Schneider TD, Stormo GD, Haemer JS and Gold L: A design for computer nucleic-acid-sequence storage, retrieval, and manipulation. Nucleic Acids Res 1982, 10:3013-3024.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 3013-3024
    • Schneider, T.D.1    Stormo, G.D.2    Haemer, J.S.3    Gold, L.4
  • 2
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • 379-423
    • Shannon CE: A mathematical theory of communication. Bell System Technical Journal 1948, 27:379-423 and 623-656.
    • (1948) Bell System Technical Journal , vol.27 , pp. 623-656
    • Shannon, C.E.1
  • 3
    • 0028126231 scopus 로고
    • Sequence logos, machine/ channel capacity, Maxwell's demon, and molecular computers: A review of the theory of molecular machines
    • Schneider TD: Sequence logos, machine/ channel capacity, Maxwell's demon, and molecular computers: a review of the theory of molecular machines. Nanotechnology 1994, 5:1-18.
    • (1994) Nanotechnology , vol.5 , pp. 1-18
    • Schneider, T.D.1
  • 4
    • 0031583033 scopus 로고    scopus 로고
    • Information content of individual genetic sequences
    • Schneider TD: Information content of individual genetic sequences. J Theor Biol 1997, 189:427-441.
    • (1997) J. Theor. Biol. , vol.189 , pp. 427-441
    • Schneider, T.D.1
  • 5
    • 0030658850 scopus 로고    scopus 로고
    • Sequence walkers: A graphical method to display how binding proteins interact with DNA or RNA sequences
    • Schneider TD: Sequence walkers: a graphical method to display how binding proteins interact with DNA or RNA sequences. Nucleic Acids Res 1997, 25:4408-4415.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4408-4415
    • Schneider, T.D.1
  • 6
    • 0031880376 scopus 로고    scopus 로고
    • Information analysis of human splice site mutations
    • Rogan PK, Faux BM and Schneider TD: Information analysis of human splice site mutations. Hum Mutat 1998, 12:153-171.
    • (1998) Hum. Mutat. , vol.12 , pp. 153-171
    • Rogan, P.K.1    Faux, B.M.2    Schneider, T.D.3
  • 7
    • 24844449510 scopus 로고    scopus 로고
    • Modeling differential binding of NF-kB p50 to a CYP2D6 promotor variant by information theory
    • [abstract]
    • Hurwitz I, Svojanovsky S, Leeder JS and Rogan PK: Modeling differential binding of NF-kB p50 to a CYP2D6 promotor variant by information theory [abstract]. American Journal of Human Genetics 2001, 69:s476.
    • (2001) American Journal of Human Genetics , vol.69
    • Hurwitz, I.1    Svojanovsky, S.2    Leeder, J.S.3    Rogan, P.K.4
  • 11
    • 0038070292 scopus 로고    scopus 로고
    • Information theory-based analysis of CYP2C19, CYP2D6 and CYP3A5 splicing mutations
    • Rogan PK, Svojanovsky S and Leeder JS: Information theory-based analysis of CYP2C19, CYP2D6 and CYP3A5 splicing mutations. Pharmacogenetics 2003, 13:207-218.
    • (2003) Pharmacogenetics , vol.13 , pp. 207-218
    • Rogan, P.K.1    Svojanovsky, S.2    Leeder, J.S.3
  • 15
    • 0037162497 scopus 로고    scopus 로고
    • SCORE: A computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation
    • Rebeiz M, Reeves NL and Posakony JW: SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation. Proc Natl Acad Sci U S A 2002, 99:9888-9893.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 9888-9893
    • Rebeiz, M.1    Reeves, N.L.2    Posakony, J.W.3
  • 16
    • 0033998436 scopus 로고    scopus 로고
    • Characterization of human RNA splice signals by iterative functional selection of splice sites
    • Lund M, Tange TO, Dyhr-Mikkelsen H, Hansen J and Kjems J: Characterization of human RNA splice signals by iterative functional selection of splice sites. RNA 2000, 6:528-544.
    • (2000) RNA , vol.6 , pp. 528-544
    • Lund, M.1    Tange, T.O.2    Dyhr-Mikkelsen, H.3    Hansen, J.4    Kjems, J.5
  • 17
    • 0033081269 scopus 로고    scopus 로고
    • Using sequence logos and information analysis of Lrp DNA binding sites to investigate discrepanciesbetween natural selection and SELEX
    • Shultzaberger RK and Schneider TD: Using sequence logos and information analysis of Lrp DNA binding sites to investigate discrepanciesbetween natural selection and SELEX. Nucleic Acids Res 1999, 27:882-887.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 882-887
    • Shultzaberger, R.K.1    Schneider, T.D.2
  • 18
    • 24844441166 scopus 로고    scopus 로고
    • Delila programs documentation
    • Schneider TD: Delila programs documentation. http://www.lecb.ncifcrf.gov/~toms/delila/delilaprograms.html 2003.
    • (2003)
    • Schneider, T.D.1
  • 19
    • 0027054380 scopus 로고
    • Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites
    • Stephens RM and Schneider TD: Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites. J Mol Biol 1992, 228:1124-1136.
    • (1992) J. Mol. Biol. , vol.228 , pp. 1124-1136
    • Stephens, R.M.1    Schneider, T.D.2
  • 20
    • 0033533953 scopus 로고    scopus 로고
    • Measuring molecular information
    • Schneider TD: Measuring molecular information. J Theor Biol 1999, 201:87-92.
    • (1999) J. Theor. Biol. , vol.201 , pp. 87-92
    • Schneider, T.D.1
  • 21
    • 0346942394 scopus 로고    scopus 로고
    • Monitoring expression of genes involved in drug metabolism and toxicology using DNA microarrays
    • Gerhold D, Lu M, Xu J, Austin C, Caskey CT and Rushmore T: Monitoring expression of genes involved in drug metabolism and toxicology using DNA microarrays. Physiol Genomics 2001, 5:161-170.
    • (2001) Physiol. Genomics , vol.5 , pp. 161-170
    • Gerhold, D.1    Lu, M.2    Xu, J.3    Austin, C.4    Caskey, C.T.5    Rushmore, T.6
  • 22
    • 0035201366 scopus 로고    scopus 로고
    • Rifampin is a selective, pleiotropic inducer of drug metabolism genes in human hepatocytes: Studies with cDNA and oligonucleotide expression arrays
    • Rae JM, Johnson MD, Lippman ME and Flockhart DA: Rifampin is a selective, pleiotropic inducer of drug metabolism genes in human hepatocytes: studies with cDNA and oligonucleotide expression arrays. J Pharmacol Exp Ther 2001, 299:849-857.
    • (2001) J. Pharmacol. Exp. Ther. , vol.299 , pp. 849-857
    • Rae, J.M.1    Johnson, M.D.2    Lippman, M.E.3    Flockhart, D.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.