Genetic Diversity and Phylogenetic Relationships in the Genus Lycopersicon (Tourn.) Mill. as Revealed by Inter-Simple Sequence Repeat (ISSR) Analysis

Russian Journal of Genetics

Volumn 38, Issue 8, 2002, Pages 958-966

  Kochieva, E Z ^a   Ryzhova, N N ^a   Khrapalova, I A ^b   Pukhalskyi, V A ^a  

^a VAVILOV INSTITUTE OF GENERAL GENETICS   (Russian Federation)

^b RUSSIAN ACADEMY OF SCIENCES   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

LYCOPERSICON; LYCOPERSICON ESCULENTUM; LYCOPERSICON PERUVIANUM; LYCOPERSICON PIMPINELLIFOLIUM;

EID: 0348237239     PISSN: 10227954     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1016896013986     Document Type: Article

References (35)

1. Wang, Z., Weber, J.L., Zhong, G., and Tanksley, S.D., Survey of Plant Short Tandem DNA Repeats, Theor. Appl. Genet., 1994, vol. 88, pp. 1-6.
2. Condit, R. and Hubbell, S.P., Abundance and DNA Sequence of Two-Base Repeat Regions in Tropical Tree Genomes, Genome, 1991, vol. 34, pp. 66-71.
3. Lagercrants, U., Ellegren, H., and Andersson, L., The Abundance of Various Polymorphic Microsatellite Motifs Differs between Plants and Vertebrates, Nucleic Acids Res., 1993, vol. 21, pp. 1111-1115.
4. Smulders, M.J.M., Bredemejer, G., Rus-Kortekaas, W., et al., Use of Short Microsatellites from Database Sequences to Generate Polymorphism among Lycopersicon esculentum Cultivars and Accessions of Other Lycopersicon Species, Theor. Appl. Genet., 1997, vol. 97, pp. 264-272.
5. Panaud, O., Chen, X., and McCouch, S.R., Development of Microsatellite Markers and Characterization of Simple Sequence Length Polymorphism (SSLP) in Rice (Oryza sativa L.), Mol. Gen. Genet., 1996, vol. 252, pp. 597-607.
6. Bell, C.J. and Ecker, J.K., Assignment of 30 Microsatellite Loci to the Linkage Map of Arabidopsis, Genetics, 1994, vol. 19, pp. 137-144.
7. Zietkiewicz, E., Rafalski, A., and Labuda, D., Genome Fingerprinting by Simple Sequence Repeat (SSR)-Anchored Polymerase Chain Reaction Amplification, Genetics, 1994, vol. 20, pp. 176-183.
8. Wu, K.-S., Jones, R., Danneberger, L., and Scolnik, P.A., Detection of Microsatellite Polymorphism without Cloning, Nucleic Acids Res., 1994, vol. 22, pp. 3257-3258.
9. Fang, D.Q. and Roose, M.L., Identification of Closely Related Citrus Cultivars with Inter-Simple Sequence Repeats Markers, Theor. Appl. Genet., 1997, vol. 95, pp. 408-417.
10. Wolfe, A.D., Xiang, Q.-Y., and Kephard, S.R., Assessing Hybridization in Natural Populations of Pestemon (Scrophulariaceae) Using Hypervariable Inter-Simple Sequence Repeat (ISSR) Bands, Mol. Ecol, 1998, vol. 7, pp. 1107-1125.
11. Prevost, A. and Wilkinson, M.J., A New System of Comparing PCR Primers Applied to ISSR Fingerprinting of Potato Cultivars, Theor. Appl Genet., 1999, vol. 98, pp. 107-112.
12. Moreno, S., Martin, J.P., and Ortiz, J.M., Inter-Simple Sequence Repeats PCR for Characterization of Closely Related Grapevine Germplasm, Euphytica, 1998, vol. 101, pp. 117-125.
13. Blair, M.W., Panaud, O., and McCough, S.R., Inter-Simple Sequence Repeat (ISSR) Amplification for Analysis of Microsatellite Motif Frequency and Fingerprinting in Rice (Oryza sativa L.), Theor. Appl. Genet., 1999, vol. 98, pp. 780-792.
14. Joshi, S.P., Gupta, V.S., Aggarwal, R.K., et al., Genetic Diversity and Phylogenetic Relationship as Revealed by Inter-Simple Sequence Repeat (ISSR) Polymorphism in the Genus Oryza, Theor. Appl. Genet., 2000, vol. 100, pp. 1311-1320.
15. Gilbert, J.E., Lewis, R.V., Wilkinnson, M.J., and Caligari, P.D.S., Developing an Appropriate Strategy to Assess Genetic Variability in Plant Germplasm Collections, Theor. Appl. Genet., 1999, vol. 98, pp. 1125-1131.
16. Wang, G., Mahalingam, R., and Knap, H.T., (C-A) and (G-A) Anchored Simple Sequence Repeats (ASSRs) Generated Polymorphism in Soybean, Glycine max (L.) Merr., Theor. Appl. Genet., 1998, vol. 96, pp. 1086-1096.
17. Salimath, S.S., de Oliveira, A.C., Gogwin, I.D., and Bennetzen, J.L., Assessment of Genome Origins and Genetic Diversity in the Genus Eleusine with DNA Markers, Genome, 1995, vol. 38, pp. 757-763.
18. Nagaoka, T. and Ogihara, Y., Applicability of Inter-Simple Sequence Repeat Polymorphisms in Wheat for Use as DNA Markers in Comparison to RFLP and RAPD Markers, Theor. Appl. Genet., 1997, vol. 94, pp. 597-602.
19. Wolff, K. and Morgan-Richards, M., PCR Markers Distinguish Plantago majer Subspecies, Theor. Appl. Genet., 1998, vol. 96, pp. 282-286.
20. Muller, C.H., A Revision of the Genus Lycopersicon, USDA Misc. Publ., 1940, vol. 328, p. 29.
21. Brezhnev, D.D., Tomato Lycopersicon Tourn., in Kul'turnayaflora SSSR (Cultivated Flora of the Soviet Union), Moscow, 1958.
22. Rick, C.M., Tomato, Evolution of Crop Plants, Simmonds, N.W., Ed., London: Longman, 1976, pp. 268-273.
23. Khrapalova, I.A., The Genus Lycopersicon (Tourn.) Mill., Tr. Prikl. Bot., Genet. Sel., 1999, vol. 157, pp. 24-55.
24. Khrapalova, I.A., The History of Taxonomy and Nomenclature of the Genus Lycopersicon (Solanaceae), Tr. Prikl. Bot., Genet. Sel., St. Petersburg, 1999, vol. 157, pp. 13-24.
25. Rick, C.M. and Yoder, J.I., Classical and Molecular Genetics of the Tomato: Highlights and Prospects, Annu. Rev. Genet., 1988, vol. 22, pp. 282-300.
26. Rick, C.M., Tomato (Lycopersicon), Isozymes in Plant Genetics and Breeding, Tanksley, S.D. and Orton, T.J., Eds., Amsterdam: Elsevier, 1983, pp. 147-165.
27. Palmer, J.D. and Zamir, D., Chloroplast DNA Evolution and Phylogenetic Relationships in Lycopersicon, Proc. Natl. Acad. Sci. USA, 1982, vol. 79, pp. 5006-5010.
28. McClean, P.E. and Hanson, M.R., Mitochondrial DNA Sequence Divergence among Lycopersicon and Related Solanum Species, Genetics, 1986, vol. 112, pp. 649-667.
29. Miller, J.C. and Tanksley, S.D., RFLP Analysis of Phylogenetic Relationships and Genetic Variation in the Genus Lycopersicon, Theor. Appl. Genet., 1990, vol. 80, pp. 437-448.
30. Klein-Lankhorst, R.M., Vermut, A., Weide, R., et al., Isolation of Molecular Markers for Tomato (Lycopersicon esculentum) Using Random Amplified Polymorphic DNA (RAPD), Theor. Appl. Genet., 1991, vol. 83, pp. 108-114.
31. Kochieva, E.Z., Ryzhova, N.N., Khrapalova, I.A., and Pukhal'skii, V.A., Application of RAPD Analysis to Study the Genetic Polymorphism and Phylogenetic Relationships in the Genus Lycopersicon (Tourn.) Mill., Genetika (Moscow), 2002, vol. 38, no. 9
32. Cekic, C., Battey, N.H., and Wilkinson, M.J., The Potential of ISSR-PCR Primer Pair Combinations for Genetic Linkage Analysis Using the Seasonal Flowering Locus in Fragaria as a Model, Theor. Appl. Genet., 2001, vol. 103, pp. 540-546.
33. Kochieva, E.Z. and Suprunova, T.P., Identification of Inter- and Intraspecific Polymorphisms in Tomato, Genetika (Moscow), 1999, vol. 35, pp. 1194-1197.
34. Williams, C.E. and Clair, D.A., Phenetic Relationships and Levels of Variability Detected by Restriction Fragment Length Polymorphisms and Random Amplified Polymorphic DNA Analysis of Cultivated and Wild Accessions of Lycopersicon esculentum, Genome, 1993, vol. 36, no. 3, pp. 619-630.
35. Rick, C.M. and Lamm, R., Biosystematic Studies on the Status of Lycopersicon chilense, Am. J. Bot., 1955, vol. 42, pp. 663-675.