Brome mosaic virus, good for an RNA virologist's basic needs

Molecular Plant Pathology

Volumn 1, Issue 2, 2000, Pages 91-97

  Cheng Kao, C ^a   Sivakumaran, K ^a  

^a INDIANA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0347966546     PISSN: 14646722     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1364-3703.2000.00017.x     Document Type: Article

References (95)

1. Adkins, S., Siegel, R., Sun, J. and Kao, C. (1997) Minimal templates directing accurate initiation of subgenomic RNA synthesis in vitro by the brome mosaic virus RNA-dependent RNA polymerase. RNA, 3, 634-647.
2. Adkins, S., Stawicki, S., Faurote, G., Siegel, R. and Kao, C. (1998) Mechanistic analysis of RNA synthesis RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase. RNA, 4, 455-470.
3. Adkins, S. and Kao, C. (1998) Subgenomic RNA promoters dictate the mode of recognition by bromoviral RNA-dependent RNA polymerases. Virology, 252, 1-8.
4. Ahlquist, P. (1992) Bromovirus RNA replication and transcription. Curr. Opin. Genet. Dev. 2, 71-76.
5. Ahlquist, P., Luckow, V. and Kaesberg, P. (1981) Complete nucleotide sequence of brome mosaic virus RNA3. J. Mol. Biol. 153, 23-38.
6. Ahlquist, P., Dasgupta, R. and Kaesberg, P. (1984a) Nucleotide sequence of brome mosaic virus genome and its implication for virus replication. J. Mol. Biol. 172, 369-383.
7. Ahlquist, P., French, R., Janda, M. and Loesch-Fries, L.S. (1984b) Multicomponent RNA plant virus infection derived from cloned viral cDNA. Proc. Natl Acad. Sci. USA, 81, 7066-7070.
8. Ahlquist, P., Strauss, E.G., Rice, C.M., Strauss, J.H., Haseloff, J. and Zimmern, D. (1985) Sindbis virus proteins nsP1 and nsP2 contain homology to nonstructural proteins from several RNA plant viruses. J. Virol. 53, 536-542.
9. Ahlquist, P. and Janda, M. (1984) cDNA clongin and in vitro transcription of the complete brome mosaic virus genome. Mol. Cell. Biol. 4, 2876-2882.
10. Ahola, T. and Ahlquist, P. (1999) Putative RNA capping activities encoded by brome mosaic virus: methylation and covalent binding of guanylate by replicase protein 1a. J. Virol. 73, 10061-10069.
11. Buck, K.W. (1996) Comparison of the replication of positive-stranded viruses of plants and animals. Adv. Virus Res. 47, 159-251.
12. Bujarski, J.J. and Kaesberg, P. (1986) Genetic recombination between RNA components of a multipartite plant virus. Nature, 321, 528-531.
13. Bujarski, J.J. and Nagy, P.D. (1996) Different mechanisms of homologous and nonhomologous recombination in brome mosaic virus: role of RNA sequences and replicase proteins. Semin. Virol. 7, 363-372.
14. Chapman, M., Rao, A.L.N. and Kao, C. (1998) The 5′ end of BMV RNAs promotes initiation of (-)-strand RNA synthesis in vitro and in vivo. Virology, 252, 458-467.
15. Chapman, M. and Kao, C. (1999) A minimal RNA promoter for minusstrand RNA synthesis by the brome mosaic virus polymerase complex. J. Mol. Biol. 286, 709-720.
16. Damayanti, T.A., Nagano, H., Mise, K., Furusawa, I. and Okuno, T. (1999) Brome mosaic virus defective RNAs generated during infection of barley plants. J. Gen. Virol. 80, 2511-2518.
17. DeJong, W. and Ahlquist, P. (1991) Bromovirus host specificity and systemic infection. Semin. Virol. 2, 97-105.
18. DeJong, W. and Ahlquist, P. (1995) Host-specific alterations in viral RNA accumulation and infection spread in a brome mosaic virus isolate with an expanded host range. J. Virol. 69, 1485-1492.
19. Deom, C.M., Lapidot, M. and Beachy, R.N. (1992) Plant virus movement proteins. Cell, 69, 221-224.
20. Dinant, S., Janda, M., Kroner, P. and Ahlquist, P. (1993) Bromovirus RNA replication and transcription require compatibility between the polymerase-and helicase-like viral RNA synthesis proteins. J. Virol. 67, 7181-7189.
21. Ding, X.S., Flasinski, S. and Nelson, R.S. (1999) Infection of barley by brome mosaic virus is restricted predominantly to cells in and associated with veins through a temperature-dependent mechanism. Molec. Plant-Microbe Interact. 12, 615-623.
22. Dreher, T.W. and Hall, T.C. (1988) Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity. J. Mol. Biol. 201, 31-40.
23. Duggal, R. and Hall, T.C. (1993) Identification of domains in brome mosaic virus RNA-1 and coat protein necessary for specific interaction and encapsidation. J. Virol. 67, 6406-6412.
24. Duggal, R. and Hall, T.C. (1995) Interaction of host proteins with the plus-strand promoter for brome mosaic virus RNA2. Virology, 214, 638-641.
25. Figlerowicz, M., Nagy, P.D. and Bujarski, J.J. (1997) A mutation in the putative RNA polymerase gene inhibits nonhomologous, but not homologous, genetic recombination in an RNA virus. Proc. Natl Acad. Sci. USA, 94, 2073-2078.
26. Figlerowicz, M., Nagy, P.D., Tang, N., Kao, C. and Bujarski, J. (1998) Mutations in the N-terminus of the brome mosaic virus polymerase affect genetic RNA-RNA recombination. J. Virol. 72, 9192-9200.
27. Flasinski, S., Dzianott, A., Pratt, S. and Bujarski, J.J. (1995) Mutational analysis of the coat protein gene of brome mosaic virus: effects on replication and movement in barley and in Chenopodium hybridum. Mol. Plant-Microbe Interact. 8, 23-31.
28. Flasinski, S., Dzianott, A., Speir, J.A., Johnson, J.E. and Bujarski, J.J. (1997) Structure-based rationale for the rescue of systemic movement of brome mosaic virus by spontaneous second-site mutations in the coat protein gene. J. Virol. 71, 2500-2504.
29. Fox, J.M., Johnson, J.E. and Young, M.J. (1994) RNA/protein interactions in icosahedral virus assembly. Semin. Virol. 5, 51-60.
30. French, R. and Ahlquist, P. (1987) Intercistronic as well as terminal sequence are required for efficient amplification of brome mosaic virus RNA3. J. Virol. 61, 1457-1465.
31. Fujita, Y., Mise, K., Okuno, T., Ahlquist, P. and Furusawa, I. (1996) A single codon change in a conserved motif of a bromovirus movement protein gene confers compatibility with a new host. Virology, 223, 283-291.
32. Hardy, S.F., German, T.L., Loesch-Fries, L.S. and Hall, T.C. (1979) Highly active template-specific RNA-dependent RNA polymerase from barley leaves infected with brome mosaic virus. Proc. Natl Acad. Sci. USA, 76, 4956-4960.
33. Horikoshi, M., Nakayama, M., Yamaoka, N., Furosawa, I. and Shishyama, J. (1987) Brome mosaic virus coat protein inhibits viral RNA synthesis in vitro. Virology, 158, 15-19.
34. Hull, R. (1991) The movement of viruses within plants. Semin. Virol. 2, 89-95.
35. Ishihama, A. and Barbier, P. (1994) Molecular anatomy of viral RNA-dependent RNA polymerases. Arch. Virol. 134, 235-258.
36. Ishikawa, M., Diez, J., Restropo-Hartwig, M. and Ahlquist, P. (1997) Yeast mutations in multiple complementation groups inhibit brome mosaic virus RNA replication and transcription and perturb regulated expression of the viral polymerase-like gene. Proc. Natl Acad. Sci. USA, 94, 13810-13815.
37. Janda, M. and Ahlquist, P. (1998) Brome mosaic virus RNA replication protein 1a dramatically increases in vivo stability but not translation of viral genomic RNA3. Proc. Natl Acad. Sci. USA, 95, 2227-2232.
38. Janda, M. and Ahlquist, P. (1993) RNA-dependent replication, transcription, and persistence of brome mosaic virus RNA replicons in Saccharomyces cerevisiae. Cell, 72, 961-970.
39. Kadarei, G. and Haenni, A.L. (1997) Virus-encoded RNA helicases. J. Virol. 71, 2583-2590.
40. Kao, C. and Ahlquist, P. (1992) Identification of the domains required for direct interaction of the helicase-like and polymerase-like RNA replication proteins of brome mosaic virus. J. Virol. 66, 7293-7302.
41. Kao, C, Quadt, R., Hershberger, R. and Ahlquist, P. (1992) Brome mosaic virus RNA replication proteins 1a and 2a form a complex in vitro. J. Virol. 66, 6322-6329.
42. Kao, C. and Sun, J. (1996) The RNA-dependent RNA polymerase of a (+)-strand RNA virus uses oligoribonucleotide primers to initiate (-)-strand RNA synthesis. J. Virol. 70, 6826-6830.
43. Kasteel, D.T.J., van der Wel, N.N., Jansen, K.A.J. and van Lent, J.W.M. (1997) Tubule-forming capacity of the movement proteins of alfalfa mosaic virus and brome mosaic virus. J. Gen. Virol. 78, 2089-2093.
44. Kong, F., Sivakumaran, K. and Kao, C. (1999) The N-terminal half of the brome mosaic virus 1a protein as RNA capping-associated activities: Specificity for GTP S-adenosylmethionine. Virology 259, 200-210.
45. Krol, M.A., Olson, N.H., Tate, J., Johnson, J.E., Baker, T.S. and Ahlquist, P. (1999) RNA-controlled polymorphism in the in vivo assembly of 180-subunit and 120-subunit virions from a single capsid protein. Proc. Natl Acad. Sci. USA, 96, 13650-13655.
46. Lahser, F.C., Marsh, L. and Hall, T.C. (1993) Contributions of the brome mosaic virus RNA3, 3′-nontranslated region to replication and translation. J. Virol. 67, 3295-3303.
47. Lai, M. (1998) Cellular factors in the transcription and replication of viral RNA genomes: a parallel to DMA-dependent RNA transcription. Virology, 244, 1-12.
48. Lane, L.C. (1974) The bromoviruses. Adv. Virus Res. 19, 151-220.
49. Lane, L.C. (1981) Bromoviruses. In Handbook of Plant Virus Infections and Comparative Diagnosis (E. Kurstak, ed.). Amsterdam: Elsevier/ North-Holland Press, pp. 333-376.
50. Lucas, W.J. and Gilbertson, R.L. (1994) Plasmadesmata in relationship to viral movement within leaf tissues. Annu. Rev. Phytopathol. 32, 287-412.
51. Marsh, L.E., Dreher, T.W. and Hall, T.C. (1988) Mutational analysis of the core and modulator sequences of the BMV RNA3 subgenomic promoter. Nucl. Acids Res. 16, 981-995.
52. Marsh, L. Huntley, C.C, Pogue, G.P., Connell, J. and Hall, T.C. (1991) Regulation of (+):(-)-strand asymmetry in replication of brome mosaic virus RNA. Virol. 182, 76-83.
53. Mise, K. and Ahlquist, P. (1995) Host-specificity restriction by bromovirus cell-to-cell movement protein occurs after initial cell-to-cell spread of infection in nonhost plants. Virology, 206, 276-286.
54. Mise, K., Allison, R.F., Janda, M. and Ahlquist, P. (1993) Bromovirus movement protein genes play a crucial role in host specificity. J. Virol. 67, 2815-2823.
55. Nagy, P.D. and Bujarski, J.J. (1996) Homologous RNA recombination in brome mosaic virus: AU rich sequences decrease the accuracy of crossovers. J. Virol. 70, 415-426.
56. Nagy, P.D. and Bujarski, J.J. (1997) Engineering of homologous recombination hot spots with All-rich sequences in brome mosaic virus. J. Virol. 71, 3799-3810.
57. Nagy, P.D. and Simon, A.E. (1997) New insights into the mechanisms of RNA recombination. Virol. 235, 1-9.
58. Nagy, P.D., Dzianott, A., Ahlquist, P. and Bujarski, J. (1995) Mutations in the helicase-like domain of protein 1a alter the sites of RNA-RNA recombination in brome mosaic virus. J. Virol. 69, 2547-2556.
59. Nagy, P.D. and Bujarski, J.J. (1998) Silencing homologous recombination hot spots with GC-rich sequences in brome mosaic virus. J. Virol. 72, 1122-1130.
60. Nagy, P.D., Ogiela, C. and Bujarski, J.J. (1999) Mapping sequences active in homologous RNA recombination in brome mosaic virus: prediction of recombination hot spots. Virology, 254, 92-104.
61. O'Reilly, E. and Kao, C. (1998) Analysis of the structure and function of viral RNA-dependent RNA polymerases as guided by computer-assisted structure predictions and the known structures of polymerases. Virology, 252, 287-303.
62. O'Reilly, E., Tang, N., Ahlquist, P. and Kao, C. (1995) Biochemical and genetic analyses of the interaction between the helicase-like and polymerase-like proteins of the brome mosaic virus. J. Virol. 214, 59-71.
63. O'Reilly, E., Paul, J. and Kao, C. (1997) Analysis of the interaction of viral RNA replication proteins by using the yeast two-hybrid assay. J. Virol. 71, 7526-7532.
64. O'Reilly, E., Wang, Z., French, R. and Kao, C. (1998) Interaction between the structural domains of the RNA replication proteins of plant-infecting RNA viruses. J. Virol. 72, 7160-7169.
65. Osman, F., Grantham, G.L. and Rao, A.L.N. (1997) Molecular studies on bromovirus capsid protein. IV. Coat protein exchanges between brome mosaic virus and cowpea chlorotic mottle viruses exhibit neutral effects in heterologous hosts. Virology, 238, 452-459.
66. Osman, F., Choi, Y.G., Grantham, G.L. and Rao, A.L.N. (1998) Molecular studies on bromovirus capsid protein. V. Evidence for the specificity of brome mosaic virus encapsidation using RNA3 chimera of brome mosaic and cucumber mosaic viruses expressing heterologous coat proteins. Virology, 261, 438-448.
67. Pogue, G. and Hall, T.C. (1992) The requirement for a 5′ stem-loop structure in brome mosaic virus replication supports a new model for viral positive strand RNA synthesis. J. Virol. 66, 674-684.
68. Quadt, R., Kao, C.C., Browning, K.S., Hershberger, R.P. and Ahlquist, P. (1993) Characterization of a host protein associated with brome mosaic virus RNA-dependent RNA polymerase. Proc. Natl Acad. Sci. USA, 90, 1498-1502.
69. Quadt, R., Ishikawa, M., Janda, M. and Ahlquist, P. (1995) Formation of brome mosaic virus RNA-dependent RNA polymerase in yeast requires coexpression of viral proteins and viral RNA. Proc. Natl Acad. Sci. USA, 92, 4892 -4896.
70. Rao, A.L.N. and Grantham, G.L. (1995a) A spontanious mutation in the movement protein gene of brome mosaic virus modulates symptom phenotype in Nicotiana benthamiana. J. Virol. 69, 2689-2691.
71. Rao, A.L.N. and Grantham, G.L. (1995b) Biological significance of the seven amino-terminal basic residues of brome mosaic virus coat protein. Virology, 211, 42-52.
72. Rao, A.L.N. and Grantham, G.L. (1996) Molecular studies on bromovirus capsid protein. II. Functional analysis of the amino-terminal arginine-rich motif and its role in encapsidation, movement and pathology. Virology, 226, 294-305.
73. Rao, A.L.N. and Hall, T.C. (1993) Recombination and polymerase error facilitates restoration of infectivity in brome mosaic virus. J. Virol. 67, 969-979.
74. Rao, A.L.N., Sullivan, B.P. and Hall, T.C. (1990) Use of Chenopodium hybridum facilitates isolation of brome mosaic virus RNA recombinants. J. Gen. Virol. 71, 1403 -1407.
75. Rao, A.L.N., Dreher, T., Marsh, L.E. and Hall, T.C. (1989) Telomeric function of the tRNA-like structure of brome mosaic virus RNA. Proc. Natl Acad. Sci. USA, 86, 5335-5339.
76. Restrepo-Hartwig, M. and Ahlquist, P. (1996) Brome mosaic virus helicase-and polymerase-like proteins colocalize on the endoplasmic reticulum at sites of viral RNA synthesis. J. Virol. 70, 8908-8916.
77. Restrepo-Hartwig, M. and Ahlquist, P. (1999) Brome mosaic virus RNA replication proteins 1a and 2a colocalize and 1a independently localizes on the yeast endoplasmic reticulum. J. Virol. 73, 10303-10309.
78. Sacher, R. and Ahlquist, P. (1989) Effects of deletions in the N-terminal basic arm of brome mosaic virus coat protein on RNA packaging and systemic infection. J. Virol. 63, 4545-4552.
79. Schmilz, I. and Rao, A.L.N. (1996) Molecular studies on bromovirus capsid protein. I. Characterization of cell-to-cell movement defective RNA3 variants of brome mosaic virus. Virology, 226, 281-293.
80. Schuman, S. and Schwer, B. (1995) RNA capping enzymes and DNA ligases, a superfamily of covalent nucleotidyl transferases. Mol. Microbiol. 17, 405-410.
81. Shih, D.S. and Kaesberg, P. (1973) Translation of brome mosaic virus ribonucleic acid in a cell free system derived from wheat embryo. Proc. Natl Acad. Sci. USA, 70, 1799-1803.
82. Siegel, R., Adkins, S. and Kao, C. (1997) Sequence-specific recognition of an RNA promoter by a viral RNA polymerase. Proc. Natl Acad. Sci. USA, 94, 11238-11243.
83. Siegel, R., Bellon, L, Beigelman, L. and Kao, C. (1998) Identification of the base moieties in an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase. Proc. Natl Acad. Sci. USA. 95, 11613-11618.
84. Sivakumaran, K. and Kao, C. (1999) Initiation of genomic (+)-strand RNA synthesis from DNA and RNA templates by a viral RNA-dependent RNA polymerase. J. Virol. 73, 6415-6423.
85. Sivakumaran, K., Kim, C.H., Tayon, R. and Kao, C. (1999) RNA sequence and structural determinants for the recognition and efficiency of RNA synthesis by a viral RNA replicase. J. Mol. Biol. 294, 667-682.
86. Smirnyagina, E., Hsu, Y.-H., Chua, N. and Ahlquist, P. (1994) Second-site mutations in the brome mosaic virus RNA3 intercistronic region partially suppress a defect in coat protein mRNA transcription. Virology, 198, 427-436.
87. Smirnyagina, E., Lin, N. and Ahlquist, P. (1996) The polymerase-like core of brome mosaic virus 2a protein, lacking a region interacting with viral 1a in vitro, maintains activity and 1a selectivity in RNA replication. J. Virol. 70, 4729-4736.
88. Stawicki, S. and Kao, C. (1999) Spatial requirements for promoter recognition by a viral RNA-dependent RNA polymerase. J. Virol. 73, 198-204.
89. Sullivan, M. and Ahlquist, P. (1997) Cis-acting signals in bromovirus RNA replication and gene expression: networking with viral proteins and host factors. Semin. Virol. 8, 221-230.
90. Sullivan, M.L. and Ahlquist, P. (1999) A brome mosaic virus intergenic RNA3 replication signal functions with viral replication protein 1a to dramatically stabilize RNA in vivo. J. Virol. 73, 2622-2632.
91. Sun, J., Adkins, S., Faurote, G. and Kao, C. (1996) Initiation of (-)-strand RNA synthesis catalyzed by the brome mosaic virus RNA-dependent RNA polymerase: synthesis of oligonucleotides. Virology, 226, 1-12.
92. Sun, J. and Kao, C. (1997a) Characterization of RNA products associated with or aborted by a viral RNA-dependent RNA polymerase. Virology, 236, 348-353.
93. Sun, J. and Kao, C. (1997b) RNA synthesis by the brome mosaic virus RNA-dependent RNA polymerase: transition from initiation to elongation. Virology, 233, 63-73.
94. Traynor, P., Young, B.M. and Ahlquist, P. (1991) Deletion analysis of brome mosaic virus 2a protein: Effects on RNA replication and systemic spread. J. Virol. 65, 2807-2815.
95. Van Lent, J., Storms, M., Van der Meer, F., Wellink, J., Goldbach, R. (1991) Tubular structures involved in movement of cowpea mosaic virus are also formed in infected cowpea protoplasts. J. Gen. Virol. 72, 2615-2623.