Different mechanisms of homologous and nonhomologous recombination in brome mosaic virus: Role of RNA sequences and replicase proteins

Seminars in Virology

Volumn 7, Issue 6, 1996, Pages 363-372

  Bujarski, Jozef J ^a   Nagy, Peter D ^b  

^a NORTHERN ILLINOIS UNIVERSITY   (United States)

^b UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

Brome mosaic virus; Homologous recombination; Replicase proteins; RNA recombination

Indexed keywords

DOUBLE STRANDED RNA; MUTANT PROTEIN; RECOMBINANT RNA; RNA DIRECTED RNA POLYMERASE; VIRUS RNA;

MOSAIC VIRUS; NONHUMAN; REVIEW; RNA SEQUENCE; RNA VIRUS; SEQUENCE HOMOLOGY; VIRUS REPLICATION;

EID: 0030425597     PISSN: 10445773     EISSN: None     Source Type: Journal    
DOI: 10.1006/smvy.1996.0044     Document Type: Review

References (24)

1. 1. Hirst GK (1962) Genetic recombination with Newcastle disease virus, polioviruses, and influenza virus. Cold Spring Harbor Quant Biol 27:303-309
2. 2. Ledinko N (1963) Genetic recombination with poliovirus type 1: studies of crosses between normal horse serum-resistant mutants of the same strain. Virology 20:107-119
3. 3. Cooper P (1977) Genetics of picornaviruses, in Comprehensive Virology (Fraenkel-Conradt H, Wagner R, eds) Vol. 9, pp 133-207. Plenum Press, New York
4. 4. Lai MMC, Baric RS, Makino S, Keck JG, Egbert J, Leibowitz JL, Stohlman SA (1985) Recombination between nonsegmented RNA genomes of murine coronaviruses. J Virol 56:449-456
5. 5. Bujarski JJ, Kaesberg P (1986) Genetic recombination between RNA components of a multipartite plant virus. Nature 321:528-531
6. 6. Ahlquist P (1992) Bromovirus RNA replication and transcription. Curr Opin Genet Dev 2:71-76
7. 7. Rao ALN, Hall TC (1990) Requirement for a viral trans-acting factor encoded by brome mosaic virus RNA-2 provides strong selection in vivo for functional recombinants. J Virol 64:2437-2441
8. 8. Ishkawa M, Kroner P, Ahlquist P, Meshi T (1991) Biological activities of hybrid RNAs generated by 3′-end exchanges between tobacco mosaic and brome mosaic viruses. J Virol 65:3451-3459
9. 9. Nagy PD, Bujarski JJ (1992) Genetic recombination in brome mosaic virus: effect of sequence and replication of RNA on accumulation of recombinants. J Virol 66:6824-6828
10. 10. Rao ALN, Sullivan BP, Hall TC (1990) Use of Chenopodium hybridum facilitates isolation of brome mosaic virus RNA recombinants. J Gen Virol 71:1403-1407
11. 11. Bujarski JJ, Dzianott AM (1991) Generation and analysis of nonhomologous RNA-RNA recombinants in brome mosaic virus: Sequence complementarities at crossover sites. J Virol 65:4153-4159
12. 12. Allison RF, Thompson G, Ahlquist P (1990) Regeneration of a functional RNA virus genome by recombination between deletion mutants and requirement for cowpea chlorotic mottle virus 3a and coat genes for systemic infection. Proc Nat Acad Sci USA 87:1820-1824
13. 13. Bujarski JJ, Nagy PD, Flasinski S (1994) Molecular studies of genetic RNA-RNA recombination in brome mosaic virus. Adv Virus Res 43:275-302
14. 14. Bujarski JJ, Nagy PD (1994) Genetic RNA-RNA recombination in positive-stranded RNA viruses of plants, in Homologous Recombination in Plants (Paszkowski J, ed.) p 1-24. Kluwer Academic Publisher, Dordrecht, The Netherlands
15. 15. Simon AE, Bujarski JJ (1994) RNA-RNA recombination and evolution in virus infected plants. Annu Rev Phytopathol 32:337-362
16. 16. Nagy PD, Bujarski JJ (1993) Targeting the site of RNA-RNA recombination in brome mosaic virus with antisense sequences. Proc Natl Acad Sci USA 90:6390-6394
17. 17. Chamberlin MJ (1995) New models for the mechanism of transcription elongation and its regulation. Harvey Lect 88:1-21
18. 18. Nagy PD, Bujarski JJ (1995) Efficient system of homologous RNA recombination in brome mosaic virus: Sequence and structure requirements and accuracy of crossovers. J Virol 69:131-140
19. 19. Nagy PD, Bujarski JJ (1996) Homologous RNA recombination in brome mosaic virus: AU-rich sequences decrease the accuracy of crossovers. J Virol 70:415-426
20. 20. Nagy PD, Bujarski JJ (1996) submitted for publication
21. 21. Nagy PD, Dzianott A, Ahlquist P, Bujarski JJ (1995) Mutations in the helicase-like domain of protein 1a alter the sites of RNA-RNA recombination in brome mosaic virus. J Virol 69:2547-2556
22. 22. Nagy PD, Bujarski JJ (1994) unpublished
23. 23. Figlerowicz M, Nagy PD, Bujarski JJ (1996) submitted for publication
24. 24. Kao CC, Ahlquist P (1992) Identification of the domains required for direct interaction of the helicase-like and polymerase-like RNA replication proteins of brome mosaic virus. J Virol 66:7293-7302