-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0011542799
-
The Pfam protein families database
-
Bateman, A., E. Birney, L. Cerruti, R. Durbin, L. Etwiller, S. R. Eddy, S. Griffiths-Jones, K. L. Howe, M. Marshall, and E. L. Sonnhammer. 2002. The Pfam protein families database. Nucleic Acids Res. 30:276-280.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
3
-
-
0031743421
-
Profile hidden Markov models
-
Eddy, S. R. 1998. Profile hidden Markov models. Bioinformatics 14:755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
4
-
-
0035958746
-
The composite genome of the legume symbiont Sinorhizobium meliloti
-
Galibert, F., T. M. Finan, S. R. Long, A. Puhler, P. Abola, F. Ampe, F. Barloy-Hubler, M. J. Barnett, A. Becker, P. Boistard, G. Bothe, M. Boutry, L. Bowser, J. Buhrmester, E. Cadieu, D. Capela, P. Chain, A. Cowie, R. W. Davis, S. Dreano, N. A. Federspiel, R. F. Fisher, S. Gloux, T. Godrie, A. Goffeau, B. Golding, J. Gouzy, M. Gurjal, I. Hernandez-Lucas, A. Hong, L. Huizar, R. W. Hyman, T. Jonës, D. Kahn, M. L. Kahn, S. Kalman, D. H. Keating, E. Kiss, C. Komp, V. Lelaure, D. Masuy, C. Palm, M. C. Peck, T. M. Pohl, D. Portetelle, B. Purnelle, U. Ramsperger, R. Surzycki, P. Thebault, M. Vandenbol, F. J. Vorholter, S. Weidner, D. H. Wells, K. Wong, K. C. Yeh, and J. Batut. The composite genome of the legume symbiont Sinorhizobium meliloti. Science 293:668-672.
-
Science
, vol.293
, pp. 668-672
-
-
Galibert, F.1
Finan, T.M.2
Long, S.R.3
Puhler, A.4
Abola, P.5
Ampe, F.6
Barloy-Hubler, F.7
Barnett, M.J.8
Becker, A.9
Boistard, P.10
Bothe, G.11
Boutry, M.12
Bowser, L.13
Buhrmester, J.14
Cadieu, E.15
Capela, D.16
Chain, P.17
Cowie, A.18
Davis, R.W.19
Dreano, S.20
Federspiel, N.A.21
Fisher, R.F.22
Gloux, S.23
Godrie, T.24
Goffeau, A.25
Golding, B.26
Gouzy, J.27
Gurjal, M.28
Hernandez-Lucas, I.29
Hong, A.30
Huizar, L.31
Hyman, R.W.32
Jonës, T.33
Kahn, D.34
Kahn, M.L.35
Kalman, S.36
Keating, D.H.37
Kiss, E.38
Komp, C.39
Lelaure, V.40
Masuy, D.41
Palm, C.42
Peck, M.C.43
Pohl, T.M.44
Portetelle, D.45
Purnelle, B.46
Ramsperger, U.47
Surzycki, R.48
Thebault, P.49
Vandenbol, M.50
Vorholter, F.J.51
Weidner, S.52
Wells, D.H.53
Wong, K.54
Yeh, K.C.55
Batut, J.56
more..
-
5
-
-
0034877185
-
Oxygen signal transduction
-
Gilles-Gonzalez, M. A. 2001. Oxygen signal transduction. IUBMB Life 51:165-173.
-
(2001)
IUBMB Life
, vol.51
, pp. 165-173
-
-
Gilles-Gonzalez, M.A.1
-
6
-
-
0033277340
-
The histidine protein kinase superfamily
-
Grebe, T. W., and J. B. Stock. 1999. The histidine protein kinase superfamily. Adv. Microb. Physiol. 41:139-227.
-
(1999)
Adv. Microb. Physiol.
, vol.41
, pp. 139-227
-
-
Grebe, T.W.1
Stock, J.B.2
-
9
-
-
0037418282
-
The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties
-
Karniol, B., and R. D. Vierstra. 2003. The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties. Proc. Natl. Acad. Sci. USA 100:2807-2812.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 2807-2812
-
-
Karniol, B.1
Vierstra, R.D.2
-
10
-
-
0347854362
-
The HWE histidine kinases, a new family of two-component sensor kinases with potentially diverse roles in environmental signaling
-
Karniol, B., and R. D. Vierstra. 2004. The HWE histidine kinases, a new family of two-component sensor kinases with potentially diverse roles in environmental signaling. J. Bacteriol., 445-452.
-
(2004)
J. Bacteriol.
, pp. 445-452
-
-
Karniol, B.1
Vierstra, R.D.2
-
11
-
-
0036086410
-
Recent improvements to the SMART domain-based sequence annotation resource
-
Letunic, I., L. Goodstadt, N. J. Dickens, T. Doerks, J. Schultz, R. Mott, F. Ciccarelli, R. R. Copley, C. P. Ponting, and P. Bork. 2002. Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Res. 30:242-244.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 242-244
-
-
Letunic, I.1
Goodstadt, L.2
Dickens, N.J.3
Doerks, T.4
Schultz, J.5
Mott, R.6
Ciccarelli, F.7
Copley, R.R.8
Ponting, C.P.9
Bork, P.10
-
12
-
-
0037252683
-
CDD: A curated Entrez database of conserved domain alignments
-
Marchler-Bauer, A., J. B. Anderson, C. DeWeese-Scott, N. D. Fedorova, L. Y. Geer, S. He, D. I. Hurwitz, J. D. Jackson, A. R. Jacobs, C. J. Lanczycki, C. A. Liebert, C. Liu, T. Madej, G. H. Marchler, R. Mazumder, A. N. Nikolskaya, A. R. Panchenko, B. S. Rao, B. A. Shoemaker, V. Simonyan, J. S. Song, P. A. Thiessen, S. Vasudevan, Y. Wang, R. A. Yamashita, J. J. Yin, and S. H. Bryant. 2003. CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res. 31:383-387.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 383-387
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
DeWeese-Scott, C.3
Fedorova, N.D.4
Geer, L.Y.5
He, S.6
Hurwitz, D.I.7
Jackson, J.D.8
Jacobs, A.R.9
Lanczycki, C.J.10
Liebert, C.A.11
Liu, C.12
Madej, T.13
Marchler, G.H.14
Mazumder, R.15
Nikolskaya, A.N.16
Panchenko, A.R.17
Rao, B.S.18
Shoemaker, B.A.19
Simonyan, V.20
Song, J.S.21
Thiessen, P.A.22
Vasudevan, S.23
Wang, Y.24
Yamashita, R.A.25
Yin, J.J.26
Bryant, S.H.27
more..
-
13
-
-
0037251964
-
The InterPro database, 2003 brings increased coverage and new features
-
Mulder, N. J., R. Apweiler, T. K. Attwood, A. Bairoch, D. Barrell, A. Bateman, D. Binns, M. Biswas, P. Bradley, P. Bork, P. Bucher, R. R. Copley, E. Courcelle, U. Das, R. Durbin, L. Falquet, W. Fleischmann, S. Griffiths-Jones, D. Haft, N. Harte, N. Hulo, D. Kahn, A. Kanapin, M. Krestyaninova, R. Lopez, I. Letunic, D. Lonsdale, V. Silventoinen, S. E. Orchard, M. Pagni, D. Peyruc, C. P. Ponting, J. D. Selengut, F. Servant, C. J. Sigrist, R. Vaughan, and E. M. Zdobnov. 2003. The InterPro database, 2003 brings increased coverage and new features. Nucleic Acids Res. 31:315-318.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 315-318
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Barrell, D.5
Bateman, A.6
Binns, D.7
Biswas, M.8
Bradley, P.9
Bork, P.10
Bucher, P.11
Copley, R.R.12
Courcelle, E.13
Das, U.14
Durbin, R.15
Falquet, L.16
Fleischmann, W.17
Griffiths-Jones, S.18
Haft, D.19
Harte, N.20
Hulo, N.21
Kahn, D.22
Kanapin, A.23
Krestyaninova, M.24
Lopez, R.25
Letunic, I.26
Lonsdale, D.27
Silventoinen, V.28
Orchard, S.E.29
Pagni, M.30
Peyruc, D.31
Ponting, C.P.32
Selengut, J.D.33
Servant, F.34
Sigrist, C.J.35
Vaughan, R.36
Zdobnov, E.M.37
more..
-
14
-
-
0027056677
-
Communication modules in bacterial signaling proteins
-
Parkinson, J. S., and E. C. Kofoid. 1992. Communication modules in bacterial signaling proteins. Annu. Rev. Genet. 26:71-112.
-
(1992)
Annu. Rev. Genet.
, vol.26
, pp. 71-112
-
-
Parkinson, J.S.1
Kofoid, E.C.2
|