-
1
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
M.B. Eisen, P.T. Spellman, P.O. Brown, D. Botstein, Cluster analysis and display of genome-wide expression patterns, Proc. Natl Acad. Sci. USA 95 (1998) 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
2
-
-
0034710876
-
Coupled two-way clustering analysis of gene microarray data
-
G. Getz, E. Levine, E. Domany, Coupled two-way clustering analysis of gene microarray data, Proc. Natl Acad. Sci. USA 97 (2000) 12079-12084.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12079-12084
-
-
Getz, G.1
Levine, E.2
Domany, E.3
-
3
-
-
0035038203
-
DNA microarray analysis of complex biologic processes
-
M. Kurella, L.L. Hsiao, T. Yoshida, J.D. Randall, G. Chow, S.S. Sarang, R.V. Jensen, S.R. Gullans, DNA microarray analysis of complex biologic processes, J. Am. Soc. Nephrol. 12 (2001) 1072-1078.
-
(2001)
J. Am. Soc. Nephrol.
, vol.12
, pp. 1072-1078
-
-
Kurella, M.1
Hsiao, L.L.2
Yoshida, T.3
Randall, J.D.4
Chow, G.5
Sarang, S.S.6
Jensen, R.V.7
Gullans, S.R.8
-
5
-
-
0032849621
-
Knowledge discovery in gene-expression-microarray data: Mining the information output of the genome
-
G. Zweiger, Knowledge discovery in gene-expression-microarray data: mining the information output of the genome, Trends Biotechnol. 17 (1999) 429-436.
-
(1999)
Trends Biotechnol.
, vol.17
, pp. 429-436
-
-
Zweiger, G.1
-
6
-
-
0031159620
-
A new dimension for the human genome project: Towards comprehensive expression maps
-
T. Strachan, M. Abitbol, D. Davidson, J.S. Beckmann, A new dimension for the human genome project: towards comprehensive expression maps, Nat. Genet. 16 (1997) 126-132.
-
(1997)
Nat. Genet.
, vol.16
, pp. 126-132
-
-
Strachan, T.1
Abitbol, M.2
Davidson, D.3
Beckmann, J.S.4
-
7
-
-
0037255084
-
Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE
-
M. Safran, V. Chalifa-Caspi, O. Shmueli, T. Olender, M. Lapidot, N. Rosen, M. Shmoish, Y. Peter, G. Glusman, E. Feldmesser, A. Adato, I. Peter, M. Khen, T. Atarot, Y. Groner, D. Lancet, Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE, Nucleic Acids Res. 31 (2003) 142-146.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 142-146
-
-
Safran, M.1
Chalifa-Caspi, V.2
Shmueli, O.3
Olender, T.4
Lapidot, M.5
Rosen, N.6
Shmoish, M.7
Peter, Y.8
Glusman, G.9
Feldmesser, E.10
Adato, A.11
Peter, I.12
Khen, M.13
Atarot, T.14
Groner, Y.15
Lancet, D.16
-
8
-
-
0036823748
-
A web-accessible complete transcriptome of normal human and DMD muscle
-
M. Bakay, P. Zhao, J. Chen, E.P. Hoffman, A web-accessible complete transcriptome of normal human and DMD muscle, Neuromuscul. Disord. Suppl. 12 (1) (2002) S125-S141.
-
(2002)
Neuromuscul. Disord. Suppl.
, vol.12
, Issue.1
-
-
Bakay, M.1
Zhao, P.2
Chen, J.3
Hoffman, E.P.4
-
9
-
-
66749092547
-
A variable fold-change threshold determines significance for expression microarrays
-
T.J. Mariani, V. Budhraja, B.H. Mecham, C.C. Gu, M.A. Watson, Y. Sadovsky, A variable fold-change threshold determines significance for expression microarrays, FASEB J. (2002).
-
(2002)
FASEB J.
-
-
Mariani, T.J.1
Budhraja, V.2
Mecham, B.H.3
Gu, C.C.4
Watson, M.A.5
Sadovsky, Y.6
-
10
-
-
0036107889
-
Discovery of novel tumor markers of pancreatic cancer using global gene expression technology
-
C.A. Iacobuzio-Donahue, A. Maitra, G.L. Shen-Ong, T. van Heek, R. Ashfaq, R. Meyer, K. Walter, K. Berg, M.A. Hollingsworth, J.L. Cameron, C.J. Yeo, S.E. Kern, M. Goggins, R.H. Hruban, Discovery of novel tumor markers of pancreatic cancer using global gene expression technology, Am. J. Pathol. 160 (2002) 1239-1249.
-
(2002)
Am. J. Pathol.
, vol.160
, pp. 1239-1249
-
-
Iacobuzio-Donahue, C.A.1
Maitra, A.2
Shen-Ong, G.L.3
vanHeek, T.4
Ashfaq, R.5
Meyer, R.6
Walter, K.7
Berg, K.8
Hollingsworth, M.A.9
Cameron, J.L.10
Yeo, C.J.11
Kern, S.E.12
Goggins, M.13
Hruban, R.H.14
-
11
-
-
0037007048
-
Large-scale analysis of the human and mouse transcriptomes
-
A.I. Su, M.P. Cooke, K.A. Ching, Y. Hakak, J.R. Walker, T. Wiltshire, A.P. Orth, R.G. Vega, L.M. Sapinoso, A. Moqrich, A. Patapoutian, G.M. Hampton, P.G. Schultz, J.B. Hogenesch, Large-scale analysis of the human and mouse transcriptomes, Proc. Natl Acad. Sci. USA 99 (2002) 4465-4470.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4465-4470
-
-
Su, A.I.1
Cooke, M.P.2
Ching, K.A.3
Hakak, Y.4
Walker, J.R.5
Wiltshire, T.6
Orth, A.P.7
Vega, R.G.8
Sapinoso, L.M.9
Moqrich, A.10
Patapoutian, A.11
Hampton, G.M.12
Schultz, P.G.13
Hogenesch, J.B.14
-
12
-
-
0035998744
-
HugeIndex: A database with visualization tools for high-density oligonucleotide array data from normal human tissues
-
P.M. Haverty, Z. Weng, N.L. Best, K.R. Auerbach, L.L. Hsiao, R.V. Jensen, S.R. Gullans, HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues, Nucleic Acids Res. 30 (2002) 214-217.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 214-217
-
-
Haverty, P.M.1
Weng, Z.2
Best, N.L.3
Auerbach, K.R.4
Hsiao, L.L.5
Jensen, R.V.6
Gullans, S.R.7
-
13
-
-
0347749146
-
-
Affymetrix, Inc., GeneChip Expression Analysis
-
Affymetrix, Inc., GeneChip Expression Analysis, 2001.
-
(2001)
-
-
-
14
-
-
0035931072
-
A compendium of gene expression in normal human tissues
-
L.L. Hsiao, F. Dangond, T. Yoshida, R. Hong, R.V. Jensen, J. Misra, W. Dillon, K.F. Lee, K.E. Clark, P. Haverty, Z. Weng, G.L. Mutter, M.P. Frosch, M.E. Macdonald, E.L. Milford, C.P. Crum, R. Bueno, R.E. Pratt, M. Mahadevappa, J.A. Warrington, G. Stephanopoulos, S.R. Gullans, A compendium of gene expression in normal human tissues, Physiol. Genomics 7 (2001) 97-104.
-
(2001)
Physiol. Genomics
, vol.7
, pp. 97-104
-
-
Hsiao, L.L.1
Dangond, F.2
Yoshida, T.3
Hong, R.4
Jensen, R.V.5
Misra, J.6
Dillon, W.7
Lee, K.F.8
Clark, K.E.9
Haverty, P.10
Weng, Z.11
Mutter, G.L.12
Frosch, M.P.13
Macdonald, M.E.14
Milford, E.L.15
Crum, C.P.16
Bueno, R.17
Pratt, R.E.18
Mahadevappa, M.19
Warrington, J.A.20
Stephanopoulos, G.21
Gullans, S.R.22
more..
-
15
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
C. Li, W.H. Wong, Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection, Proc. Natl Acad. Sci. USA 98 (2001) 31-36.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
16
-
-
0242408258
-
-
R. Irizarry, B. Hobbs, F. Collin, Y.D. Beazer-Barclay, K.J. Antonellis, U. Scherf, T.P. Speed, Exploration, Normalization, and Summaries of High Density Oligonucleotide Array Probe Level Data, 2002.
-
(2002)
Exploration, Normalization, and Summaries of High Density Oligonucleotide Array Probe Level Data
-
-
Irizarry, R.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
17
-
-
12244298154
-
Statistical analysis of high-density oligonucleotide arrays: A multiplicative noise model
-
R. Sasik, E. Calvo, J. Corbeil, Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model, Bioinformatics 18 (2002) 1633-1640.
-
(2002)
Bioinformatics
, vol.18
, pp. 1633-1640
-
-
Sasik, R.1
Calvo, E.2
Corbeil, J.3
-
18
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
B.M. Bolstad, R.A. Irizarry, M. Astrand, T.P. Speed, A comparison of normalization methods for high density oligonucleotide array data based on variance and bias, Bioinformatics 19 (2003) 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
19
-
-
0036947892
-
Robust estimators for expression analysis
-
E. Hubbell, W.M. Liu, R. Mei, Robust estimators for expression analysis, Bioinformatics 18 (2002) 1585-1592.
-
(2002)
Bioinformatics
, vol.18
, pp. 1585-1592
-
-
Hubbell, E.1
Liu, W.M.2
Mei, R.3
-
20
-
-
12244313858
-
Analysis of high density expression microarrays with signed-rank call algorithms
-
W.M. Liu, R. Mei, X. Di, T.B. Ryder, E. Hubbell, S. Dee, T.A. Webster, C.A. Harrington, M.H. Ho, J. Baid, S.P. Smeekens, Analysis of high density expression microarrays with signed-rank call algorithms, Bioinformatics 18 (2002) 1593-1599.
-
(2002)
Bioinformatics
, vol.18
, pp. 1593-1599
-
-
Liu, W.M.1
Mei, R.2
Di, X.3
Ryder, T.B.4
Hubbell, E.5
Dee, S.6
Webster, T.A.7
Harrington, C.A.8
Ho, M.H.9
Baid, J.10
Smeekens, S.P.11
-
21
-
-
0021810987
-
Human serum amyloid P component. cDNA isolation, complete sequence of pre-serum amyloid P component, and localization of the gene to chromosome 1
-
E.C. Mantzouranis, S.B. Dowton, A.S. Whitehead, M.D. Edge, G.A. Bruns, H.R. Colten, Human serum amyloid P component. cDNA isolation, complete sequence of pre-serum amyloid P component, and localization of the gene to chromosome 1, J. Biol. Chem. 260 (1985) 7752-7756.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 7752-7756
-
-
Mantzouranis, E.C.1
Dowton, S.B.2
Whitehead, A.S.3
Edge, M.D.4
Bruns, G.A.5
Colten, H.R.6
-
22
-
-
0034616930
-
Functional discovery via a compendium of expression profiles
-
T.R. Hughes, M.J, Marton, A.R. Jones, C.J. Roberts, R. Stoughton, C.D. Armour, H.A. Bennett, E. Coffey, H. Dai, Y.D. He, M.J. Kidd, A.M. King, M.R. Meyer, D. Slade, P.Y. Lum, S.B. Stepaniants, D.D. Shoemaker, D. Gachotte, K. Chakraburtty, J. Simon, M. Bard, S.H. Friend, Functional discovery via a compendium of expression profiles, Cell 102 (2000) 109-126.
-
(2000)
Cell
, vol.102
, pp. 109-126
-
-
Hughes, T.R.1
Marton, M.J.2
Jones, A.R.3
Roberts, C.J.4
Stoughton, R.5
Armour, C.D.6
Bennett, H.A.7
Coffey, E.8
Dai, H.9
He, Y.D.10
Kidd, M.J.11
King, A.M.12
Meyer, M.R.13
Slade, D.14
Lum, P.Y.15
Stepaniants, S.B.16
Shoemaker, D.D.17
Gachotte, D.18
Chakraburtty, K.19
Simon, J.20
Bard, M.21
Friend, S.H.22
more..
-
23
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
J.L. DeRisi, V.R. Iyer, P.O. Brown, Exploring the metabolic and genetic control of gene expression on a genomic scale, Science 278 (1997) 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
24
-
-
2942576225
-
Sources of variability and effect of experimental approach on expression profiling data interpretation
-
M. Bakay, Y.W. Chen, R. Borup, P. Zhao, K. Nagaraju, E.P. Hoffman, Sources of variability and effect of experimental approach on expression profiling data interpretation, BMC Bioinformatics 3 (2002) 4.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 4
-
-
Bakay, M.1
Chen, Y.W.2
Borup, R.3
Zhao, P.4
Nagaraju, K.5
Hoffman, E.P.6
-
25
-
-
0036399459
-
Identifying and quantifying sources of variation in microarray data using high-density cDNA membrane arrays
-
K.R. Coombes, W.E. Highsmith, T.A. Krogmann, K.A. Baggerly, D.N. Stivers, L.V. Abruzzo, Identifying and quantifying sources of variation in microarray data using high-density cDNA membrane arrays, J. Comput. Biol. 9 (2002) 655-669.
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 655-669
-
-
Coombes, K.R.1
Highsmith, W.E.2
Krogmann, T.A.3
Baggerly, K.A.4
Stivers, D.N.5
Abruzzo, L.V.6
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