cDNAs for functional genomics and proteomics: The German Consortium

Comptes Rendus - Biologies

Volumn 326, Issue 10-11, 2003, Pages 1003-1009

  Wiemann, Stefan ^a   Mehrle, Alexander ^a   Bechtel, Stephanie ^a   Wellenreuther, Ruth ^a   Pepperkok, Rainer ^b   Poustka, Annemarie ^a  

^a GERMAN CANCER RESEARCH CENTER DKFZ   (Germany)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

Cellular assay; Full length cDNA; Functional genomics; Protein expression; Proteomics

Indexed keywords

COMPLEMENTARY DNA; GREEN FLUORESCENT PROTEIN; HYBRID PROTEIN;

BIOASSAY; DNA; GENOME;

ALGORITHM; ARTICLE; CELL DEATH; CELL GROWTH; CELLULAR DISTRIBUTION; CLASSIFICATION; COMPUTER SYSTEM; CONTROLLED STUDY; DNA LIBRARY; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENE ACTIVITY; GENE FUNCTION; GENETIC CODE; GENOMICS; GERMANY; HUMAN; HUMAN CELL; INFORMATION PROCESSING; MATERIALS HANDLING; MOLECULAR CLONING; OPEN READING FRAME; POLYMERASE CHAIN REACTION; PROTEIN FUNCTION; PROTEIN TRANSPORT; PROTEOMICS; ROBOTICS; SEQUENCE DATABASE; SEQUENCE TAGGED SITE;

EID: 0347513366     PISSN: 16310691     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.crvi.2003.09.036     Document Type: Article

References (25)

1. International Human Genome Sequencing Consortium, Initial sequencing and analysis of the human genome, Nature 409 (2001) 860-921.
2. J.C. Venter, M.D. Adams, E.W. Myers, P.W. Li, R.J. Mural, G.G. Sutton, H.O. Smith, M. Yandell, C.A. Evans, R.A. Holt, Sequence of the human genome, Science 291 (2001) 1304-1351.
3. S. Wiemann, B. Weil, R. Wellenreuther, J. Gassenhuber, S. Glassl, W. Ansorge, M. Bocher, H. Blocker, S. Bauersachs, H. Blum, J. Lauber, A. Dusterhoft, A. Beyer, K. Kohrer, N. Strack, H.W. Mewes, B. Ottenwalder, B. Obermaier, J. Tampe, D. Heubner, R. Wambutt, B. Korn, M. Klein, A. Poustka, Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs, Genome Res. 11 (2001) 422-435.
4. A. Abbott, Free access to cDNA provides impetus for gene function work, Nature 410 (2001) 289-290.
5. E. Pennisi, So many choices, so little money, Science 294 (2001) 82-85.
6. J.C. Simpson, R. Wellenreuther, A. Poustka, R. Pepperkok, S. Wiemann, Systematic subcellular localization of novel proteins identified by large scale cDNA sequencing, EMBO Rep. 1 (2000) 287-292.
7. J.H. Heaton, W.M. Dlakic, M. Dlakic, T.D. Gelehrter, Identification and cDNA cloning of a novel RNA-binding protein that interacts with the cyclic nucleotide responsive sequence in the type-1 plasminogen activator inhibitor mRNA, J. Biol. Chem. 276 (2001) 3341-3347.
8. V. Derrien, C. Couillault, M. Franco, S. Martineau, P. Montcourrier, R. Houlgatte, P. Chavrier, A conserved C-terminal domain of EFA6-family ARF6-guanine nucleotide exchange factors induces lengthening of microvilli-like membrane protrusions, J. Cell Sci. 115 (2002) 2867-2879.
9. M.P. Scott, F. Zappacosta, E.Y. Kim, R.S. Annan, W.T. Miller, Identification of novel SH3 domain ligands for the Src family kinase Hck. Wiskott-Aldrich syndrome protein (WASP), WASP-interacting protein (WIP), and ELMO1, J. Biol. Chem. 277 (2002) 28238-28246.
10. R. Pepperkok, J. Simpson, S. Wiemann, Being in the right location at the right time, Genome Biol. 2 (2001) 1024.
11. J.C. Simpson, V.E. Neubrand, S. Wiemann, R. Pepperkok, Illuminating the human genome, Histochem. Cell Biol. 115 (2001) 23-29.
12. H.W. Mewes, D. Frishman, U. Guldener, G. Mannhaupt, K. Mayer, M. Mokrejs, B. Morgenstern, M. Munsterkotter, S. Rudd, B. Weil, MIPS: a database for genomes and protein sequences, Nucleic Acids Res. 30 (2002) 31-34.
13. G. Stoesser, W. Baker, A. van den Broek, M. Garcia-Pastor, C. Kanz, T. Kulikova, R. Leinonen, Q. Lin, V. Lombard, R. Lopez, R. Mancuso, F. Nardone, P. Stoehr, M.A. Tuli, K. Tzouvara, R. Vaughan, The EMBL Nucleotide Sequence Database: major new developments, Nucleic Acids Res. 31 (2003) 17-22.
14. J.L. Hartley, G.F. Temple, M.A. Brasch, DNA cloning using in vitro site-specific recombination, Genome Res. 10 (2000) 1788-1795.
15. S. Haas, M. Vingron, A. Poustka, S. Wiemann, Primer design for large scale sequencing, Nucleic Acids Res. 26 (1998) 3006-3012.
16. M. Chalfie, Y. Tu, G. Euskirchen, W.W. Ward, D.C. Prasher, Green fluorescent protein as a marker for gene expression, Science 263 (1994) 802-805.
17. T.E. Kreis, Microinjected antibodies against the cytoplasmic domain of vesicular stomatitis virus glycoprotein block its transport to the cell surface, EMBO J. 5 (1986) 931-941.
18. R. Pepperkok, P. Lorenz, W. Ansorge, W. Pyerin, Casein kinase II is required for transition of G0/G1, early G1, and G1/S phases of the cell cycle, J. Biol. Chem. 269 (1994) 6986-6991.
19. D. Karolchik, R. Baertsch, M. Diekhans, T.S. Furey, A. Hinrichs, Y.T. Lu, K.M. Roskin, M. Schwartz, C.W. Sugnet, D.J. Thomas, R.J. Weber, D. Haussler, W.J. Kent, The UCSC Genome Browser Database, Nucleic Acids Res. 31 (2003) 51-54.
20. M. Clamp, D. Andrews, D. Barker, P. Bevan, G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, T. Hubbard, A. Kasprzyk, D. Keefe, H. Lehvaslaiho, V. Iyer, C. Melsopp, E. Mongin, R. Pettett, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, E. Birney, Ensembl 2002: accommodating comparative genomics, Nucleic Acids Res. 31 (2003) 38-42.
21. M. Safran, V. Chalifa-Caspi, O. Shmueli, T. Olender, M. Lapidot, N. Rosen, M. Shmoish, Y. Peter, G. Glusman, E. Feldmesser, A. Adato, I. Peter, M. Khen, T. Atarot, Y. Groner, D. Lancet, Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE, Nucleic Acids Res. 31 (2003) 142-146.
22. B. Boeckmann, A. Bairoch, R. Apweiler, M.-C. Blatter, A. Estreicher, E. Gasteiger, M.J. Martin, K. Michoud, C. O'Donovan, I. Phan, S. Pilbout, M. Schneider, The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003, Nucleic Acids Res. 31 (2003) 365-370.
23. J. Ziauddin, D.M. Sabatini, Microarrays of cells expressing defined cDNAs, Nature 411 (2001) 107-110.
24. J.M. Boer, W.K. Huber, H. Sultmann, F. Wilmer, A. von Heydebreck, S. Haas, B. Korn, B. Gunawan, A. Vente, L. Fuzesi, M. Vingron, A. Poustka, Identification and classification of differentially expressed genes in renal cell carcinoma by expression profiling on a global human 31 500-element cDNA array, Genome Res. 11 (2001) 1861-1870.
25. W. Huber, A. Von Heydebreck, H. Sultmann, A. Poustka, M. Vingron, Variance stabilization applied to microarray data calibration and to the quantification of differential expression, Bioinformatics (Suppl.) 18 (1) (2002) S96-S104.