Ensembl 2002: Accommodating comparative genomics

Nucleic Acids Research

Volumn 31, Issue 1, 2003, Pages 38-42

  Clamp, M ^b   Andrews, D ^b   Barker, D ^b   Bevan, P ^b   Cameron, G ^a   Chen, Y ^a   Clark, L ^b   Cox, T ^b   Cuff, J ^b   Curwen, V ^b   Down, T ^b   Durbin, R ^b   Eyras, E ^b   Gilbert, J ^b   Hammond, M ^a   Hubbard, T ^b   Kasprzyk, A ^a   Keefe, D ^a   Lehvaslaiho, H ^a   Iyer, V ^b   Melsopp, C ^a   Mongin, E ^a   Pettett, R ^b   Potter, S ^b   Rust, A ^a   Schmidt, E ^a   Searle, S ^b   Slater, G ^a   Smith, J ^b   Spooner, W ^b   Stabenau, A ^a   Stalker, J ^b   Stupka, E ^a   Ureta Vidal, A ^a   Vastrik, I ^a   Birney, E ^a   more..

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATION; BIOINFORMATICS; COMPARATIVE GENE MAPPING; COMPUTER PROGRAM; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; HUMAN; INFORMATION PROCESSING; INFORMATION SYSTEM; INTERNET; MEDICAL INFORMATION SYSTEM; MOLECULAR BIOLOGY; MOUSE; NONHUMAN; PRIORITY JOURNAL; REVIEW; SEQUENCE ANALYSIS; SEQUENCE DATABASE; VERTEBRATE;

ANIMALS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; GENOME, HUMAN; GENOMICS; HUMANS; INTERNET; MICE; SOFTWARE; SYNTENY;

VERTEBRATA;

EID: 0037246585     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg083     Document Type: Review

References (14)

1. Aparicio,S., Chapman,J., Stupka,E., Putnam,N., Chia,J.M., Dehal,P., Christoffels,A., Rash,S., Hoon,S., Smit,A. et al. (2002) Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science, 297, 1301-1310.
2. Hubbard,T., Barker,D., Birney,E., Cameron,G., Chen,Y., Clark,L., Cox,T., Cuff,J., Curwen,V., Down,T. et al. (2002) The Ensembl genome database project. Nucleic Acids Res., 30, 38-41.
3. Birney,E., Clamp,M.E. and Hubbard,T.J. (2002) Databases and tools for browsing genomes. Annu. Rev. Genome. Hum. Genet., 3, 293-310.
4. Rust,A.G., Mongin,E. and Birney,E. (2002) Genome Annotation Techniques: New approaches and challenges. Drug Discov. Today, 7, S70-S76.
5. Tatusov,R.L., Koonin,E.V. and Lipman,D.J. (1997) A genomic perspective on protein families. Science, 278, 631-637.
6. Deloukas,P., Matthews,L.H., Ashurst,J., Burton,J., Gilbert,J.G., Jones,M., Stavrides,G., Almeida,J.P., Babbage,A.K., Bagguley,C.L. et al. (2001) The DNA sequence and comparative analysis of human chromosome 20. Nature, 414, 865-871.
7. Dunham,I., Shimizu,N., Roe,B.A., Chissoe,S., Hunt,A.R., Collins,J.E., Bruskiewich,R., Beare,D.M., Clamp,M., Smink,L.J. et al. (1999) The DNA sequence of human chromosome 22. Nature, 402, 489-495.
8. Down,T.A. and Hubbard,T.J. (2002) Computational detection and location of transcription start sites in mammalian genomic DNA. Genome Res., 12, 458-461.
9. The Gene Ontology Consortium (2000) Gene Ontology: tool for the unification of biology. Nature Genet., 25, 25-29.
10. Dawson,E., Abecasis,G.R., Bumpstead,S., Chen,Y., Hunt,S., Beare,D.M., Pabial,J., Dibling,T., Tinsley,E., Kirby,S. et al. (2002) A first-generation linkage disequilibrium map of human chromosome 22. Nature, 418, 544-548.
11. Hubbard,T. and Birney,E. (2000) Open annotation offers a democratic solution to genome sequencing. Nature, 403, 825.
12. Dowell,R.D., Jokerst,R.M., Day,A., Eddy,S.R. and Stein,L. (2001) The Distributed Annotation System. BMC Bioinformatics, 2, 7.
13. Burge,C. and Karlin,S. (1997) Prediction of complete gene structures in human genomic DNA. J. Mol. Biol., 268, 78-94.
14. Holt,R.A., Subramanian,G.M., Halpern,A., Sutton,G.G., Charlab,R., Nusskern,D.R., Wincker,P., Clark,A.G., Ribeiro,J.M., Wides,R. et al. (2002) The genome sequence of the malaria mosquito Anopheles gambiae. Science, 298, 129-149.