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Volumn 19, Issue 18, 2003, Pages 2359-2368

Efficient estimation of emission probabilities in profile hidden Markov models

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; PROTEIN;

EID: 0347513228     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg328     Document Type: Article
Times cited : (7)

References (22)
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  • 8
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    • Assignment of homology to genome sequences using library of hidden Markov models that represent all proteins of known structure
    • Gough,J., Karplus,K., Hughey,R. and Chothia,C. (2001) Assignment of homology to genome sequences using library of hidden Markov models that represent all proteins of known structure. J. Mol. Biol., 313, 903-919.
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  • 11
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    • Regularizers for Estimating Distributions of Amino Acids from Small Samples
    • Technical Report UCSC-CRL-95-11, University of California, Santa Cruz
    • Karplus,K. (1995) Regularizers for Estimating Distributions of Amino Acids from Small Samples. Technical Report UCSC-CRL-95-11, University of California, Santa Cruz.
    • (1995)
    • Karplus, K.1
  • 12
    • 0032438987 scopus 로고    scopus 로고
    • Hidden Markov models for detecting remote protein homologies
    • Karplus,K., Barrett,C. and Hughey,R. (1998) Hidden Markov models for detecting remote protein homologies. Bioinformatics, 14, 846-856.
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    • Karplus, K.1    Barrett, C.2    Hughey, R.3
  • 14
    • 0028181441 scopus 로고
    • Hidden Markov models in computational biology: Applications to protein modeling
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  • 16
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    • A comparison of profile hidden Markov model procedures for remote homology detection
    • Madera,M. and Gough,J. (2002) A comparison of profile hidden Markov model procedures for remote homology detection. Nucleic Acids Res., 30, 4321-4328.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 4321-4328
    • Madera, M.1    Gough, J.2
  • 17
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin,A.G., Brenner,S.E., Hubbard,T. and Chothia, C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540
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    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 18
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    • Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods
    • Park,J., Karplus,K., Barrett,C., Hughey,R., Haussler,D., Hubbard,T. and Chothia,C. (1998) Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. J. Mol. Biol., 284, 1201-1210.
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  • 21
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    • Detection of conserved segments in proteins: Iterative scanning of sequence databases with alignment blocks
    • Tatusov,R.L., Altschul,S.F. and Koonin,E.V. (1994) Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks. Proc. Natl Acad. Sci. USA, 91, 12091-12095.
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.