-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0030889183
-
Scoring hidden Markov models
-
Barrett,C., Hughey,R. and Karplus,K. (1997) Scoring hidden Markov models. Comput. Appl. Biosci., 13, 191-199.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 191-199
-
-
Barrett, C.1
Hughey, R.2
Karplus, K.3
-
3
-
-
0011542799
-
The Pfam protein families database
-
Bateman,A., Birney,E., Cerruti,L., Durbin,R., Etwiller,L., Eddy,S.R., Griffiths-Jones,S., Howe,K.L., Marshall,M. and Sonnhammer,E.L.L. (2002) The Pfam protein families database. Nucleic Acids Res., 30, 276-280.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.L.10
-
4
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann,B., Bairoch,A., Apweiler,R., Blatter,M.-C., Estreicher,A., Gasteiger,E., Martin,M.J., Michoud,K., O'Donovan,C., Phan,I., et al. (2003) The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res., 31, 365-370.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.-C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
-
5
-
-
0036089049
-
ASTRAL compendium enhancements
-
Chandonia,J.M., Walker,N.S., Lo Conte,L., Koehl,P., Levitt,M. and Brenner,S.E. (2002) ASTRAL compendium enhancements. Nucleic Acids Res., 30, 260-263.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 260-263
-
-
Chandonia, J.M.1
Walker, N.S.2
Lo Conte, L.3
Koehl, P.4
Levitt, M.5
Brenner, S.E.6
-
6
-
-
0003516147
-
-
Cambridge Univeristy Press, Cambridge
-
Durbin,R., Eddy,S., Krogh,A. and Mitchison,G. (1998) Biological Sequence Analysis; Probabilistic Models of Proteins and Nucleic Acids. Cambridge Univeristy Press, Cambridge.
-
(1998)
Biological Sequence Analysis; Probabilistic Models of Proteins and Nucleic Acids
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchison, G.4
-
7
-
-
0031743421
-
Profile hidden Markov models
-
Eddy,S.R. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
8
-
-
0035798406
-
Assignment of homology to genome sequences using library of hidden Markov models that represent all proteins of known structure
-
Gough,J., Karplus,K., Hughey,R. and Chothia,C. (2001) Assignment of homology to genome sequences using library of hidden Markov models that represent all proteins of known structure. J. Mol. Biol., 313, 903-919.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 903-919
-
-
Gough, J.1
Karplus, K.2
Hughey, R.3
Chothia, C.4
-
9
-
-
0023375315
-
Profile analysis: Detection of distantly related proteins
-
Gribskov,M., McLachlan,A.D. and Eisenberg,D. (1987) Profile analysis: detection of distantly related proteins. Proc. Natl Acad. Sci. USA, 84, 4355-4358.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 4355-4358
-
-
Gribskov, M.1
McLachlan, A.D.2
Eisenberg, D.3
-
10
-
-
0025341905
-
Profile analysis
-
Gribskov,M., Luthy,R. and Eisenberg,D. (1990) Profile analysis. Methods Enzymol., 183, 146-159.
-
(1990)
Methods Enzymol.
, vol.183
, pp. 146-159
-
-
Gribskov, M.1
Luthy, R.2
Eisenberg, D.3
-
11
-
-
0004121963
-
Regularizers for Estimating Distributions of Amino Acids from Small Samples
-
Technical Report UCSC-CRL-95-11, University of California, Santa Cruz
-
Karplus,K. (1995) Regularizers for Estimating Distributions of Amino Acids from Small Samples. Technical Report UCSC-CRL-95-11, University of California, Santa Cruz.
-
(1995)
-
-
Karplus, K.1
-
12
-
-
0032438987
-
Hidden Markov models for detecting remote protein homologies
-
Karplus,K., Barrett,C. and Hughey,R. (1998) Hidden Markov models for detecting remote protein homologies. Bioinformatics, 14, 846-856.
-
(1998)
Bioinformatics
, vol.14
, pp. 846-856
-
-
Karplus, K.1
Barrett, C.2
Hughey, R.3
-
14
-
-
0028181441
-
Hidden Markov models in computational biology: Applications to protein modeling
-
Krogh,A., Brown,M., Mian,I.S., Sjölander,K. and Haussler,D. (1994) Hidden Markov models in computational biology: applications to protein modeling. J. Mol. Biol., 235, 1501-1531.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.S.3
Sjölander, K.4
Haussler, D.5
-
16
-
-
0036796379
-
A comparison of profile hidden Markov model procedures for remote homology detection
-
Madera,M. and Gough,J. (2002) A comparison of profile hidden Markov model procedures for remote homology detection. Nucleic Acids Res., 30, 4321-4328.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 4321-4328
-
-
Madera, M.1
Gough, J.2
-
17
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin,A.G., Brenner,S.E., Hubbard,T. and Chothia, C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
18
-
-
0032509105
-
Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods
-
Park,J., Karplus,K., Barrett,C., Hughey,R., Haussler,D., Hubbard,T. and Chothia,C. (1998) Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. J. Mol. Biol., 284, 1201-1210.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 1201-1210
-
-
Park, J.1
Karplus, K.2
Barrett, C.3
Hughey, R.4
Haussler, D.5
Hubbard, T.6
Chothia, C.7
-
20
-
-
0029906607
-
Dirichlet mixtures: A method for improving detection of weak but significant sequence homology
-
Sjölander,K., Karplus,K., Brown,M., Hughey,R., Krogh,A., Mian,I.S. and Haussler,D. (1996) Dirichlet mixtures: a method for improving detection of weak but significant sequence homology. Comput. Appl. Biosci., 12, 327-345.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 327-345
-
-
Sjölander, K.1
Karplus, K.2
Brown, M.3
Hughey, R.4
Krogh, A.5
Mian, I.S.6
Haussler, D.7
-
21
-
-
0028091659
-
Detection of conserved segments in proteins: Iterative scanning of sequence databases with alignment blocks
-
Tatusov,R.L., Altschul,S.F. and Koonin,E.V. (1994) Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks. Proc. Natl Acad. Sci. USA, 91, 12091-12095.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 12091-12095
-
-
Tatusov, R.L.1
Altschul, S.F.2
Koonin, E.V.3
-
22
-
-
0036681416
-
Scoring residue conservation
-
Valdar,W.S.J. (2002) Scoring residue conservation. Proteins, 48, 227-241.
-
(2002)
Proteins
, vol.48
, pp. 227-241
-
-
Valdar, W.S.J.1
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