Breaking down taxonomic barriers in polyploidy research

Trends in Plant Science

Volumn 8, Issue 12, 2003, Pages 582-590

  Mable, Barbara K ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA; EUKARYOTA;

EID: 0346936154     PISSN: 13601385     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tplants.2003.10.006     Document Type: Review

References (105)

1. Lynch, M. (2002) Genomics. Gene duplication and evolution. Science 297, 945-947
2. Wendel, J.F. (2000) Genome evolution in polyploids. Plant Mol. Biol. 42, 225-249
3. Holland, P.W. (2003) More genes in vertebrates? J. Struct. Fund. Genomics 3, 75-84
4. Page, R.D. and Cotton, J.A. (2002) Vertebrate phylogenomics: reconciled trees and gene duplications. Pac. Symp. Biocomput., 536-547
5. Osborn, T.C. et al. (2003) Understanding mechanisms of novel gene expression in polyploids. Trends Genet. 19, 141-147
6. Adams, K. et al. (2003) Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc. Natl. Acad. Sci. U. S. A. 100, 4649-4654
7. Ramsey, J. and Schemske, D.W. (1998) Pathways, mechanisms, and rates of polyploid formation in flowering plants. Annu. Rev. Ecol. Syst. 29, 467-501
8. Soltis, P.S. and Soltis, D.E. (2000) The role of genetic and genomic attributes in the success of polyploids. Proc. Natl. Acad. Sci. U. S. A. 97, 7051-7057
9. Otto, S.P. and Whitton, J. (2000) Polyploidy: incidence and evolution. Annu. Rev. Genet. 34, 401-437
10. Taylor, J.S. et al. (2001) Genome duplications, divergent resolution and speciation. Trends Genet. 17, 299-301
11. Ramsey, J. and Schemske, D.W. (2002) Neopolyploidy in flowering plants. Annu. Rev. Ecol. Syst. 33, 589-639
12. Ohno, S. (1999) Gene duplication and the uniqueness of vertebrate genomes circa 1970-1999. Semin. Cell Dev. Biol. 10, 517-522
13. Escriva, H. et al. (2002) Analysis of lamprey and hagfish genes reveals a complex history of gene duplications during early vertebrate evolution. Mol. Biol. Evol. 19, 1440-1450
14. Taylor, J. et al. (2003) Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Res. 13, 382-390
15. Blanc, G. et al. (2003) A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res. 13, 137-144
16. Langkjaer, R. et al. (2003) Yeast genome duplication was followed by asynchronous differentiation of duplicated genes. Nature 421, 848-852
17. Orr, H.A. (1990) 'Why polyploidy is rarer in animals than in plants' revisited. Am. Nat. 6, 759-770
18. Bogart, J.P. (1980) Evolutionary implications of polyploidy in amphibians and reptiles. In Polyploidy: Biological Relevance (Lewis, W.H., ed.), pp. 341-378, Plenum Press
19. Schultz, R.J. (1980) Role of polyploidy in the evolution of fishes. In Polyploidy: Biological Relevance (Lewis, W.H., ed.), pp. 341-378, Plenum Press
20. Ferris, S.D. and Whitt, G.S. (1977) Loss of duplicate gene expression after polyploidization. Nature 265, 258-260
21. Kobel, H.R. and Du Pasquier, L. (1986) Genetics of polyploid Xenopus. Trends Genet. 2, 310-315
22. Roose, M.L. and Gottlieb, L.D. (1976) Genetic and biochemical consequences of polyploidy in Tragopogon. Evolution 30, 818-830
23. Madlung, A. et al. (2002) Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids. Plant Physiol. 129, 733-746
24. Winge, Ö. (1917) The chromosomes. Their numbers and general importance. C. R. Trav. Lab. Carlsberg 13, 131-175
25. Husband, B.C. and Schemske, D.W. (2000) Ecological mechanisms of reproductive isolation between diploid and tetraploid Chamerion angustifolium. J. Ecol. 88, 689-701
26. Becerra Lopez-Lavalle, L. and Orjeda, G. (2002) Occurrence and cytological mechanism of 2n pollen formation in a tetraploid accession of Ipomoea batatas (sweet potato). J. Hered. 93, 185-192
27. Carputo, D. et al. (2003) The role of 2n gametes and endosperm balance number in the origin and evolution of polyploids in the tuber-bearing solanums. Genetics 163, 287-294
28. Barcaccia, G. et al. (2000) Inheritance and mapping of 2n-egg production in diploid alfalfa. Genome 43, 528-537
29. Lowcock, L.A. and Licht, L.E. (1990) Natural autotriploidy in salamanders. Genome 33, 674-678
30. Burton, T.L. and Husband, B.C. (2000) Fitness differences among diploids, triploids, and their triploid progeny in Chamerion angustifolium: mechanisms of inviability and implications for polyploid evolution. Evol. Int. J. Org. Evol. 54, 1182-1191
31. Stöck, M. et al. (2002) A bisexually reproducing all-triploid vertebrate. Nat. Genet. 30, 325-328
32. Lamatsch, D. et al. (2000) Unusual triploid males in a microchromosome-carrying clone of the Amazon molly, Poecilia formosa. Cytogenet. Cell Genet. 91, 148-156
33. Rebollo, E. and Arana, P. (2001) Active role of lagging chromosomes in spindle collapse as revealed by live phase contrast and tubulin immunostaining in grasshopper spermatocytes. Chromosoma 110, 292-304
34. Castro, A. et al. (2003) Involvement of Aurora A kinase during meiosis I-II transition in Xenopus oocytes. J. Biol. Chem. 278, 2236-2241
35. Bogart, J.P. (2003) Genetics and systematics of hybrid species. In Reproductive Biology and Phylogeny of Urodela (Vol. 1) (Sever, D.M., ed.), pp. 109-134, Science Publishers
36. Alves, M. J. et al. (2001) Evolution in action through hybridisation and polyploidy in Iberian freshwater fish: a genetic review. Genetica 111, 375-385
37. van Baarlen, P. et al. (2000) Meiotic recombination in sexual diploid and apomictic triploid dandelions (Taraxacum officinale L.). Genome 43, 827-835
38. Kollmann, J. et al. (2000) Evidence of sexuality in European Rubus (Rosaceae) species based on AFLP and allozyme analysis. Am. J. Bot. 87, 1592-1598
39. Nakayama, Y. et al. (2002) A population dynamic model for facultative agamosperms. J. Theor. Biol. 215, 253-262
40. Soltis, D.E. and Soltis, P.S. (1999) Polyploidy: recurrent formation and genome evolution. Trends Ecol. Evol. 14, 348-352
41. Levin, D.A. (1975) Minority cytotype exclusion in local plant populations. Taxon 24, 35-43
42. Husband, B. (2000) Constraints on polyploid evolution: a test of the minority cytotype exclusion principle. Proc. R. Soc. London B. Biol. Sci. 267, 217-223
43. Bever, J.D. and Felber, F. (1998) The theoretical population genetics of autopolyploidy. Oxford Surv. Evol. Biol. 8, 185-217
44. Rodríguez, D.J. (1996) A model for the establishment of polyploidy in plants. Am. Nat. 147, 33-46
45. Husband, B.C. and Schemske, D.W. (1998) Cytotype distribution at a diploid-tetraploid contact zone in Chamerion (Epilobium) angustifolium (Onagraceae). Am. J. Bot. 85, 1688-1694
46. Husband, B.C. et al. (2002) Pollen competition as a unilateral reproductive barrier between sympatric diploid and tetraploid Chamerion angustifolium. Proc. R. Soc. London Ser. B 269, 2571-2656
47. Castellano, S. et al. (1998) Morphometrical and acoustical comparisons between diploid and tetraploid green toads. Biol. J. Linn. Soc. 63, 257-281
48. Keller, M.J. and Gerhardt, H.C. (2001) Polyploidy alters advertisement call structure in grey treefrogs. Proc. R. Soc. London B. Biol. Sci. 268, 341-345
49. Landry, C. et al. (2001) 'Good genes as heterozygosity': the major histocompatibility complex and mate choice in Atlantic salmon (Salmo salar). Proc. R. Soc. London B. Biol. Sci. 268, 1279-1285
50. Sammut, B. et al. (2002) The fate of duplicated major histocompatibility complex class Ia genes in a dodecaploid amphibian, Xenopus ruwenzoriensis. Eur. J. Immunol. 32, 2698-2709
51. Schierup, M.H. et al. (2001) Recombination, balancing selection and phylogenies in MHC and self-incompatibility genes. Genetics 159, 1833-1844
52. Miller, J.S. and Venable, D.L. (2000) Polyploidy and the evolution of gender dimorphism in plants. Science 289, 2335-2338
53. Stebbins, G.L. (1950) Variation and Evolution in Plants, Columbia University Press
54. Shaked, H. et al. (2001) Sequence elimination and cytosine methylation are rapid and reproduciblel responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13, 1749-1759
55. Ozkan, H. et al. (2001) Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group. Plant Cell 13, 1735-1747
56. Petit, C. et al. (1999) Evolutionary consequences of diploid-polyploid hybrid zones in wild species. Trends Ecol. Evol. 14, 306-311
57. Levin, D.A. (2003) The cytoplasmic factor in plant speciation. Syst. Bot. 28, 5-11
58. Mable, B.K. and Bogart, J.P. (1995) Genetic investigation of interspecific hybrids between tetraploid and diploid species of treefrogs, genus Hyla. J. Hered. 86, 432-440
59. Carmona, J. et al. (1997) Hybridogenetic reproduction and maternal ancestry of polyploid Iberian fish: the Tropidophoxinellus alburnoides complex. Genetics 146, 983-993
60. Guex, G-D. et al. (2002) Deleterious alleles and differential viability in progeny of natural hemiclonal frogs. Evol. Int. J. Org. Evol. 56, 1036-1044
61. Martinez-Perez, E. et al. (2001) The Ph1 locus is needed to ensure specific somatic and meiotic centromere association. Nature 411, 204-207
62. Stanyon, R. et al. (2001) Reciprocal chromosome painting between a New World primate, the woolly monkey, and humans. Chromosome Res. 9, 97-106
63. Houen, A. et al. (2001) Microdissection and chromosome painting of plant B chromosomes. Methods Cell Sci. 23, 115-124
64. Lysak, M.A. et al. (2001) Chromosome painting in Arabidopsis thaliana. Plant J. 28, 689-697
65. Poirier, M.G. and Marko, J.F. (2002) Micromechanical studies of mitotic chromosomes. J. Muscle Res. Cell Motil. 23, 409-431
66. Schmid, M. et al. (2002) Chromosome banding in amphibia. XXIII. Giant W sex chromosomes and extremely small genomes in Eleutherodactylus euphronides and Eleutherodactylus shrevei (Anura, Leptodactylidae). Cytogenet. Genome Res. 97, 81-94
67. Nuismer, S.L. and Thompson, J.N. (2001) Plant polyploidy and non-uniform effects on insect herbivores. Proc. R. Soc. London B. Biol. Sci. 268, 1937-1940
68. Schranz, M.E. and Osborn, T.C. (2000) Novel flowering time variation in the resynthesized polyploid Brassica napus. J. Hered. 91, 242-246
69. Petit, C. and Thompson, J.D. (1997) Variation in phenotypic response to light availability between diploid and tetraploid populations of the perennial grass Arrhenatherum elatius from open and woodland sites. J. Ecol. 85, 657-667
70. Wullschleger, S.D. et al. (1996) Photosynthetic rates and ploidy levels among populations of switchgrass. Crop Sci. 36, 306-312
71. Li, W.L. et al. (1996) Polyploids and their structural and physiological characteristics relative to water deficit in Betula papyrifera (Betulaceae). Am. J. Bot. 83, 15-20
72. Kamel, S. et al. (1985) Diploid and tetraploid gray treefrogs (Hyla chrysoscelis and Hyla versicolor) have similar metabolic rates. Comp. Biochem. Physiol. A 82, 217-220
73. Johnston, I. et al. (1999) Muscle growth and development in normal-sex-ratio and all-female diploid and triploid Atlantic salmon. J. Exp. Biol. 202, 1991-2016
74. Alonso, M. et al. (2000) Effect of induced triploidy on fin regeneration of juvenile rainbow trout, Oncorhynchus mykiss. J. Exp. Zool. 287, 493-502
75. Levin, D.A. (2002) The Role of Chromosomal Change in Plant Evolution, Oxford University Press
76. Petit, C. and Thompson, J.D. (1999) Species diversity and ecological range in relation to ploidy level in the flora of the Pyrenees. Evol. Ecol. 13, 45-66
77. Lowe, A. and Abbott, R. (2000) Routes of origin of two recently evolved hybrid taxa: Senecio vulgaris var. hibernicus and York radiate groundsel (Asteraceae). Am. J. Bot. 87, 1159-1167
78. Baumel, A. et al. (2002) Retrotransposons and genomic stability in populations of the young allopolyploid species Spartina anglica C.E. Hubbard (Poaceae). Mol. Biol. Evol. 19, 1218-1227
79. Sugiyama, S. (1998) Differentiation in competitive ability and cold tolerance between diploid and tetraploid cultivars in Lolium perenne. Euphytica 103, 55-59
80. Abbott, R. and Brochmann, C. (2003) History and evolution of the arctic flora: in the footsteps of Eric Hulten. Mol. Ecol. 12, 299-313
81. Lawton-Rauh, A. et al. (2003) Patterns of nucleotide variation in homoeologous regulatory genes in the allotetraploid Hawaiian silversword alliance (Asteraceae). Mol Ecol. 12, 1301-1313
82. Ming, R. et al. (2002) Comparative analysis of QTLs affecting plant height and flowering among closely-related diploid and polyploid genomes. Genome 45, 794-803
83. Robison, B. et al. (2001) Composite interval mapping reveals a major locus influencing embryonic development rate in rainbow trout (Oncorhynchus mykiss). J. Hered. 92, 16-22
84. Thorgaard, G. et al. (2002) Status and opportunities for genomics research with rainbow trout. Comp. Biochem. Physiol. B 133, 609-646
85. Kochan, K. et al. (2003) Genetic linkage maps of the West African clawed frog Xenopus tropicalis. Dev. Dyn. 226, 99-102
86. Axelsson, T. et al. (2000) Amphidiploid Brassica juncea contains conserved progenitor genomes. Genome 43, 679-688
87. Matzke, M. et al. (2000) Transgene silencing by the host genome defense: implications for the evolution of epigenetic control mechanisms in plants and vertebrates. Plant Mol. Biol. 43, 401-415
88. Bennetzen, J. (2002) Mechanisms and rates of genome expansion and contraction in flowering plants. Genetica 115, 29-36
89. Mette, M. et al. (2002) Endogenous viral sequences and their potential contribution to heritable virus resistance in plants. EMBO J. 21, 461-469
90. Skalicka, K. et al. (2003) Rapid evolution of parental rDNA in a synthetic tobacco allotetraploid line. Am. J. Bot. 90, 988-996
91. Fulnecek, J. et al. (2002) Evolution and structure of 5S rDNA loci in allotetraploid Nicotiana tabacum and its putative parental species. Heredity 88, 19-25
92. Segraves, K.A. and Thompson, J.N. (1999) Plant polyploidy and pollination: floral traits and insect visits to diploid and tetraploid Heuchera grossulariifolia. Evolution 53, 1114-1127
93. Levin, D.A. (2001) The recurrent origin of plant races and species. Syst. Bot. 26, 197-204
94. Espinoza, N. and Noor, M. (2002) Population genetics of a polyploid: is there hybridization between lineages of Hyla versicolor? J. Hered. 93, 81-85
95. Kim, J. et al. (2001) Anomalous rates of evolution of pancreatic polypeptide and peptide tyrosine-tyrosine (PYY) in a tetraploid frog, Xenopus laevis (Anura:Pipidae). Peptides 22, 317-323
96. Rodin, S.N. and Riggs, A.D. (2003) Epigenetic silencing may aid evolution by gene duplication. J. Mol. Evol. 56, 718-729
97. Sakamoto, T. et al. (2000) A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155, 1331-1345
98. Uehara, M. et al. (2002) Chromosome mapping of Xenopus tropicalis using the G-and Ag-bands: tandem duplication and polyploidization of larvae heads. Dev. Growth Differ. 44, 427-436
99. Bowers, J.E. et al. (2003) Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422, 433-438
100. Pryer, K.M. et al. (2002) Deciding among green plants for whole genome studies. Trends Plant Sci. 1, 550-554
101. Somorjai, I.M.L. et al. Distribution of temperature tolerance QTL in Arctic charr (Salvelinus alpinus) and inferred homologies in rainbow trout (Oncorhynchus mykiss). Genetics (in press).
102. Alvares, L. et al. (2002) Molecular evolution of ribosomal intergenic spacers in Odontophrynus americanus 2n and 4n (Amphibia: Anura). Genome 45, 71-81
103. Ludwig, A. et al. (2001) Genome duplication events and functional reduction of ploidy levels in sturgeon (Acipenser, Huso and Scaphirynchus). Genetics 158, 1203-1215
104. Vinogradov, A.E. and Chubinishvili, A.T. (1999) Genome reduction in a hemiclonal frog Rana esculenta from radioactively contaminated areas. Genetics 151, 1123-1125
105. Gornall, R.J. (1999) Population genetic structure in agamospermous plants. In Molecular Systematics and Plant Evolution (Hollingsworth, P.M. et al., eds), Taylor & Francis