Larval identification of Lutjanus Bloch in Nansha coral reefs by AFLP molecular method

Journal of Experimental Marine Biology and Ecology

Volumn 298, Issue 1, 2004, Pages 3-20

  Zhang, Junbin ^a   Huang, Liangmin ^a   Huo, Heqiang ^b  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^b INSTITUTE OF ANIMAL SCIENCE   (China)

Author keywords

AFLP; Larval identification; Lutjanus; Nansha coral reefs

Indexed keywords

IDENTIFICATION METHOD; LARVA; MARICULTURE; MOLECULAR ANALYSIS; POLYMERASE CHAIN REACTION;

PACIFIC ISLANDS; PACIFIC OCEAN; SOUTH CHINA SEA; SPRATLY ISLANDS;

ANTHOZOA; LUTJANUS;

EID: 0346336780     PISSN: 00220981     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-0981(03)00341-1     Document Type: Article

References (78)

1. Agresti, J.J., Seki, S., Cnaani A., Poompuang, S., Hallerman, E.M., Umiel, N., Hulata, G., Gall, G.A.E., May, B., 2000. Breeding new strains of tilapia: development of an artificial center of origin and linkage map based on AFLP and microsatellite loci. Aquaculture 185, 43-56.
2. Allen, G.R., 1986. Genus Lutjanus. In: Margaret, M.S., Phillip, C.H. (Eds.), Smiths' Sea Fishes. Springer-Verlag, Berlin, pp. 573-577.
3. Allen, G.R., Talbot, F.H., 1985. Review of the snappers of the genus Lutjanus (Pisces: Lutjanidae) from the IndoPacific, with the description of a new species. Indo-Pac. Fish. 11, 87-91.
4. Arnaud, S., Bonhomme, F., Borsa, P., 1999. Mitochondrial DNA analysis of the genetic relationships among populations of scad mackerel (Decapterus macarellus, D. macrosoma, and D. russelli) in South-East Asia. Mar. Biol. 135 (4), 699-707.
5. Asahida, T., Yamashita, Y., Kobayashi, T., 1997. Identification of consumed stone flounder Kareius bicoloratus (Basilewsky) from the stomach contents of sand shrimp Crangon affinis (De Haan) using mitochondrial DNA analysis. J. Exp. Mar. Biol. Ecol. 217 (2), 153-163.
6. Asensio, L., Gonzalez, I., Fernandez, A., Cespedes, A., Hernandez, P.E., Garcia, T., Martin, R., 2000. Identification of Nile perch (Lates niloticus), grouper (Epinephelus guaza), and wreck fish (Polyprion americanus) by polymerase chain reaction-restriction fragment length polymorphism of a 12S rRNA Gene Fragment. J. Food Prot. 63 (9), 1248-1252.
7. Bartlett, S.E., Davidson, W.S., 1991. Identification of Thunnus tuna species by the polymerase chain reaction and direct sequence analysis of their mitochondrial cytochrome b genes. Can. J. Fish. Aquat. Sci. 48, 309-317.
8. Blaxter, J.H.S., 1974. Development: eggs and larvae. Fish Physiol. 3, 177-252.
9. Callejas, C., Ochando, M.D., 1998. Identification of Spanish barbel species using the RAPD technique. J. Fish Biol. 53 (1), 208-215.
10. Cespedes, A., Garcia, T., Carrera, E., Gonzalez, I., Sanz, B., Hernandez, P.E., Martin, R., 1998. Identification of flatfish species using polymerase chain reaction (PCR) amplification and restriction analysis of the cytochrome b gene. J. Food Sci. 63 (2), 206-209.
11. Chen, Z.R., Wei, S.Z., 1991. Ichythyoplankton composition and their geographical distribution in the water area around Nansha coral reefs. In: Chen, Q.C. (Ed.), Studies About the Marine Biology in the Water Area Around Nansha Coral Reefs. Shanghai Sci. Technol. Press, Shanghai, pp. 194-228. In Chinese.
12. Chow, S., Walsh, P.J., 1992. Biochemical and morphometric analyses for phylogenetic relationships between seven snapper species (subfamily Lutjaninae) of the western Atlantic. Bull. Mar. Sci. 50 (3), 508-519.
13. Chow, S., Clarke, M.E., Walsh, P.J., 1993. PCR-RFLP analyses on thirteen snappers (subfamily Lutjaninae): a simple method for species and stock identification. Fish. Bull. 91, 619-627.
14. Coenye, T., Schouls, L.M., Govan, J.R.W., Kersters, K., Vandamme, P., 1999. Identification of Burkholderia species and genomovars from cystic fibrosis patients by AFLP fingerprinting. Int. J. Syst. Bacteriol. 49 (4), 1657-1666.
15. Cohen, D.M., 1984. Ontogeny, systematics and phylogeny. Ontogeny and Systematics of Fishes. Amer. Soc. Ichthyol. Herpetol., Sp. Publ., vol. 1, pp. 1-10.
16. Congiu, L., Dupanloup, I., Patarnello, T., Fontana, F., Rossi, R., Arlati, G., Zane, L., 2001. Identification of interspecific hybrids by amplified fragment length polymorphism: the case of sturgeon. Mol. Ecol. 10 (9), 2355-2359.
17. Cordes, J.F., Armknecht, S.L., Starkey, E.A., Graves, J.E., 2001. Forensic identification of sixteen species of Chesapeake bay sportfishes using mitochondrial DNA restriction fragment-length polymorphism (RFLP) Analysis. Estuaries 24 (1), 49-58.
18. Cubeta, M.A., Briones-Ortega, R., Vilgalys, R., 1993. Reassessment of heterokaryon formation in Rhizoctonia solani anastomosis group 4. Mycologia 85 (5), 777-787.
19. Daniel, P.L., 1999. Molecular species identification of newly hatched Hawaiian amphidromous gobioid larvae. Mar. Biotechnol. 1, 167-174.
20. Davis, T.L.O., West, G.J., 1992. Growth and mortality of Lutjanus vittus (Quoy and Gaimard) from the North West Shelf of Australia. Fish. Bull. 90 (2), 395-404.
21. Felsenstein, J., 2001. Taking variation of evolutionary rates between sites into account in inferring phylogenies. J. Mol. Evol. 53 (4), 447-455.
22. Gharrett, A.J., Gray, A.K., Heifetz, J., 2001. Identification of rockfish (Sebastes spp.) by restriction site analysis of the mitochondrial ND-3/ND-4 and 12S/16S rRNA gene regions. Fish. Bull. 99 (1), 49-62.
23. Giannasi, N., Thorpe, R.S., Malhotra, A., 2001. The use of amplified fragment length polymorphism in determining species trees at fine taxonomic levels: analysis of a medically important snake, Trimersurus albolabris. Mol. Ecol. 10, 419-426.
24. Gold, J.R., Pak, E., Richardson, L.R., 2001. Microsatellite variation among red snapper (Lutjanus campechanus) from the gulf of Mexico. Mar. Biotechnol. 3 (3), 293-304.
25. Gomes, C., Dales, R.B.G., Oxenford, H.A., 1998. The application of RAPD markers in stock discrimination of the four-wing flying fish Hirundichthys affinis in the central western Atlantic. Mol. Ecol. 7 (8), 1029-1039.
26. Grewe, P.M., Krueger, C.C., Aquuadro, C.F., Bermingham, E., Kincaid, H.L., May, B., 1993. Mitochondrial DNA variation among lake trout (Salvelinus namaycush) strains stocked into Lake Ontario. Can. J. Fish. Aquat. Sci. 50, 2397-2403.
27. Hallden, C., Nilsson, N.O., Rading, I.N., Sall, T., 1994. Evaluation of RFLP and RAPD markers in a comparison of Brassica napus breeding lines. Theor. Appl. Genet 88 (1), 123-128.
28. Hampl, V., Pavlicek, A., Flegr, J., 2001. Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with the freeware program FreeTree: application to trichomonad parasites. Int. J. Syst. Evol. Microbiol. 51 (3), 731-735.
29. Han, K., Ely, B., 2002. Use of AFLP analyses to assess genetic variation in Morone and Thunnus species. Mar. Biotechnol. 4 (2), 141-145.
30. Heemastra, P.C., 1974. On the identity of certain eastern Pacific and Caribbean post-larval fishes. Proc. Acad. Nat. Sci. Philadelphia 126, 21-26.
31. Heist, E.J., Gold, J.R., 2000. DNA microsatellite loci and genetic structure of red snapper in the gulf of Mexico. Trans. Am. Fish. Soc. 129 (2), 469-475.
32. Hellberg, M.E., Burton, R.S., Neigel, J.E., Palumbi, S.R., 2002. Genetic assessment of connectivity among marine populations. Bull. Mar. Sci. 70 (Suppl. 1), 273-290.
33. Huang, S.Y., Cheng, Z., Huang, Z.Y., 1991. Fish composition and their geographical distribution in the water area around Nansha coral reefs. In: Chen, Q.C. (Ed.), Studies About the Marine Biology in the Water Area Around Nansha Coral Reefs. Shanghai Sci. Technol. Press, Shanghai, pp. 229-254. In Chinese.
34. Hulata, G., 1998. Israel. In: Pullin, R.S.V. (Ed.), Tilapia Genetic Resources for Aquaculture. ICLARM Conf Proc., vol. 16, pp. 48-51. Manila, Philippines.
35. Innes, B.H., Grewe, P.M., Ward, R.D., 1998. PCR-based genetic identification of marlin and other billfish. Mar. Freshw. Res. 49 (5), 383-388.
36. Kaunda, A.B., Ntiba, M.J., 1997. The reproductive biology of Lutjanus fulviflamma (Forsskaal, 1775) (Pisces: Lutjanidae) in Kenyan inshore marine waters. Hydrobiologia 353 (1-3), 153-160.
37. Kavanagh, K.D., 2000. Larval brooding in the marine damselfish Acanthochromis polyacanthus (Pomacentridae) is correlated with highly divergent morphology, ontogeny and life-hitory traits. Bull. Mar. Sci. 66 (2), 321-337.
38. Keim, P., Kalif, A., Schupp, J., Hill, K., Travis, S.E., Richmond, K., Adair, D.M., Hugh-Jones, M., Kuske, C.R., Jackson, P., 1997. Molecular evolution and diversity in Bacillus anthracis as detected by amplified fragment lengthpolymorphism markers. J. Bacteriol. 179, 818-824.
39. Koopman, W.J.M., Zevenbergen, M.J., Van-den-Berg, R.G., 2001. Species relationships in Lactuca S. L. (Lactuceae, Asteraceae) inferred from AFLP fingerprints. Am. J. Bot. 88, 1881-1887.
40. Li, Q.S., 1987. Genus Lutjanus. In: Cheng, Q.T., Zheng, B.S. (Eds.), The Taxonomy of Fishes in China. Chinese Science Press, Beijing, pp. 324-327. In Chinese.
41. Lievens, S., Goormachtig, S., Holsters, M., 2001. A critical evaluation of differential display as a tool to identify genes involved in legume nodulation: looking back and looking forward. Nucleic Acids Res. 29 (17), 3459-3468.
42. McKay, S.J., Smith, M.J., Devlin, R.H., 1997. Polymerase chain reaction-based species identification of salmon and coastal trout in British Columbia. Mol. Mar. Biol. Biotechnol. 6 (2), 131-140.
43. Miyata, M., Inglis, V., Aoki, T., 1996. Rapid identification of Aeromonas salmonicida subspecies salmonicida by the polymerase chain reaction. Aquaculture 141 (1-2), 13-24.
44. Moberg, P.E., Burton, R.S., 2000. Genetic heterogeneity among adult and recruit red sea urchins Strongylocentrotus franciscanus. Mar. Biol. 36, 773-784.
45. Mueller, U.G., Wolfenbarger, L.L., 1999. AFLP genotyping and fingerprinting. Trends Ecol. Evol. 14, 389-394.
46. Musiy, Y.I., Sergiyenko, V.A., 1977. Finerlings of the genus Lutjanus (Lutjanidae, Perciformes) from the Gulf of Aden. J. Ichthyol. 17, 151-154.
47. Nei, M., Li, W.H., 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U. S. A. 76, 5259-5273.
48. Newman, S.J., Cappo, M., Williams, D.M., 2000. Age, growth and mortality of the stripey, Lutjanus carponotatus (Richardson) and the brown-stripe snapper, L. vitta (Quoy and Gaimard) from the central Great Barrier Reef. Fish. Res. Australia 48 (3), 263-275.
49. Noell, C.J., Donnellan, S., Foster, R., Haigh, L., 2001. Molecular discrimination of garfish Hyporhamphus (Beloniformes) larvae in southern Australian waters. Mar. Biotechnol. 3 (6), 509-514.
50. Ogden, R., Thorpe, R.S., 2001. The usefulness of amplified fragment length polymorphism markers for taxon discrimination across graduated fine evolutionary levels in Caribbean Anolis lizards. Mol. Ecol. 11 (3), 437-445.
51. Okiyama, M. (Ed.), 1987. An atlas of the Early Stage Fishes in Japan. East Sea Univ. Press, Tokyo, pp. 511-517. In Japanese.
52. Oshima, K., 1987. Family Lutjanidae. In: Okiyama, O. (Ed.), An Atlas of the Early Stage Fishes in Japan. East Sea Univ. Press, Tokyo, pp. 511-517. In Japanese.
53. Palumbi, S.R., 1996. What can molecular genetics contribute to marine biogeography? An urchin's tale. J. Exp. Mar. Biol. Ecol. 203 (1), 73-92.
54. Parsons, Y.M., Shaw, K.L., 2001. Species boundaries and genetic diversity among Hawaiian crickets of the genus Laupala identified using amplified fragment length polymorphism. Mol. Ecol. 10, 1765-1772.
55. Powell, A.B., Hoss, D.E., 1989. Abundance and distribution of ichthyoplankton in Florida Bay and adjacent waters. Bull. Mar. Sci. 44, 35-48.
56. Quagliaro, G., Vischi, M., Tyrka, M., Olivieri, A.M., 2001. Identification of wild and cultivated sunflower for breeding purposes by AFLP markers. J. Heredity 92 (1), 38-42.
57. Rivas, L.R., 1966. Review of the Lutjanus campechanus complex of red snappers. Q. J. Fla. Acad. Sci. 29, 117-136.
58. Rocha-Olivares, A., 1998. Multiplex haplotype-specific PCR: a new approach for species identification of the early life stages of rockfishes of the species-rich genus Sebastes Cuvier. J. Exp. Mar. Biol. Ecol. 231, 279-290.
59. Russell, F.S., 1976. The Eggs and Planktonic Stages of British Marine Fishes. Academic Press, London, pp. 3-17.
60. Sarver, S.K., Freshwater, D.W., Walsh, P.J., 1996. Phylogenetic relationships of western Atlantic snappers (family Lutjanidae) based on mitochondrial DNA sequences. Copeia 3, 715-721.
61. Savelkoul, P.H.M., Aarts, H.J.M., De Haas, J., Dijkshoorn, L., Duim, B., Otsen, M., Rademaker, J.L.W., Schouls, L., Lenstra, J.A., 1999. Amplified-fragment length polymorphism analysis: the state of an art. J. Clin. Microbiol. 37 (10), 3083-3091.
62. Sebastio, P.Z.P., Neri, T.M., 2001. Identification of anchovy (Engraulis encrasicolus L.) and gilt sardine (Sardinella aurita) by polymerase chain reaction, sequence of their mitochondrial cytochrome b gene, and restriction analysis of polymerase chain reaction products in semipreserves. J. Agric. Food Chem. 49 (3), 1194-1199.
63. Semblat, J.P., Wajnberg, E., Dalmasso, A., Abad, P., Castagnone, S.P., 1998. High-resolution DNA fingerprinting of parthenogenetic root-knot nematodes using AFLP analysis. Mol. Ecol. 7, 119-125.
64. Swofford, D.L., Olsen, G.J., Waddel, P.J., Hillis, D.M., 1996. Phylogenetic inference. In: Hillis, D.M., Moritz, C., Mable, B.K. (Eds.), Molecular Systematics, 2nd ed. Sinauer Associates, Sunderland, MA, pp. 407-514.
65. Takagi, M., Taniguchi, N., 1995. Random amplified polymorphic DNA (RAPD) for identification of three species of Anguilla, A. japonica, A. australis and A. bicor. Fish. Sci. 65 (5), 884-885.
66. Terefework, Z., Kaijalainen, S., Lindström, K., 2001. AFLP fingerprinting as a tool to study the genetic diversity of Rhizobium galegae isolated from Galega orientalis and Galega officinalis. J. Biotechnol. 91, 169-180.
67. Thome, J., Gonzalez, D.O., Beebe, S., Duque, M., 1996. AFLP analysis of gene pools of a wild bean core collection. Crop Sci. 36, 1375-1384.
68. Tommerup, I.C., Barton, J.E., O'Brien, P.A., 1995. Reliability of RAPD fingerprinting of three basidiomycete fungi, Laccaria, Hydnangium and Rhizoctonia. Mycol. Res. 99, 179-186.
69. Tyrka, M., 2002. A simplified AFLP method for fingerprinting of common wheat (Triticum aestivum L.) cultivars. J. Appl. Genet. 43 (2), 131-143.
70. Vollestad, L., Hindar, K., 2001. Developmental stability in brown trout: are there any effects of heterozygosity or environmental stress? Biol. J. Linn. Soc. 73 (3), 351-364.
71. Vos, P., Hogers, M., Reijians, M., Lee, T., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M., Zabeau, M., 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23, 4407-4414.
72. Wasko, A.P., Martins, C., Wright, J.M., Galetti, P.M.J., 2001. Molecular organization of 5S rDNA in fishes of the genus Brycon. Genome 44 (5), 893-902.
73. Williams, S.T., 2001. Species boundaries in the starfish genus Linckia. Mar. Biol. 136, 137-148.
74. Wilson, K., Li, Y.T., Whan, V., Lehnert, S., Byrne, K., Moore, S., Pongsomboon, S., Tassanakajon, A., Rosenberg, G., Ballment, E., Fayazi, Z., Swan, J., Kenway, M., Benzie, J., 2002. Genetic mapping of the black tiger shrimp Penaeus monodon with amplified fragment length polymorphism. Aquaculture 204, 297-309.
75. Wong, H.L., Yeoh, H.H., Lim, S.H., 1999. Customisation of AFLP analysis of cassava varietal identification. Phytochemistry 50 (6), 919-924.
76. Young, W.P., Ostberg, C.O., Keim, P., Thorgaard, G.H., 2001. Genetic characterization of hybridization and introgression between anadromous rainbow trout (Oncorhynchus mykiss irideus) and coastal cutthroat trout (O. clarki clarki). Mol. Ecol. 10, 921-930.
77. Zabeau, M., Vos, P., 1993. Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Application No. 9240269.7; Publication No. EP 0534858 A1.
78. Zhang, R.Z., Lu, S.R., 1985. Genus Lutjanus. In: Zhang, R.Z., Lu, S.F., Zhao, C.Y., Chen, L.F., Zang, Z.J., Jiang, Y.W. (Eds.), Fish Eggs and Larvae in the Offshore Waters of China. Shanghai Sci. Technol. Press, Shanghai, pp. 99-104. In Chinese.