Identification of Burkholderia species and genomovars from cystic fibrosis patients by AFLP fingerprinting

International Journal of Systematic Bacteriology

Volumn 49, Issue 4, 1999, Pages 1657-1666

  Coenye, Tom ^a   Schouls, Leo M ^b   Govan, John R W ^c   Kersters, Karel ^a   Vandamme, Peter ^a,d  

^a GHENT UNIVERSITY   (Belgium)

^b NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

^c UNIVERSITY OF EDINBURGH   (United Kingdom)

^d ANTWERP UNIVERSITY HOSPITAL   (Belgium)

Author keywords

AFLP; Burkholderia; Identification

Indexed keywords

ARTICLE; AUTOMATION; AUTORADIOGRAPHY; BACTERIUM IDENTIFICATION; BURKHOLDERIA; CYSTIC FIBROSIS; DNA FINGERPRINTING; DNA SEQUENCE; GENE AMPLIFICATION; HUMAN; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; RESTRICTION FRAGMENT; TAXONOMY;

BURKHOLDERIA;

EID: 0032748478     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-49-4-1657     Document Type: Article

References (29)

1. Anonymous (1992). Pseudomonas cepacia - more than a harmless commensal? (editorial). Lancet 339, 1385-1386.
2. Brett, P. J., DeShazer, D. & Woods, D. E. (1998). Burkholderia thailandensis sp. nov., a Burkholderia pseudomallei-like species. M J Syst Bacteriol 48, 317-320.
3. Christenson, J. C., Welch, D. F., Mukwaya, G., Muszynski, M. J., Weaver, R. E. & Brenner, D. J. (1989). Recovery of Pseudomonas gladioli from respiratory tract specimens of patients with cystic fibrosis. J Clin Microbiol 27, 270-273.
4. Coenye, T., Govan, J. R. W., Kersters, K. & Vandamme, P. (1998). Identification of Burkholderia species from CF patients and the environment by AFLP fingerprinting. Poster C-200, 98th General Meeting of the American Society for Microbiology. May 17-21, 1998. Atlanta, GA, USA.
5. Coenye, T., Holmes, B., Kersters, K., Govan, J. R. W. & Vandamme, P. (1999). Burkholderia cocovenenans (van Damme et al. 1960) Gillis et al. 1995 and Burkholderia vandu Urakami et al. 1994 are junior synonyms of Burkholderia gladioli (Severini 1913) Yabuuchi et al. 1993 and Burkholderia plantaru (Azegami et al. 1987) Urakami et al. 1994, respectively. Int J Syst Bacteriol 49, 37-42.
6. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
7. Desai, M., Tanna, A., Wall, R., Efstratiou, A., George, R. & Stanley, J. (1998). Fluorescent amplified-fragment length polymorphism analysis of an outbreak of group A streptococcal invasive disease. J Clin Microbiol 36, 3133-3137.
8. 2-fixing isolates from rice in Vietnam. Int J Syst Bacteriol 45, 274-289.
9. Govan, J. R. W. & Deretic, V. (1996). Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia. Microbiol Rev 60, 539-574.
10. Govan, J. R. W., Brown, P. H., Maddison, J., Doherty, C. J., Nelson, J. W., Dodd, M., Greening, A. P. & Webb, A. K. (1993). Evidence for transmission of Pseudomonas cepacia by social contact in cystic fibrosis. Lancet 342, 15-19.
11. Govan, J. R. W., Hughes, J. E. & Vandamme, P. (1996). Burkholderia cepacia: medical, taxonomic and ecological issues. J Med Microbiol 45, 395-407.
12. Huys, G., Coopman, R., Janssen, P. & Kersters, K. (1996). High-resolution genotypic analysis of the genus Aeromonas by AFLP fingerprinting. Int J Syst Bacteriol 46, 572-580.
13. Isles, A., Maclusky, I., Corey, M., Gold, R., Prober, C., Fleming, P. & Levison, H. (1984). Pseudomonas cepacia infection in cystic fibrosis: an emerging problem. J Pediatr 104, 206-210.
14. Janssen, P., Coopman, R., Huys, G., Swings, J., Bleeker, M., Vos, P., Zabeau, M. & Kersters, K. (1996). Evaluation of the DNA fingerprinting method AFLP as a new tool in bacterial taxonomy. Microbiology 142, 1881-1893.
15. Janssen, P., Maquelin, K., Coopman, R., Tjernberg, I., Bouvet, P., Kersters, K. & Dijkshoorn, L. (1997). Discrimination of Acinetobacter genomic species by AFLP fingerprinting. Int J Syst Bacteriol 47, 1179-1187.
16. Kiska, D. L., Kerr, A., Jones, M. C. & 7 other authors (1996). Accuracy of four commercial systems for identification of Burkholderia cepacia and other gram-negative, nonfermenting bacilli recovered from patients with cystic fibrosis. J Clin Microbiol 34, 886-891.
17. Koeleman, J. G. M., Stoof, J., Biesmans, D. J., Savelkoul, P. H. M. & Vandenbroucke-Grauls, C. M. J. E. (1998). Comparison of amplified ribosomal DNA restriction analysis, random amplified polymorphic DNA analysis, and amplified fragment length polymorphism fingerprinting for identification of Acinetobacter genomic species and typing of Acinetobacter baumannii. J Clin Microbiol 36, 2522-2529.
18. Leff, L. G., Kernan, R. M., McArthur, J. V. & Shimkets, L. J. (1995). Identification of aquatic Burkholderia (Pseudomonas) cepacia by hybridization with species-specific rRNA gene probes. Appl Environ Microbiol 61, 1634-1636.
19. AL. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 141-199. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
20. Palleroni, N. J., Kunisawa, R., Contopoulo, R. & Doudoroff, M. (1973). Nucleic acid homologies in the genus Pseudomonas. Int J Syst Bacteriol 23, 333-339.
21. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 109-114.
22. Simpson, I. N., Finlay, J., Winstanley, D. J., Dewhurst, N., Nelson, J. W., Butler, S. L. & Govan, J. R. W. (1994). Multi-resistance isolates possessing characteristics of both Burkholderia (Pseudomonas) cepacia and Burkholderia gladioli from patients with cystic fibrosis. J Antimicrob Chemother 34, 353-361.
23. Vandamme, P., Vancanneyt, M., Pot, B. & 10 other authors (1992). Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens. Int J Syst Bacteriol 42, 344-356.
24. Vandamme, P., Holmes, B., Vancanneyt, M. & 8 other authors (1997). Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp nov. Int J Syst Bacteriol 47, 1188-1200.
25. Viallard, V., Poirier, I., Cournoyer, B., Haurat, J., Wiebkin, S, Ophel-Keller, K. & Balandreau, J. (1998). Burkholderia graminis sp. nov., a rhizospheric Burkholderia species, and reassessment of [Pseudomonas] phenazmium, [Pseudomonas] pyrrocinia and [Pseudomonas] glathei as Burkholderia. Int J Syst Bacteriol 48, 549-563.
26. Vos, P., Hogers, R., Bleeker, M. & 8 other authors (1995). AFLP a new technique for DNA fingerprinting. Nucleic Acids Res 23, 4407-4414.
27. Wittke, R., Ludwig, W., Peiffer, S. & Kleiner, D. (1997). Isolation and characterisation of Burkholderia norimbergensis sp. nov , a mildly alkaliphilic sulfur oxidizer. Syst Appl Microbiol 20, 549-553.
28. Yabuuchi, E., Kosako, Y., Oyaizu, H., Yano, I., Hotta, H, Hashimoto, Y., Ezaki, T. & Arakawa, M. (1992). Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol Immunol 36, 1251-1275.
29. Zhao, N., Qu, C., Wang, E. & Chen, W. (1995). Phylogenetic evidence for the transfer of Pseudomonas cocovenenans (van Damme et al. 1960) to the genus Burkholderia as Burkholderia cocovenenans (van Damme et al. 1960) comb. nov. Int J Syst Bacteriol 45, 600-603.