Heart transplantation changes the expression of distinct gene families

Physiological Genomics

Volumn 2002, Issue 7, 2002, Pages 115-126

  Ngimbous, Bedel Biyiha ^a   Bourgeois, Francine ^b   Mas, Christophe ^b   Simonneau, Michel ^b   Moalic, Jean Marie ^a  

^a HÔPITAL LARIBOISIÈRE   (France)

^b HÔPITAL ROBERT DEBRÉ   (France)

Author keywords

Cardiac denervation; Differential display; Expression profile homologies; Heart transplantation

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA;

ANIMAL; ANIMAL MODEL; ARTICLE; DENERVATION; DOWN REGULATION; EXPRESSED SEQUENCE TAG; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; HEART ATRIUM; HEART TRANSPLANTATION; HETEROTOPIC TRANSPLANTATION; INNERVATION; ISOGRAFT; LEWIS RAT; MALE; METABOLISM; MULTIGENE FAMILY; PHYSIOLOGY; RAT; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; UPREGULATION;

ANIMALS; DENERVATION; DNA, COMPLEMENTARY; DOWN-REGULATION; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; HEART ATRIA; HEART TRANSPLANTATION; MALE; MODELS, ANIMAL; MULTIGENE FAMILY; RATS; RATS, INBRED LEW; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSPLANTATION, HETEROTOPIC; TRANSPLANTATION, ISOGENEIC; UP-REGULATION;

EID: 0346109675     PISSN: 15312267     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (55)

1. Bernard K, Auphan N, Granjeaud S, Victorero G, Schmitt-Verhulst AM, Jordan BR, and Nguyen C. Multiplex messenger assay: simultaneous, quantitative measurement of expression of many genes in the context of T cell activation. Nucleic Acids Res 24: 1435-1442, 1996.
2. Bourgeois F, Guimot F, Mas C, Bulfone A, Levacher B, Moalic JM, and Simonneau M. Identification and isolation of a full-length clone of mouse GMFB, a putative intracellular kinase regulator, differentially expressed in telencephalon. Cytogenet Cell Genet 92: 304-309, 2001.
3. Bounpheng MA, Melnikova IN, Dodds SG, Chen H, Copeland NG, Gilbert DJ, Jenkins NA, and Christy BA. Characterization of the mouse JAB1 cDNA and protein. Gene 242: 41-50, 2000.
4. Brandolin G, Le Saux A, Trezeguet V, Lauquin GJ, and Vignais PV. Chemical, immunological, enzymatic, and genetic approaches to studying the arrangement of the peptide chain of the ADP/ATP carrier in the mitochondrial membrane. J Bioenerg Biomembr 25: 459-472, 1993.
5. Chan YL and Wool IG. The primary structure of rat ribosomal protein S6. J Biol Chem 263: 2891-2896, 1988.
6. Chomczynski P and Sacchi N. Single-step method of RNA isolation by guanidium thiocyanate-phenol-chloroform extraction. Anal Biochem 162: 156-159, 1987.
7. Claret FX, Hibi M, Dhut S, Toda T, and Karin M. A new group of conserved coactivators that increase the specificity of AP-1 transcription factors. Nature 383: 453-457, 1996.
8. Cotts WG and Oren RM. Function of the transplanted heart: unique physiology and therapeutic implications. Am J Med Sci 314: 164-172, 1997.
9. Dejneka NS, Patanow CM, Polavarapu R, Toggas SM, Krady JK, and Billingsley ML. Localization and characterization of stannin: relationship to cellular sensitivity to organotin compounds. Neurochem Int 31: 801-815, 1997.
10. Depre C, Shipley GL, Chen W, Han Q, Doenst T, Moore ML, Stepkowski S, Davies PJA, and Taegtmeyer H. Unloaded heart in vivo replicates fetal gene expression of cardiac hypertrophy. Nat Med 4: 1269-1275, 1998.
11. 14C]glucose by rat skeletal muscle homogenates. J Neurochem 40: 727-733, 1983.
12. Duggan DJ, Bittner M, Chen Y, Meltzer P, and Trent JM. Expression profiling using cDNA microarrays. Nat Genet 21: 10-14, 1999.
13. Elalouf JM, Buhler JM, Tessiot C, Bellanger AC, Dublineau I, and de Rouffignac C. Predominant expression of beta 1-adrenergic receptor in the thick ascending limb of rat kidney. Absolute mRNA quantitation by reverse transcription and polymerase chain reaction. J Clin Invest 91: 264-272, 1993.
14. Farhadian F, Contard F, Sabri A, Samuel JL, and Rappaport L. Fibronectin and basement membrane in cardiovascular organogenesis and disease pathogenesis. Cardiovasc Res 32: 433-422, 1996.
15. Ferreira GC, Pratt RD, and Pedersen PL. Energy-linked anion transport: cloning, sequencing, and characterization of a full length cDNA encoding the rat liver mitochondrial proton/ phosphate symporter. J Biol Chem 264: 15628-15633, 1989.
16. Fieldhouse D and Golding GB. The rat adenine phosphoribosyltransferase sequence shows evolutionary rate variation among exons in rodents. Genome 36: 1107-1110, 1993.
17. Fujioka Y, Matozaki T, Noguchi T, Iwamatsu A, Yamao T, Takahashi N, Tsuda M, Takada T, and Kasuga M. A novel membrane glycoprotein, SHPS-1, that binds the SH2-domain-containing protein tyrosine phosphatase SHP-2 in response to mitogens and cell adhesion. Mol Cell Biol 16: 6887-6899, 1996.
18. Geschwind DH, Ou J, Easterday MC, Dougherty JD, Jackson RL, Chen Z, Antoine H, Terskikh A, Weissman IL, Nelson SF, and Kornblum HI. A genetic analysis of neural progenitor differentiation. Neuron 29: 325-339, 2001.
19. Grinnell AD. Dynamics of nerve-muscle interactions in developing and mature neuromuscular junctions. Physiol Rev 75: 789-834, 1995.
20. Hardouin S, Bourgeois F, Toraason M, Oubenaïssa A, Elalouf JM, Fellmann D, Dakhli T, Swynghedauw B, and Moalic JM. β-adrenergic and muscarinic receptor mRNA accumulation in the sinoatrial node area of adult and senescent rat hearts. Mech Ageing Dev 100: 277-297, 1998.
21. Hieter P and Boguski M. Functional genomics: it's all how you read it. Science 278: 601-602, 1997.
22. Iyer VR, Eisen MB, Ross DT, Schuler G, Moore T, Lee JCF, Trent JM, Staudt LM, Hudson J Jr, Boguski MS, Lashkari D, Shalon D, Botstein D, and Brown PO. The transcriptional program in the response of human fibroblasts to serum. Science 283: 83-87, 1999.
23. Jacob HJ. Functional genomics and rat models. Genome Res 9: 1013-1016, 1999.
24. Johnson JD, Mehus JG, Tews K, Milavetz BI, and Lambeth DO. Genetic evidence for the expression of ATP- and GTP-specific succinyl-CoA synthetases in multicellular eucaryotes. J Biol Chem 273: 27580-27586, 1998.
25. 3 exchanger. J Biol Chem 265: 462-471, 1990.
26. Lander ES. The new genomics: global views of biology. Science 274: 536-539, 1996.
27. Lee CK, Klopp RG, Weindruch R, and Prolla TA. Gene expression profile of aging and its retardation by caloric restriction. Science 285: 1390-1393, 1999.
28. Liang P, Zhu W, Zhang X, Guo Z, O'Connell R, Averboukh L, Wang F, and Pardee AB. Differential display using one-base anchored oligo-dT primers. Nucleic Acids Res 22: 5763-5764, 1994.
29. Lockhart DJ, Dong H, Byrne MC, Follettie MT, Gallo MV, Chee MS, Mittmann M, Wang C, Kobayashi M, Horton H, and Brown EL. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol 14: 1675-1680, 1996.
30. Lomako J, Lomako WM, and Whealan WJ. A self-glycosylating protein is the primer for rabbit muscle glycogen biosynthesis. FASEB J 2: 3097-3103, 1988.
31. Mas C, Bourgeois F, Bulfone A, Levacher B, Mugnier C, and Simonneau M. Cloning and expression analysis of a novel gene, RP42, mapping to an autism susceptibility locus on 6q16. Genomics 65: 70-74, 2000.
32. Menasche P, Termignon JL, Pradier F, Grousset C, Mouas C, Alberici G, Weiss M, Piwnica A, and Bloch G. Experimental evaluation of Celsior, a new heart preservation solution. Eur J Cardiothorac Surg 8: 207-13, 1994.
33. Miranda-Vizuete A, Pedrajas JR, Damdimopoulos AE, and Spyrou G. Cloning and sequencing of mouse glutaredoxin (grx) cDNA. DNA Seq 10: 179-182, 1999.
34. Moruzzi EV and Bergamini E. Effect of denervation on glycogen metabolism in fast and slow muscle of rat. Muscle Nerve 6: 356-366, 1983.
35. Nakamura T, Ohno T, Hirota K, Nishiyama A, Nakamura H, Wada H, and Yodoi J. Mouse glutaredoxin: cDNA cloning, high level expression in E. coli and its possible implication in redox regulation of the DNA binding activity in transcription factor PEBP2. Free Radic Res 31: 357-65, 1999.
36. Neckelmann N, Li K, Wade RP, Shuster R, and Wallace DC. cDNA sequence of a human skeletal muscle ADP/ATP translocator: lack of a leader peptide, divergence from a fibroblast translocator cDNA, and coevolution with mitochondrial DNA genes. Proc Natl Acad Sci USA 84: 7580-7584, 1987.
37. Ono K and Lindsey ES. Improved technique of heart transplantation in rats. J Thorac Cardiovasc Surg 57: 225-229, 1969.
38. Oubénaïssa A, Mouas C, Bourgeois F, Alberici C, Moalic JM, and Menasché P. Evidence for an involvement of the neutrophil integrin lymphocyte function-associated antigen-1 in early failure of heart transplants. Circulation 94: II254-II259, 1996.
39. Pak BJ, Sangaralingham SJ, and Pang SC. Molecular cloning and developmental expression of rat glycogenin in cardiac tissue. Mol Cell Biochem 194: 117-123, 1999.
40. Parker TG, Packer SE, and Schneider MD. Peptide growth factors can provoke "fetal" contractile protein gene expression in rat cardiac myocytes. J Clin Invest 85: 507-514, 1990.
41. Parker TG and Schneider MD. Growth factors, proto-oncogenes, and plasticity of the cardiac phenotype. Annu Rev Physiol 53: 179-200, 1991.
42. Pennisi E. Genomics: rat genome off to an early start. Science 289: 1267-1269, 2000.
43. Russell ME, Utans U, Wallace AF, Liang P, Arceci RJ, Karnovsky MJ, Wyner LR, Yamashita Y, and Tarn C. Identification and upregulation of galactose/N-acetylgalactosamine macrophage lectin in rat cardiac allografts with atherosclerosis. J Clin Invest 94: 722-730, 1994.
44. Ryan DG, Lin T, Brownie E, Bridger WA, and Wolodko WT. Mutually exclusive splicing generates two distinct isoforms of pig heart succinyl-CoA synthetase. J Biol Chem 272: 21151-21159, 1997.
45. Sabri A, Farhadian F, Contard F, Samuel JL, and Rappaport L. Fibronectin expression in the cardiovascular system. Herz 20: 118-126, 1995.
46. Sahir N, Mas C, Bourgeois F, Simonneau M, Evrard P, and Gressens P. Caffeine-induced telencephalic vesicle evagination in early post-implantation mouse embryos involves cAMP-dependent protein kinase (PKA) inhibition. Cereb Cortex 11: 343-349, 2001.
47. Samuel JL, Barrieux A, Dufour S, Dubus I, Contard F, Koteliansky V, Farhadian F, Marotte F, Thiéry JP, and Rappaport L. Accumulation of fetal fibronectin mRNAs during the development of rat cardiac hypertrophy induced by pressure overload. J Clin Invest 88: 1737-1746, 1991.
48. Schena M, Shalon D, Davis RW, and Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270: 467-470, 1995.
49. Schwarzbauer JE, Patel RS, Fonda D, and Hynes RO. Multiple sites of alternative splicing of the rat fibronectin gene transcript. EMBO J 6: 2573-2580, 1987.
50. Toggas SM, Krady J, and Billingsley ML. Molecular neurotoxicology of trimethyltin: identification of stannin, a novel protein expressed in trimethyltin-sensitive cells. Mol Pharmacol 42: 44-56, 1992.
51. Turker MS, Cooper GE, and Bishop PL. Region-specific rates of molecular evolution: a fourfold reduction in the rate of accumulation of silent mutations in transcribed vs. nontranscribed regions of homologous DNA fragments derived from two closely related mouse species. J Mol Evol 36: 31-40, 1993.
52. Utans U, Liang P, Wyner LR, Karnovsky MJ, and Russell ME. Chronic cardiac rejection: identification of five upregulated genes in transplanted hearts by differential mRNA display. Proc Natl Acad Sci USA 91: 6463-6467, 1994.
53. Wang X and Feuerstein GZ. The use of differential display for discovery of novel therapeutic targets in cardiovascular disease. Cardiovasc Res 35: 414-421, 1997.
54. Wool IG, Chan YL, Paz V, and Olvera J. The primary structure of rat ribosomal proteins: the amino acid sequences of L27a and L28 and corrections in the sequence of S4 and S12. Biochim Biophys Acta 1050: 69-73, 1990.
55. Welford SM, Gregg J, Chen E, Garrison D, Sorensen PH, Denny CT, Nelson SF. Detection of differentially expressed genes in primary tumor tissues using representational differences analysis coupled to microarray hybridization. Nucleic Acids Res 26: 3059-3065, 1998.