메뉴 건너뛰기




Volumn 41, Issue 12, 2003, Pages 1540-1551

Mass spectrometry-based proteomics: Current status and potential use in clinical chemistry

Author keywords

Isotope coded affinity tag: ICAT; Mass spectrometry; Molecular scanner; MuDPIT; Multi dimensional protein identification technology; Proteomics; Proteomics workflows; SELDI; Surface enhanced laser desorption ionisation

Indexed keywords

PROTEOME;

EID: 0346097965     PISSN: 14346621     EISSN: None     Source Type: Journal    
DOI: 10.1515/CCLM.2003.237     Document Type: Review
Times cited : (30)

References (51)
  • 2
    • 13344269000 scopus 로고    scopus 로고
    • From proteins to proteomes: Large-scale protein identification by two-dimensional electrophoresis and amino acid analysis
    • Wilkins MR, Pasquali C, Appel RD, Keli O, Golaz O, Sanchez JC, et al. From proteins to proteomes: large-scale protein identification by two-dimensional electrophoresis and amino acid analysis. Biotechnology 1996; 14:61-5.
    • (1996) Biotechnology , vol.14 , pp. 61-65
    • Wilkins, M.R.1    Pasquali, C.2    Appel, R.D.3    Keli, O.4    Golaz, O.5    Sanchez, J.C.6
  • 3
    • 0033027936 scopus 로고    scopus 로고
    • Proteome analysis. II. Protein subcellular redistribution: Linking physiology to genomics via the proteome and separation technologies involved
    • Patton WF. Proteome analysis. II. Protein subcellular redistribution: linking physiology to genomics via the proteome and separation technologies involved. J Chromatogr B Biomed Sci Appl 1999; 722:203-23.
    • (1999) J. Chromatogr. B Biomed. Sci. Appl. , vol.722 , pp. 203-223
    • Patton, W.F.1
  • 4
    • 0034218584 scopus 로고    scopus 로고
    • Proteomics: The next step after genomics?
    • Bradbury J. Proteomics: the next step after genomics? Lancet 2000; 356:50
    • (2000) Lancet , vol.356 , pp. 50
    • Bradbury, J.1
  • 5
    • 0034659815 scopus 로고    scopus 로고
    • Proteomics to study genes and genomes
    • Pandey A, Mann M. Proteomics to study genes and genomes. Nature 2000; 405:837-46.
    • (2000) Nature , vol.405 , pp. 837-846
    • Pandey, A.1    Mann, M.2
  • 8
    • 0033904796 scopus 로고    scopus 로고
    • Proteomics: The industrialization of protein chemistry
    • Patterson SD. Proteomics: the industrialization of protein chemistry. Curr Opin Biotechnol 2000; 11:413-8.
    • (2000) Curr. Opin. Biotechnol. , vol.11 , pp. 413-418
    • Patterson, S.D.1
  • 9
    • 0037226876 scopus 로고    scopus 로고
    • Liquid chromatography-tandem mass spectrometry - Application in the clinical laboratory
    • Vogeser M. Liquid chromatography-tandem mass spectrometry - application in the clinical laboratory. Clin Chem Lab Med 2003; 41:117-26.
    • (2003) Clin. Chem. Lab. Med. , vol.41 , pp. 117-126
    • Vogeser, M.1
  • 10
    • 0024289037 scopus 로고
    • Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons
    • Karas M, Hillenkamp F. Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. Anal Chem 1988; 60:2299-301.
    • (1988) Anal. Chem. , vol.60 , pp. 2299-2301
    • Karas, M.1    Hillenkamp, F.2
  • 11
    • 0347181851 scopus 로고
    • ⋯ Presented at the second Japan-China symposium on mass spectrometry, Osaka, Japan
    • Tanaka K, Ido Y, Akita S, Yoshida T. ⋯ Presented at the second Japan-China symposium on mass spectrometry, 1987, Osaka, Japan.
    • (1987)
    • Tanaka, K.1    Ido, Y.2    Akita, S.3    Yoshida, T.4
  • 12
    • 0016711037 scopus 로고
    • High resolution two-dimensional electrophoresis of proteins
    • O'Farrell PH. High resolution two-dimensional electrophoresis of proteins. J Biol Chem 1975; 250:4007.
    • (1975) J. Biol. Chem. , vol.250 , pp. 4007
    • O'Farrell, P.H.1
  • 14
    • 0016767686 scopus 로고
    • Two-dimensional gel analysis of soluble proteins. Characterization of guinea pig exocrine pancreatic proteins
    • Scheele GA. Two-dimensional gel analysis of soluble proteins. Characterization of guinea pig exocrine pancreatic proteins. J Biol Chem 1975; 250:4007-21.
    • (1975) J. Biol. Chem. , vol.250 , pp. 4007-4021
    • Scheele, G.A.1
  • 15
    • 0016637146 scopus 로고
    • Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals
    • Klose J. Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals. Human-genetik 1975; 26:231-43.
    • (1975) Human-genetik , vol.26 , pp. 231-243
    • Klose, J.1
  • 16
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Lämmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970; 277:680-5.
    • (1970) Nature , vol.277 , pp. 680-685
    • Lämmli, U.K.1
  • 17
    • 0023931883 scopus 로고
    • Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250
    • Neuhoff V, Arold N, Taube D, Ehrhardt W. Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250. Electrophoresis 1988; 9:255-62.
    • (1988) Electrophoresis , vol.9 , pp. 255-262
    • Neuhoff, V.1    Arold, N.2    Taube, D.3    Ehrhardt, W.4
  • 18
    • 0025053763 scopus 로고
    • Mechanisms of protein silver staining in polyacrylamide gels: A 10-year synthesis
    • Rabilloud T. Mechanisms of protein silver staining in polyacrylamide gels: a 10-year synthesis. Electrophoresis 1990; 11:785-94.
    • (1990) Electrophoresis , vol.11 , pp. 785-794
    • Rabilloud, T.1
  • 19
    • 0026599977 scopus 로고
    • Reverse staining of sodium dodecyl sulfate polyacrylamide gels by imidazole-zinc salts: Sensitive detection of unmodified proteins
    • Fernandez-Patron C, Castellanos-Serra L, Rodriguez P. Reverse staining of sodium dodecyl sulfate polyacrylamide gels by imidazole-zinc salts: sensitive detection of unmodified proteins. Biotechniques 1992; 12:564-73.
    • (1992) Biotechniques , vol.12 , pp. 564-573
    • Fernandez-Patron, C.1    Castellanos-Serra, L.2    Rodriguez, P.3
  • 20
    • 0019808432 scopus 로고
    • The TYCHO system for computer analysis of two-dimensional gel electrophoresis patterns
    • Anderson NL, Taylor J, Scandora AE, Coulter BP, Anderson NG. The TYCHO system for computer analysis of two-dimensional gel electrophoresis patterns. Clin Chem 1981; 27:1807-20.
    • (1981) Clin. Chem. , vol.27 , pp. 1807-1820
    • Anderson, N.L.1    Taylor, J.2    Scandora, A.E.3    Coulter, B.P.4    Anderson, N.G.5
  • 21
    • 0023869984 scopus 로고
    • Elsie 4: Quantitative computer analysis of sets of two-dimensional gel electrophoretograms
    • Olson AD, Miller MJ. Elsie 4: quantitative computer analysis of sets of two-dimensional gel electrophoretograms. Anal Biochem 1988; 169:49-70.
    • (1988) Anal. Biochem. , vol.169 , pp. 49-70
    • Olson, A.D.1    Miller, M.J.2
  • 22
    • 0027769618 scopus 로고
    • An efficient disk based data structure for rapid searching of quantitative two-dimensional gel databases
    • Lemkin PF, Wu Y, Upton K. An efficient disk based data structure for rapid searching of quantitative two-dimensional gel databases. Electrophoresis 1993; 14:1341-50.
    • (1993) Electrophoresis , vol.14 , pp. 1341-1350
    • Lemkin, P.F.1    Wu, Y.2    Upton, K.3
  • 23
    • 0027763434 scopus 로고
    • A fast spot segmentation algorithm for two-dimensional gel electrophoresis analysis
    • Wu Y, Lemkin PF, Upton K. A fast spot segmentation algorithm for two-dimensional gel electrophoresis analysis. Electrophoresis 1993; 14:1351-6.
    • (1993) Electrophoresis , vol.14 , pp. 1351-1356
    • Wu, Y.1    Lemkin, P.F.2    Upton, K.3
  • 25
    • 38049131517 scopus 로고    scopus 로고
    • Automatic registration for images of two-dimensional protein gels
    • Smilansky Z. Automatic registration for images of two-dimensional protein gels. Electrophoresis 2001; 22:1616-26.
    • (2001) Electrophoresis , vol.22 , pp. 1616-1626
    • Smilansky, Z.1
  • 26
    • 0031444888 scopus 로고    scopus 로고
    • Melanie II - A third-generation software package for analysis of two-dimensional electrophoresis images: I. Features and user interface
    • Appel RD, Palagi PM, Walther D, Vargas JR, Sanchez J-C, Ravier F, et al. Melanie II - a third-generation software package for analysis of two-dimensional electrophoresis images: I. Features and user interface. Electrophoresis 1997; 18:2724-34.
    • (1997) Electrophoresis , vol.18 , pp. 2724-2734
    • Appel, R.D.1    Palagi, P.M.2    Walther, D.3    Vargas, J.R.4    Sanchez, J.-C.5    Ravier, F.6
  • 27
    • 0031445948 scopus 로고    scopus 로고
    • Melanie II - A third-generation software package for analysis of two-dimensional electrophoresis images: II. Algorithms
    • Appel RD, Vargas JR, Palagi PM, Walther D, Hochstrasser DF. Melanie II - a third-generation software package for analysis of two-dimensional electrophoresis images: II. Algorithms. Electrophoresis 1997; 18:2735-48.
    • (1997) Electrophoresis , vol.18 , pp. 2735-2748
    • Appel, R.D.1    Vargas, J.R.2    Palagi, P.M.3    Walther, D.4    Hochstrasser, D.F.5
  • 29
    • 0006048997 scopus 로고    scopus 로고
    • Internet resources for protein identification and characterization
    • Kellner R, Lottspeich F, Meyer H, editors. Weinheim: Wiley-VHC
    • Binz PA, Wilkins M, Gasteiger E, Bairoch A, Appel R, Hochstrasser DF. Internet resources for protein identification and characterization. In: Kellner R, Lottspeich F, Meyer H, editors. Microcharacterization of proteins. Weinheim: Wiley-VHC, 1999:277-99.
    • (1999) Microcharacterization of Proteins , pp. 277-299
    • Binz, P.A.1    Wilkins, M.2    Gasteiger, E.3    Bairoch, A.4    Appel, R.5    Hochstrasser, D.F.6
  • 30
    • 0029053727 scopus 로고
    • Rapid mass spectrometric peptide sequencing and mass matching for characterization of human melanoma proteins isolated by two-dimensional PAGE
    • Clauser KR, Hall SC, Smith DM, Webb JW, Andrews LE, Tran HM, et al. Rapid mass spectrometric peptide sequencing and mass matching for characterization of human melanoma proteins isolated by two-dimensional PAGE. Proc Natl Acad Sci USA 1995; 92:5072-6.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 5072-5076
    • Clauser, K.R.1    Hall, S.C.2    Smith, D.M.3    Webb, J.W.4    Andrews, L.E.5    Tran, H.M.6
  • 31
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJ, Creasy DM, Cottrell JS. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999; 20:3551-67.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 32
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng JK, McCormack AL, Yates JR 3rd. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spec 1994; 5:976-89.
    • (1994) J. Am. Soc. Mass Spec. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates III, J.R.3
  • 33
    • 0033887451 scopus 로고    scopus 로고
    • Identifying the proteome: Software tools
    • Fenyö D. Identifying the proteome: software tools. Curr Opin Biotechnol 2000; 11:391-5.
    • (2000) Curr. Opin. Biotechnol. , vol.11 , pp. 391-395
    • Fenyö, D.1
  • 34
    • 0041358793 scopus 로고    scopus 로고
    • OLAV: Towards high-throughput mass spectrometry data identification
    • Colinge J, Masselot A, Giron M, Dessingy T, Magnin J. OLAV: towards high-throughput mass spectrometry data identification. Proteomics 2003; 3:1454-63.
    • (2003) Proteomics , vol.3 , pp. 1454-1463
    • Colinge, J.1    Masselot, A.2    Giron, M.3    Dessingy, T.4    Magnin, J.5
  • 37
    • 0041939641 scopus 로고    scopus 로고
    • A molecular scanner to automate proteomic research and to display proteome images
    • Binz PA, Müller M, Walther D, Bienvenut WV, Gras R, Hoogland C, et al. A molecular scanner to automate proteomic research and to display proteome images. Anal Chem 1999; 71:4981-8.
    • (1999) Anal. Chem. , vol.71 , pp. 4981-4988
    • Binz, P.A.1    Müller, M.2    Walther, D.3    Bienvenut, W.V.4    Gras, R.5    Hoogland, C.6
  • 38
    • 0033230904 scopus 로고    scopus 로고
    • Toward a clinical molecular scanner for proteome research: Parallel protein chemical processing before and during western blot
    • Bienvenut WV, Sanchez J-C, Karmime A, Rouge V, Rose K, Binz P-A, et al. Toward a clinical molecular scanner for proteome research: parallel protein chemical processing before and during western blot. Anal Chem 1999; 71:4800-7.
    • (1999) Anal. Chem. , vol.71 , pp. 4800-4807
    • Bienvenut, W.V.1    Sanchez, J.-C.2    Karmime, A.3    Rouge, V.4    Rose, K.5    Binz, P.-A.6
  • 40
    • 0036808064 scopus 로고    scopus 로고
    • Molecular scanner experiment with human plasma: Improving protein identification by using intensity distributions of matching peptide masses
    • Muller M, Gras R, Binz PA, Hochstrasser DF, Appel RD. Molecular scanner experiment with human plasma: improving protein identification by using intensity distributions of matching peptide masses. Proteomics 2002; 2:1413-25.
    • (2002) Proteomics , vol.2 , pp. 1413-1425
    • Muller, M.1    Gras, R.2    Binz, P.A.3    Hochstrasser, D.F.4    Appel, R.D.5
  • 41
    • 0035582244 scopus 로고    scopus 로고
    • An automated multidimensional protein identification technology for shotgun proteomics
    • Wolters DA, Washburn MP, Yates JR 3rd. An automated multidimensional protein identification technology for shotgun proteomics. Anal Chem 2001; 73:5683-90.
    • (2001) Anal. Chem. , vol.73 , pp. 5683-5690
    • Wolters, D.A.1    Washburn, M.P.2    Yates III, J.R.3
  • 42
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn MP, Wolters D, Yates JR 3rd. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 2001; 19:242-7.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3
  • 44
    • 0034013944 scopus 로고    scopus 로고
    • Recent advancements in surface-enhanced laser desorption/ionization-tir-ne of flight-mass spectrometry
    • Merchant M, Weinberger SR. Recent advancements in surface-enhanced laser desorption/ionization-tir-ne of flight-mass spectrometry. Electrophoresis 2000; 21:1164-77.
    • (2000) Electrophoresis , vol.21 , pp. 1164-1177
    • Merchant, M.1    Weinberger, S.R.2
  • 45
    • 0035313732 scopus 로고    scopus 로고
    • Protein and antibody arrays and their medical applications
    • Cahill DJ. Protein and antibody arrays and their medical applications. J Immunol Meth 2001; 250:81-91.
    • (2001) J. Immunol. Meth. , vol.250 , pp. 81-91
    • Cahill, D.J.1
  • 46
    • 0035224918 scopus 로고    scopus 로고
    • Arrays for protein expression profiling: Towards a viable alternative to two-dimensional gel electrophoresis?
    • Jenkins RE, Pennington SR. Arrays for protein expression profiling: towards a viable alternative to two-dimensional gel electrophoresis? Proteomics 2001; 1:13-29.
    • (2001) Proteomics , vol.1 , pp. 13-29
    • Jenkins, R.E.1    Pennington, S.R.2
  • 47
    • 84984777638 scopus 로고    scopus 로고
    • Proteomics and molecular medicine
    • Parekh R. Proteomics and molecular medicine. Nat Biotech 1999; 17:Suppl 1999:19-20.
    • (1999) Nat. Biotech. , vol.17 , Issue.SUPPL. 1999 , pp. 19-20
    • Parekh, R.1
  • 48
    • 25044440368 scopus 로고    scopus 로고
    • Applications in bladder cancer
    • Presentation to the IBC conference on Technical Advances & Application of Proteomics. London, February
    • Celis JE. Applications in bladder cancer. Presentation to the IBC conference on Technical Advances & Application of Proteomics. London, February 1998.
    • (1998)
    • Celis, J.E.1
  • 49
    • 0031027946 scopus 로고    scopus 로고
    • 'Hepatoma-specific' alphafetoprotein may permit preclinical diagnosis of malignant change in patients with chronic liver disease
    • Johnson PJ, Leung N, Cheng P, Welby C, Leung WT, Lau WY, et al. 'Hepatoma-specific' alphafetoprotein may permit preclinical diagnosis of malignant change in patients with chronic liver disease. Br J Cancer 1997; 75:236-40.
    • (1997) Br. J. Cancer , vol.75 , pp. 236-240
    • Johnson, P.J.1    Leung, N.2    Cheng, P.3    Welby, C.4    Leung, W.T.5    Lau, W.Y.6
  • 50
    • 25044464118 scopus 로고    scopus 로고
    • Differential proteomic analysis of nipple aspirate fluid as an approach to personalized diagnosis of breast cancer
    • [abstract] Presented at the IFCC Oakridge Conference
    • Goldknopf IL, Sheta E, Nair A, Park HR, Hunt KK, Krishnamurty S, et al. Differential proteomic analysis of nipple aspirate fluid as an approach to personalized diagnosis of breast cancer [abstract]. Presented at the IFCC Oakridge Conference, 2002.
    • (2002)
    • Goldknopf, I.L.1    Sheta, E.2    Nair, A.3    Park, H.R.4    Hunt, K.K.5    Krishnamurty, S.6
  • 51
    • 25044455647 scopus 로고    scopus 로고
    • Merging diagnostics with therapeutics through proteomics
    • IVD Technol (URL:)
    • Goldknopf IL, Park HR, Kuerer HM. Merging diagnostics with therapeutics through proteomics. IVD Technol 2003; 9:(URL: http:www.devicelink.com/ivdt/archieve/03/01/002.html)
    • (2003) , vol.9
    • Goldknopf, I.L.1    Park, H.R.2    Kuerer, H.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.