-
1
-
-
0035936144
-
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
-
Katinka,M.D., Duprat,S., Cornillot,E., Metenier,G., Thomarat,F., Prensier,G., Barbe,V., Peyretaillade,E., Brottier,P., Wincker,P. et al. (2001) Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature, 414, 450-453.
-
(2001)
Nature
, vol.414
, pp. 450-453
-
-
Katinka, M.D.1
Duprat, S.2
Cornillot, E.3
Metenier, G.4
Thomarat, F.5
Prensier, G.6
Barbe, V.7
Peyretaillade, E.8
Brottier, P.9
Wincker, P.10
-
2
-
-
0037014604
-
Transposon-like Correia elements: Structure, distribution and genetic exchange between pathogenic Neirsseria sp
-
Buisine,N., Tang,C.M. and Chalmers,R. (2002) Transposon-like Correia elements: structure, distribution and genetic exchange between pathogenic Neirsseria sp. FEBS Lett., 522, 52-58.
-
(2002)
FEBS Lett.
, vol.522
, pp. 52-58
-
-
Buisine, N.1
Tang, C.M.2
Chalmers, R.3
-
3
-
-
0035343895
-
Comparative architecture of transposase and integrase complexes
-
Rice,P.A. and Baker,T.A. (2001) Comparative architecture of transposase and integrase complexes. Nature Struct. Biol., 8, 302-307.
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 302-307
-
-
Rice, P.A.1
Baker, T.A.2
-
4
-
-
0035997348
-
V(D)J recombination: Rag proteins, repair factors and regulation
-
Gellert,M. (2002) V(D)J recombination: rag proteins, repair factors and regulation. Annu. Rev. Biochem., 71, 101-132.
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 101-132
-
-
Gellert, M.1
-
5
-
-
0034057541
-
Complete nucleotide sequence of Tn10
-
Chalmers,R., Sewitz,S., Lipkow,K. and Crellin,P. (2000) Complete nucleotide sequence of Tn10. J. Bacteriol., 182, 2970-2972.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2970-2972
-
-
Chalmers, R.1
Sewitz, S.2
Lipkow, K.3
Crellin, P.4
-
6
-
-
85157982134
-
Transposon Tn10
-
Craig,N.L., Craigie,R., Gellert,M. and Lambowitz,A.M. (eds), American Society for Microbiology, Washington, DC, USA
-
Haniford,D.B. (2002) Transposon Tn10. In Craig,N.L., Craigie,R., Gellert,M. and Lambowitz,A.M. (eds), Mobile DNA II. American Society for Microbiology, Washington, DC, USA, pp. 457-483.
-
(2002)
Mobile DNA II
, pp. 457-483
-
-
Haniford, D.B.1
-
7
-
-
0030451819
-
Crystal structure of an IHF-DNA complex: A protein-induced DNA U-turn
-
Rice,P.A., Yang,S., Mizuuchi,K. and Nash,H.A. (1996) Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell, 87, 1295-1306.
-
(1996)
Cell
, vol.87
, pp. 1295-1306
-
-
Rice, P.A.1
Yang, S.2
Mizuuchi, K.3
Nash, H.A.4
-
8
-
-
0002480960
-
The E. coli HU and IHF proteins: Accessory factors for complex protein-DNA assemblies
-
Lin,C.C. and Lynch,A.S. (eds), Landes Co., Austin, TX, USA
-
Nash,H.A. (1996) The E. coli HU and IHF proteins: accessory factors for complex protein-DNA assemblies. In Lin,C.C. and Lynch,A.S. (eds), Regulation of Gene Expression in Escherichia coli. Landes Co., Austin, TX, USA, pp. 149-166.
-
(1996)
Regulation of Gene Expression in Escherichia Coli
, pp. 149-166
-
-
Nash, H.A.1
-
9
-
-
0024291348
-
Integration host factor: A protein for all reasons
-
Friedman,D.I. (1988) Integration host factor: a protein for all reasons. Cell, 55, 545-554.
-
(1988)
Cell
, vol.55
, pp. 545-554
-
-
Friedman, D.I.1
-
10
-
-
0034703060
-
Global gene expression profiling in Escherichia coli K12. The effects of integration host factor
-
Arfin,S.M., Long,A.D., Ito,E.T., Tolleri,L., Riehle,M.M., Paegle,E.S. and Hatfield,G.W. (2000) Global gene expression profiling in Escherichia coli K12. The effects of integration host factor. J. Biol. Chem., 275, 29672-29684.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 29672-29684
-
-
Arfin, S.M.1
Long, A.D.2
Ito, E.T.3
Tolleri, L.4
Riehle, M.M.5
Paegle, E.S.6
Hatfield, G.W.7
-
11
-
-
0026325164
-
Similarity between the DNA-binding domains of IHF protein and TFIID protein
-
[letter]
-
Nash,H.A. and Granston,A.E. (1991) Similarity between the DNA-binding domains of IHF protein and TFIID protein [letter]. Cell, 67, 1037-1038.
-
(1991)
Cell
, vol.67
, pp. 1037-1038
-
-
Nash, H.A.1
Granston, A.E.2
-
12
-
-
0030019492
-
A structural DNA binding protein of African swine fever virus with similarity to bacterial histone-like proteins
-
Borca,M.V., Irusta,P.M., Kutish,G.F., Carillo,C., Afonso,C.L., Burrage,A.T., Neilan,J.G. and Rock,D.L. (1996) A structural DNA binding protein of African swine fever virus with similarity to bacterial histone-like proteins. Arch. Virol., 141, 301-313.
-
(1996)
Arch. Virol.
, vol.141
, pp. 301-313
-
-
Borca, M.V.1
Irusta, P.M.2
Kutish, G.F.3
Carillo, C.4
Afonso, C.L.5
Burrage, A.T.6
Neilan, J.G.7
Rock, D.L.8
-
13
-
-
85158019877
-
Lambda integrase and the lambda Int family
-
Craig,N.L., Craigie,R., Gellert,M. and Lambowitz,A.M. (eds), American Society for Microbiology, Washington, DC, USA
-
Azaro,M.A. and Landy,A. (2002) Lambda integrase and the lambda Int family. In Craig,N.L., Craigie,R., Gellert,M. and Lambowitz,A.M. (eds), Mobile DNA II. American Society for Microbiology, Washington, DC, USA, pp. 118-148.
-
(2002)
Mobile DNA II
, pp. 118-148
-
-
Azaro, M.A.1
Landy, A.2
-
14
-
-
0019783899
-
Purification and properties of the Escherichia coli protein factor required for lambda integrative recombination
-
Nash,H.A. and Robertson,C.A. (1981) Purification and properties of the Escherichia coli protein factor required for lambda integrative recombination. J. Biol. Chem., 256, 9246-9253.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 9246-9253
-
-
Nash, H.A.1
Robertson, C.A.2
-
16
-
-
0024433737
-
Action at a distance in Mu DNA transposition: An enhancer-like element is the site of action of supercoiling relief activity by integration host factor (IHF)
-
Surette,M.G., Lavoie,B.D. and Chaconas,G. (1989) Action at a distance in Mu DNA transposition: an enhancer-like element is the site of action of supercoiling relief activity by integration host factor (IHF). EMBO J., 8, 3483-3489.
-
(1989)
EMBO J.
, vol.8
, pp. 3483-3489
-
-
Surette, M.G.1
Lavoie, B.D.2
Chaconas, G.3
-
17
-
-
0024501683
-
A protein factor which reduces the negative supercoiling requirement in the Mu DNA strand transfer reaction is Escherichia coli integration host factor
-
Surette,M.G. and Chaconas,G. (1989) A protein factor which reduces the negative supercoiling requirement in the Mu DNA strand transfer reaction is Escherichia coli integration host factor. J. Biol. Chem., 264, 3028-3034.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 3028-3034
-
-
Surette, M.G.1
Chaconas, G.2
-
18
-
-
0035898687
-
Protein-DNA contacts and conformational changes in the Tn10 transpososome during assembly and activation for cleavage
-
Crellin,P. and Chalmers,R. (2001) Protein-DNA contacts and conformational changes in the Tn10 transpososome during assembly and activation for cleavage. EMBO J., 20, 3882-3891.
-
(2001)
EMBO J.
, vol.20
, pp. 3882-3891
-
-
Crellin, P.1
Chalmers, R.2
-
19
-
-
0034651857
-
Tn10 transpososome assembly involves a folded intermediate that must be unfolded for target capture and strand transfer
-
Sakai,J.S., Kleckner,N., Yang,X. and Guhathakurta,A. (2000) Tn10 transpososome assembly involves a folded intermediate that must be unfolded for target capture and strand transfer. EMBO J., 19, 776-785.
-
(2000)
EMBO J.
, vol.19
, pp. 776-785
-
-
Sakai, J.S.1
Kleckner, N.2
Yang, X.3
Guhathakurta, A.4
-
20
-
-
0028239766
-
Tn10/IS10 transposase purification, activation and in vitro reaction
-
Chalmers,R.M. and Kleckner,N. (1994) Tn10/IS10 transposase purification, activation and in vitro reaction. J. Biol. Chem., 269, 8029-8035.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 8029-8035
-
-
Chalmers, R.M.1
Kleckner, N.2
-
21
-
-
0029143391
-
Identification and characterization of a pre-cleavage synaptic complex that is an early intermediate in Tn10 transposition
-
Sakai,J., Chalmers,R.M. and Kleckner,N. (1995) Identification and characterization of a pre-cleavage synaptic complex that is an early intermediate in Tn10 transposition. EMBO J., 14, 4374-4383.
-
(1995)
EMBO J.
, vol.14
, pp. 4374-4383
-
-
Sakai, J.1
Chalmers, R.M.2
Kleckner, N.3
-
22
-
-
0038047138
-
Integration host factor: Putting a twist on protein-DNA recognition
-
Lynch,T.W., Read,E.K., Mattis,A.N., Gardner,J.F. and Rice,P.A. (2003) Integration host factor: putting a twist on protein-DNA recognition. J. Mol. Biol., 330, 493-502.
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 493-502
-
-
Lynch, T.W.1
Read, E.K.2
Mattis, A.N.3
Gardner, J.F.4
Rice, P.A.5
-
23
-
-
0029096898
-
The phage Mu transpososome core: DNA requirements for assembly and function
-
Savilahti,H., Rice,P.A. and Mizuuchi,K. (1995) The phage Mu transpososome core: DNA requirements for assembly and function. EMBO J., 14, 4893-4903.
-
(1995)
EMBO J.
, vol.14
, pp. 4893-4903
-
-
Savilahti, H.1
Rice, P.A.2
Mizuuchi, K.3
-
24
-
-
0032555758
-
DNA transposition by the RAG1 and RAG2 proteins: A possible source of oncogenic translocations
-
Hiom,K., Melek,M. and Gellert,M. (1998) DNA transposition by the RAG1 and RAG2 proteins: a possible source of oncogenic translocations. Cell, 94, 463-470.
-
(1998)
Cell
, vol.94
, pp. 463-470
-
-
Hiom, K.1
Melek, M.2
Gellert, M.3
-
25
-
-
0030967281
-
The Tn10 synaptic complex can capture a target DNA only after transposon excision
-
Sakai,J. and Kleckner,N. (1997) The Tn10 synaptic complex can capture a target DNA only after transposon excision. Cell, 89, 205-214.
-
(1997)
Cell
, vol.89
, pp. 205-214
-
-
Sakai, J.1
Kleckner, N.2
-
26
-
-
0032084698
-
Assembly of a 12/23 paired signal complex: A critical control point in V(D)J recombination
-
Hiom,K. and Gellert,M. (1998) Assembly of a 12/23 paired signal complex: a critical control point in V(D)J recombination. Mol. Cell, 1, 1011-1019.
-
(1998)
Mol. Cell
, vol.1
, pp. 1011-1019
-
-
Hiom, K.1
Gellert, M.2
-
27
-
-
0026019625
-
Structural basis for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I: A two metal ion mechanism
-
Beese,L.S. and Steitz,T.A. (1991) Structural basis for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism. EMBO J., 10, 25-33.
-
(1991)
EMBO J.
, vol.10
, pp. 25-33
-
-
Beese, L.S.1
Steitz, T.A.2
-
28
-
-
0028881713
-
Polymerase structures and function: Variations on a theme?
-
Joyce,C.M. and Steitz,T.A. (1995) Polymerase structures and function: variations on a theme? J. Bacteriol., 177, 6321-6329.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6321-6329
-
-
Joyce, C.M.1
Steitz, T.A.2
-
29
-
-
0034724557
-
Single active site catalysis of the successive phosphoryl transfer steps by DNA transposases: Insights from phosphorothioate stereoselectivity
-
Kennedy,A.K., Haniford,D.B. and Mizuuchi,K. (2000) Single active site catalysis of the successive phosphoryl transfer steps by DNA transposases: insights from phosphorothioate stereoselectivity. Cell, 101, 295-305.
-
(2000)
Cell
, vol.101
, pp. 295-305
-
-
Kennedy, A.K.1
Haniford, D.B.2
Mizuuchi, K.3
-
30
-
-
0037245974
-
Progressive structural transitions within Mu transpositional complexes
-
Yanagihara,K. and Mizuuchi,K. (2003) Progressive structural transitions within Mu transpositional complexes. Mol. Cell, 11, 215-224.
-
(2003)
Mol. Cell
, vol.11
, pp. 215-224
-
-
Yanagihara, K.1
Mizuuchi, K.2
-
31
-
-
0033614815
-
Divalent cations stimulate preferential recognition of a viral DNA end by HIV-1 integrase
-
Yi,J., Asante-Appiah,E. and Skalka,A.M. (1999) Divalent cations stimulate preferential recognition of a viral DNA end by HIV-1 integrase. Biochemistry, 38, 8458-8468.
-
(1999)
Biochemistry
, vol.38
, pp. 8458-8468
-
-
Yi, J.1
Asante-Appiah, E.2
Skalka, A.M.3
-
32
-
-
0030922072
-
A metal-induced conformational change and activation of HIV-1 integrase
-
Asante-Appiah,E. and Skalka,A.M. (1997) A metal-induced conformational change and activation of HIV-1 integrase. J. Biol. Chem., 272, 16196-16205.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 16196-16205
-
-
Asante-Appiah, E.1
Skalka, A.M.2
-
33
-
-
0032567350
-
Structural determinants of metal-induced conformational changes in HIV-1 integrase
-
Asante-Appiah,E., Seeholzer,S.H. and Skalka,A.M. (1998) Structural determinants of metal-induced conformational changes in HIV-1 integrase. J. Biol. Chem., 273, 35078-35087.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 35078-35087
-
-
Asante-Appiah, E.1
Seeholzer, S.H.2
Skalka, A.M.3
-
34
-
-
0032601403
-
HIV-1 integrase: Structural organization, conformational changes and catalysis
-
Asante-Appiah,E. and Skalka,A.M. (1999) HIV-1 integrase: structural organization, conformational changes and catalysis. Adv. Virus Res., 52, 351-369.
-
(1999)
Adv. Virus Res.
, vol.52
, pp. 351-369
-
-
Asante-Appiah, E.1
Skalka, A.M.2
-
35
-
-
0027216519
-
The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures
-
Paull,T.T., Haykinson,M.J. and Johnson,R.C. (1993) The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures. Genes Dev., 7, 1521-1534.
-
(1993)
Genes Dev.
, vol.7
, pp. 1521-1534
-
-
Paull, T.T.1
Haykinson, M.J.2
Johnson, R.C.3
-
36
-
-
0028147923
-
Architectural elements in nucleoprotein complexes: Interchangeability of specific and non-specific DNA binding proteins
-
Segall,A.M., Goodman,S.D. and Nash,H.A. (1994) Architectural elements in nucleoprotein complexes: interchangeability of specific and non-specific DNA binding proteins. EMBO J., 13, 4536-4548.
-
(1994)
EMBO J.
, vol.13
, pp. 4536-4548
-
-
Segall, A.M.1
Goodman, S.D.2
Nash, H.A.3
-
37
-
-
0032521389
-
A protein-induced DNA bend increases the specificity of a prokaryotic enhancer-binding protein
-
Dworkin,J., Ninfa,A.J. and Model,P. (1998) A protein-induced DNA bend increases the specificity of a prokaryotic enhancer-binding protein. Genes Dev., 12, 894-900.
-
(1998)
Genes Dev.
, vol.12
, pp. 894-900
-
-
Dworkin, J.1
Ninfa, A.J.2
Model, P.3
-
38
-
-
0028922082
-
The regulation of transcription initiation by integration host factor
-
Goosen,N. and van de Putte,P. (1995) The regulation of transcription initiation by integration host factor. Mol. Microbiol., 16, 1-7.
-
(1995)
Mol. Microbiol.
, vol.16
, pp. 1-7
-
-
Goosen, N.1
van de Putte, P.2
-
39
-
-
0032516863
-
Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequence
-
Sheridan,S.D., Benham,C.J. and Hatfield,G.W. (1998) Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequence. J. Biol. Chem., 273, 21298-21308.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 21298-21308
-
-
Sheridan, S.D.1
Benham, C.J.2
Hatfield, G.W.3
-
40
-
-
0036307672
-
FIS modulates the kinetics of successive interactions of RNA polymerase with the core and upstream regions of the tyrT promoter
-
Pemberton,I.K., Muskhelishvili,G., Travers,A.A. and Buckle,M. (2002) FIS modulates the kinetics of successive interactions of RNA polymerase with the core and upstream regions of the tyrT promoter. J. Mol. Biol., 318, 651-663.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 651-663
-
-
Pemberton, I.K.1
Muskhelishvili, G.2
Travers, A.A.3
Buckle, M.4
-
41
-
-
0029071840
-
Negative and positive regulation of Tn10/IS10-promoted recombination by IHF: Two distinguishable processes inhibit transposition off of multicopy plasmid replicons and activate chromosomal events that favor evolution of new transposons
-
Signon,L. and Kleckner,N. (1995) Negative and positive regulation of Tn10/IS10-promoted recombination by IHF: two distinguishable processes inhibit transposition off of multicopy plasmid replicons and activate chromosomal events that favor evolution of new transposons. Genes Dev., 9, 1123-1136.
-
(1995)
Genes Dev.
, vol.9
, pp. 1123-1136
-
-
Signon, L.1
Kleckner, N.2
-
42
-
-
0032577448
-
IHF modulation of Tn10 transposition: Sensory transduction of supercoiling status via a proposed protein/DNA molecular spring
-
Chalmers,R., Guhathakurta,A., Benjamin,H. and Kleckner,N. (1998) IHF modulation of Tn10 transposition: sensory transduction of supercoiling status via a proposed protein/DNA molecular spring. Cell, 93, 897-908.
-
(1998)
Cell
, vol.93
, pp. 897-908
-
-
Chalmers, R.1
Guhathakurta, A.2
Benjamin, H.3
Kleckner, N.4
-
43
-
-
0034616993
-
Three-dimensional structure of the Tn5 synaptic complex transposition intermediate
-
[see comments]
-
Davies,D.R., Goryshin,I.Y., Reznikoff,W.S. and Rayment,I. (2000) Three-dimensional structure of the Tn5 synaptic complex transposition intermediate [see comments]. Science, 289, 77-85.
-
(2000)
Science
, vol.289
, pp. 77-85
-
-
Davies, D.R.1
Goryshin, I.Y.2
Reznikoff, W.S.3
Rayment, I.4
-
44
-
-
0037102133
-
IHF-independent assembly of the Tn10 strand transfer transpososome: Implications for inhibition of disintegration
-
Stewart,B.J., Wardle,S.J. and Haniford,D.B. (2002) IHF-independent assembly of the Tn10 strand transfer transpososome: implications for inhibition of disintegration. EMBO J., 21, 4380-4390.
-
(2002)
EMBO J.
, vol.21
, pp. 4380-4390
-
-
Stewart, B.J.1
Wardle, S.J.2
Haniford, D.B.3
-
45
-
-
0003102529
-
Mechanistic aspects of Tn10 transposition
-
PhD Thesis, University of Western Ontario, London, Ontario, Canada
-
Kennedy,A.K. (1999) Mechanistic aspects of Tn10 transposition. PhD Thesis, University of Western Ontario, London, Ontario, Canada.
-
(1999)
-
-
Kennedy, A.K.1
|