-
1
-
-
0019783899
-
Purification and properties of the Escherichia coli protein factor required for lambda integrative recombination
-
Nash H.A., Robertson C.A. Purification and properties of the Escherichia coli protein factor required for lambda integrative recombination. J. Biol. Chem. 256:1981;9246-9253.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 9246-9253
-
-
Nash, H.A.1
Robertson, C.A.2
-
2
-
-
0026705508
-
The role of integration host factor in gene expression in Escherichia coli
-
Freundlich M., Ramani N.E.M., Sirko A., Tsui P. The role of integration host factor in gene expression in Escherichia coli. Mol. Microbiol. 6:1992;2557-2563.
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 2557-2563
-
-
Freundlich, M.1
Ramani, N.E.M.2
Sirko, A.3
Tsui, P.4
-
3
-
-
0024291348
-
Integration host factor: A protein for all reasons
-
Friedman D.I. Integration host factor: a protein for all reasons. Cell. 55:1988;545-554.
-
(1988)
Cell
, vol.55
, pp. 545-554
-
-
Friedman, D.I.1
-
4
-
-
0025180835
-
Searching for and predicting the activity of sites for DNA binding proteins: Compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF)
-
Goodrich J.A., Schwartz M.L., McClure W.R. Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Nucl. Acids Res. 18:1990;4993-5000.
-
(1990)
Nucl. Acids Res.
, vol.18
, pp. 4993-5000
-
-
Goodrich, J.A.1
Schwartz, M.L.2
McClure, W.R.3
-
5
-
-
0021710080
-
E. coli integration host factor binds to specific sites in DNA
-
Craig N.L., Nash H.A. E. coli integration host factor binds to specific sites in DNA. Cell. 39:1984;707-716.
-
(1984)
Cell
, vol.39
, pp. 707-716
-
-
Craig, N.L.1
Nash, H.A.2
-
6
-
-
0024340266
-
The interaction of E. coli IHF protein with its specific binding sites
-
Yang C.C., Nash H.A. The interaction of E. coli IHF protein with its specific binding sites. Cell. 57:1989;868-880.
-
(1989)
Cell
, vol.57
, pp. 868-880
-
-
Yang, C.C.1
Nash, H.A.2
-
7
-
-
0027327311
-
Genetic and biochemical analysis of the integration host factor of Escherichia coli
-
Mengeritsky G., Goldenberg D., Mendelson I., Giladi H., Oppenheim A.B. Genetic and biochemical analysis of the integration host factor of Escherichia coli. J. Mol. Biol. 231:1993;646-657.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 646-657
-
-
Mengeritsky, G.1
Goldenberg, D.2
Mendelson, I.3
Giladi, H.4
Oppenheim, A.B.5
-
8
-
-
0029561532
-
Comparison of protein binding to DNA in vivo and in vitro: Defining an effective intracellular target
-
Yang S.W., Nash H.A. Comparison of protein binding to DNA in vivo and in vitro: defining an effective intracellular target. EMBO J. 14:1995;6292-6300.
-
(1995)
EMBO J.
, vol.14
, pp. 6292-6300
-
-
Yang, S.W.1
Nash, H.A.2
-
9
-
-
0030451819
-
Crystal structure of an IHF-DNA complex: A protein-induced DNA U-turn
-
Rice P.A., Yang S.-W., Mizuuchi K., Nash H.A. Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell. 87:1996;1295-1306.
-
(1996)
Cell
, vol.87
, pp. 1295-1306
-
-
Rice, P.A.1
Yang, S.-W.2
Mizuuchi, K.3
Nash, H.A.4
-
10
-
-
0029041940
-
Stereochemical basis of DNA bending by transcription factors
-
Suzuki M., Yagi N. Stereochemical basis of DNA bending by transcription factors. Nucl. Acids Res. 23:1995;2083-2091.
-
(1995)
Nucl. Acids Res.
, vol.23
, pp. 2083-2091
-
-
Suzuki, M.1
Yagi, N.2
-
11
-
-
0025970545
-
Genetic analysis of Escherichia coli integration host factor interactions with its bacteriophage lambda H′ recognition site
-
Lee E.C., MacWilliams M.P., Gumport R.I., Gardner J.F. Genetic analysis of Escherichia coli integration host factor interactions with its bacteriophage lambda H′ recognition site. J. Bacteriol. 173:1991;609-617.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 609-617
-
-
Lee, E.C.1
MacWilliams, M.P.2
Gumport, R.I.3
Gardner, J.F.4
-
12
-
-
0026541608
-
The isolation and characterization of mutants of the integration host factor (IHF) of Escherichia coli with altered, expanded DNA-binding specificities
-
Lee E.C., Hales L.M., Gumport R.I., Gardner J.F. The isolation and characterization of mutants of the integration host factor (IHF) of Escherichia coli with altered, expanded DNA-binding specificities. EMBO J. 11:1992;305-313.
-
(1992)
EMBO J.
, vol.11
, pp. 305-313
-
-
Lee, E.C.1
Hales, L.M.2
Gumport, R.I.3
Gardner, J.F.4
-
13
-
-
0028587402
-
Mutants of Escherichia coli integration host factor: DNA-binding and recombination properties
-
Hales L.M., Gumport R.I., Gardner J.F. Mutants of Escherichia coli integration host factor: DNA-binding and recombination properties. Biochimie. 76:1994;1030-1040.
-
(1994)
Biochimie
, vol.76
, pp. 1030-1040
-
-
Hales, L.M.1
Gumport, R.I.2
Gardner, J.F.3
-
14
-
-
0034721922
-
Specific recognition of DNA by integration host factor. Glutamic acid 44 of the beta-subunit specifies the discrimination of a T:A from an A:T base pair without directly contacting the DNA
-
Read E.K., Gumport R.I., Gardner J.F. Specific recognition of DNA by integration host factor. Glutamic acid 44 of the beta-subunit specifies the discrimination of a T:A from an A:T base pair without directly contacting the DNA. J. Biol. Chem. 275:2000;33759-33764.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 33759-33764
-
-
Read, E.K.1
Gumport, R.I.2
Gardner, J.F.3
-
15
-
-
0024323026
-
Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay
-
Fried M.G. Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay. Electrophoresis. 10:1989;366-376.
-
(1989)
Electrophoresis
, vol.10
, pp. 366-376
-
-
Fried, M.G.1
-
16
-
-
0026346185
-
Gel retardation
-
Carey J. Gel retardation. Methods Enzymol. 208:1991;103-117.
-
(1991)
Methods Enzymol.
, vol.208
, pp. 103-117
-
-
Carey, J.1
-
17
-
-
0033485813
-
Global structure similarities of intact and nicked DNA complexed with IHF measured in solution by fluorescence resonance energy transfer
-
Lorenz M., Hillisch A., Goodman S.D., Diekmann S. Global structure similarities of intact and nicked DNA complexed with IHF measured in solution by fluorescence resonance energy transfer. Nucl. Acids Res. 27:1999;4619-4625.
-
(1999)
Nucl. Acids Res.
, vol.27
, pp. 4619-4625
-
-
Lorenz, M.1
Hillisch, A.2
Goodman, S.D.3
Diekmann, S.4
-
18
-
-
0027973387
-
Specific photocrosslinking of DNA-protein complexes: Identification of contacts between integration host factor and its target DNA
-
Yang S.W., Nash H.A. Specific photocrosslinking of DNA-protein complexes: identification of contacts between integration host factor and its target DNA. Proc. Natl Acad. Sci. USA. 91:1994;12183-12187.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 12183-12187
-
-
Yang, S.W.1
Nash, H.A.2
-
19
-
-
0028838565
-
The specific binding of Escherichia coli integration host factor involves both major and minor grooves of DNA
-
Wang S., Cosstick R., Gardner J.F., Gumport R.I. The specific binding of Escherichia coli integration host factor involves both major and minor grooves of DNA. Biochemistry. 34:1995;13082-13090.
-
(1995)
Biochemistry
, vol.34
, pp. 13082-13090
-
-
Wang, S.1
Cosstick, R.2
Gardner, J.F.3
Gumport, R.I.4
-
21
-
-
0032530555
-
DNA sequence-dependent deformability deduced from protein-DNA crystal complexes
-
Olson W.K., Gorin A.A., Lu X.-J., Hock L.M., Zhurkin V.B. DNA sequence-dependent deformability deduced from protein-DNA crystal complexes. Proc. Natl Acad. Sci. USA. 95:1998;11163-11168.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 11163-11168
-
-
Olson, W.K.1
Gorin, A.A.2
Lu, X.-J.3
Hock, L.M.4
Zhurkin, V.B.5
-
22
-
-
0032576722
-
Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands
-
White S., Szewczyk J.W., Turner J.M., Baird E.E., Dervan P.B. Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands. Nature. 391:1998;468-471.
-
(1998)
Nature
, vol.391
, pp. 468-471
-
-
White, S.1
Szewczyk, J.W.2
Turner, J.M.3
Baird, E.E.4
Dervan, P.B.5
-
23
-
-
0032475994
-
A structural basis for recognition of A·T and T·A base pairs in the minor groove of B-DNA
-
Kielkopf C.L., White S., Szewczyk J.W., Turner J.M., Baird E.E., Dervan P.B., Rees D.C. A structural basis for recognition of A·T and T·A base pairs in the minor groove of B-DNA. Science. 282:1998;111-115.
-
(1998)
Science
, vol.282
, pp. 111-115
-
-
Kielkopf, C.L.1
White, S.2
Szewczyk, J.W.3
Turner, J.M.4
Baird, E.E.5
Dervan, P.B.6
Rees, D.C.7
-
24
-
-
0028810470
-
Specificity of minor-groove and major-groove interactions in a homeodomain-DNA complex
-
Ades S.E., Sauer R.T. Specificity of minor-groove and major-groove interactions in a homeodomain-DNA complex. Biochemistry. 34:1995;14601-14608.
-
(1995)
Biochemistry
, vol.34
, pp. 14601-14608
-
-
Ades, S.E.1
Sauer, R.T.2
-
25
-
-
0032518220
-
Recognition of DNA structure by 434 repressor
-
Koudelka G.B. Recognition of DNA structure by 434 repressor. Nucl. Acids Res. 26:1998;669-675.
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 669-675
-
-
Koudelka, G.B.1
-
26
-
-
0034665030
-
Direct and indirect readout in mutant Met repressor-operator complexes
-
Garvie V.W., Phillips S.E.V. Direct and indirect readout in mutant Met repressor-operator complexes. Structure. 8:2000;905-914.
-
(2000)
Structure
, vol.8
, pp. 905-914
-
-
Garvie, V.W.1
Phillips, S.E.V.2
-
27
-
-
0038226895
-
DNA sequence and structure: Direct and indirect recognition in protein-DNA binding
-
Steffen N.R., Murphy S.D., Tolleri L., Hatfield G.W., Lathrop R.H. DNA sequence and structure: direct and indirect recognition in protein-DNA binding. Bioinformatics. 18:2002;22S-30S.
-
(2002)
Bioinformatics
, vol.18
-
-
Steffen, N.R.1
Murphy, S.D.2
Tolleri, L.3
Hatfield, G.W.4
Lathrop, R.H.5
-
28
-
-
0035812654
-
Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: A comparative analysis of T-A and A-T steps within A-tracts
-
Mack D.R., Chiu T.K., Dickerson R.E. Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: a comparative analysis of T-A and A-T steps within A-tracts. J. Mol. Biol. 312:2001;1037-1049.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 1037-1049
-
-
Mack, D.R.1
Chiu, T.K.2
Dickerson, R.E.3
-
29
-
-
0035704707
-
Role of DNA sequence in nucleosome stability and dynamics
-
Widom J. Role of DNA sequence in nucleosome stability and dynamics. Q. Rev. Biophys. 34:2001;269-324.
-
(2001)
Q. Rev. Biophys.
, vol.34
, pp. 269-324
-
-
Widom, J.1
-
30
-
-
0036143789
-
Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation
-
Horton N.C., Dorner L.F., Perona J.J. Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation. Nature Struct. Biol. 9:2002;42-47.
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 42-47
-
-
Horton, N.C.1
Dorner, L.F.2
Perona, J.J.3
-
31
-
-
0027504913
-
Crystal structure of a yeast TBP/TATA-box complex
-
Kim Y., Geiger J.H., Hahn S., Sigler P.B. Crystal structure of a yeast TBP/TATA-box complex. Nature. 365:1993;512-520.
-
(1993)
Nature
, vol.365
, pp. 512-520
-
-
Kim, Y.1
Geiger, J.H.2
Hahn, S.3
Sigler, P.B.4
-
32
-
-
0035900557
-
Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: Alteration of DNA binding specificity through alteration of DNA kinking
-
Chen S., Gunasekera A., Zhang X., Kunkel T.A., Ebright R.H., Berman H.M. Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: Alteration of DNA binding specificity through alteration of DNA kinking. J. Mol. Biol. 314:2001;75-82.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 75-82
-
-
Chen, S.1
Gunasekera, A.2
Zhang, X.3
Kunkel, T.A.4
Ebright, R.H.5
Berman, H.M.6
-
33
-
-
0027478518
-
Assembly of the Arc repressor-operator complex: Cooperative interactions between DNA-bound dimers
-
Brown B.M., Sauer R.T. Assembly of the Arc repressor-operator complex: cooperative interactions between DNA-bound dimers. Biochemistry. 32:1993;1354-1363.
-
(1993)
Biochemistry
, vol.32
, pp. 1354-1363
-
-
Brown, B.M.1
Sauer, R.T.2
-
34
-
-
0032478266
-
Changes in solvation during DNA binding and cleavage are critical to altered specificity of the EcoRI endonuclease
-
Robinson C.R., Sligar S.G. Changes in solvation during DNA binding and cleavage are critical to altered specificity of the EcoRI endonuclease. Proc. Natl Acad. Sci. USA. 95:1998;2186-2191.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 2186-2191
-
-
Robinson, C.R.1
Sligar, S.G.2
-
35
-
-
0002452464
-
Oscillation data reduction program
-
L. Sawyer, N. Isaacs, & S. Bailey. Warrington: SERC, Daresbury Laboratory
-
Otwinowski Z. Oscillation data reduction program. Sawyer L., Isaacs N., Bailey S. Data Collection and Processing. 1993;55-62 SERC, Daresbury Laboratory, Warrington.
-
(1993)
Data Collection and Processing
, pp. 55-62
-
-
Otwinowski, Z.1
-
36
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., Kjelgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallog. sect. A. 47:1991;110-119.
-
(1991)
Acta Crystallog. sect. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjelgaard, M.4
-
37
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallog. sect. D. 54:1998;905-921.
-
(1998)
Acta Crystallog. sect. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
-
39
-
-
0034698001
-
A-form conformational motifs in ligand-bound DNA structures.
-
Lu X.-J., Olson W.K. A-form conformational motifs in ligand-bound DNA structures. J. Mol. Biol. 300:2000;819-840.
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 819-840
-
-
Lu, X.-J.1
Olson, W.K.2
|