The archaeal molecular chaperone machine: Peculiarities and paradoxes

Genetics

Volumn 152, Issue 4, 1999, Pages 1277-1283

  Macario, Alberto J L ^a   Conway De Macario, Everly ^a  

^a WADSWORTH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONE; HEAT SHOCK PROTEIN 70;

ARCHAEBACTERIUM; ARTICLE; BACTERIAL GENE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FOLDING; PROTEIN INTERACTION; PROTEIN LOCALIZATION; SPECIES DIFFERENCE;

ARCHAEA; ARCHAEAL PROTEINS; BACTERIAL PROTEINS; ESCHERICHIA COLI PROTEINS; EVOLUTION, MOLECULAR; GENES, ARCHAEAL; HEAT-SHOCK PROTEINS; HSP40 HEAT-SHOCK PROTEINS; HSP70 HEAT-SHOCK PROTEINS; MACROMOLECULAR SUBSTANCES; MOLECULAR CHAPERONES; PROTEIN CONFORMATION; PROTEIN FOLDING;

ACTINOBACTERIA (CLASS); ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA; UNCULTURED ACTINOMYCETE;

EID: 0344500848     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (56)

1. ANDRÄ, S., G. FREY, M. NITSCH, W. BAUMEISTER and K. O. STETTER, 1966 Purification and structural characterization of the thermosome from the hyperthermophilic archaeum Methanopyrus kandleri. FEBS Lett. 379: 127-131.
2. BLATTNER, F. R., G. PLUNKETT III, C. A. BLOCH, N. T. PERNA, V. BURLAND et al., 1997 The complete genome sequence of Escherichia coli K-12. Science 277: 1453-1462.
3. BRANS, A., A. LORIAUX, B. JORIS and J. DUSART, 1996 Cloning and sequencing of the dnaKlocus in Streptomyces coelicolor A3(2). DNA seq. 6: 179-184.
4. BROWN, J. R., and W. F. DOOLITTLE, 1997 Archaea and the prokaryote-to-eukaryote transition. Microbiol. Mol. Biol. Rev. 61: 456-502.
5. BROWN, J. W., C. J. DANIELS and J. N. REEVE, 1989 Gene structure, organization, and expression in archaebacteria. Crit. Rev. Microbiol. 16: 287-338.
6. BUKAU, B., and A. L. HORWICH, 1998 The hsp70 and hsp60 chaperone machines. Cell 92: 351-356.
7. BULT, C. J., O. WHITE, G. J. OLSEN, L. ZHOU, D. FLEISCHMANN et al., 1996 Complete genome sequence of the methanogenic archaeon Methanococcus jannaschii. Science 273: 1058-1073.
8. BUSTARD, K., and R. S. GUPTA, 1997 The sequences of heat shock protein 40 (DnaJ) homologs provide evidence for a close evolutionary relationship between the Deinococcus-Thermus group and cyanobacteria. J. Mol. Evol. 45: 193-205.
9. CLARENS, M., A. J. L. MACARIO and E. CONWAY DE MACARIO, 1995 The archaeal dnaK-dnaJ gene cluster: organization and expression in the methanogen Methanosarcina mazei. J. Mol. Biol. 250: 191-201.
10. COLE, S. T., R. BROSCH, J. PARKHILL, T. GARNIER, C. CHURCHER et al., 1998 Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393: 537-544.
11. CONWAY DE MACARIO, E., C. B. DUGAN and A. J. L. MACARIO, 1994 Identification of a grpE heat-shock gene homolog in the archaeon Methanosarcina mazei. J. Mol. Biol. 240: 95-101.
12. DECKERT, G., P. V. WARREN, T. GAASTERLAND, W. G. YOUNG, A. L. LENOX et al., 1998 The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature 329: 353-358.
13. EATON, T., C. SHEARMAN and M. GASSON, 1993 Cloning and sequence analysis of the dnaK gene region of Lactococcus lactis subsp. lactis. J. Gen. Microbiol. 139: 3253-3264.
14. FORTERRE, P., 1997 Protein versus rRNA: problems in rooting the universal tree of life. ASM News 63: 89-95.
15. GEORGOPOULOS, C., and W. J. WELCH, 1993 Role of the major heat shock proteins as molecular chaperones. Annu. Rev. Cell Biol. 9: 601-634.
16. GLOVER, J. R., and S. LINDQUIST, 1998 Hsp104, Hsp70, and Hsp40: a novel chaperone system that rescues previously aggregated proteins. Cell 94: 73-82.
17. GRIBALDO, S., V. LUMIA, R. CRETI, E. CONWAY DE MACARIO, A. SANANGELANTONI et al., 1999 Occurrence of the hsp70(dnaK) gene among archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein. J. Bacteriol. 181: 434-443.
18. GUPTA, R. S., 1998 Protein phylogenies and signature sequences: a reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes. Microbiol. Mol. Biol. Rev. 62: 1435-1491.
19. GUPTA, R. S., and B. SINGH, 1992 Cloning of HSP70 gene from Halobacterium marismortui: relatedness of archaebacterial HSP70 to its eubacterial homologs and a model for the evolution of the HSP70 gene. J. Bacteriol. 174: 4594-4605.
20. GUPTA, R. S., and B. SINGH, 1994 Phylogenetic analysis of 70 kD heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus. Curr. Biol. 4: 1104-1114.
21. HARTL, F. U., and J. MARTIN, 1995 Molecular chaperones in cellular protein folding. Curr. Opin. Struct. Biol. 5: 92-102.
22. HORST, M., W. OPPLIGER, S. ROSPERT, H-J. SHONFELD, G. SCHATZ et al., 1997 Sequential action of two hsp70 complexes during protein import into mitochondria. EMBO J. 16: 1842-1849.
23. KAWARABAYASI, Y., M. SAWADA, H. HORIKAWA, Y. HAIKAWA, Y. HINO et al., 1998a Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3. DNA Res. 5: 55-75.
24. KAWARABAYASI, Y., M. SAWADA, H. HORIKAWA, Y. HAIKAWA, Y. HINO et al., 1998b Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3 (Supplement). DNA Res. 5 (Suppl.): 147-155.
25. KEDZIERSKA, S., M. STANISZEWSKA, A. WEGRZYN and A. TAYLOR, 1999 The role of DnaK/DnaJ and GroeEL/GroES systems in the removal of endogenous proteins aggregated by heat-shock from Escherichia coli cells. FEBS Lett. 446: 331-337.
26. KLEIN, G., M. ZMIJEWSKI, J. KRZEWSKA, M. CZECZATKA and B. LIPINSKA, 1998 Cloning and characterization of the dnaKheat shock operon of the marine bacterium Vibrio harveyi. Mol. Gen. Genet. 259: 179-189.
27. KLENK, H. P., R. A. CLAYTON, J. F. TOMB, O. WHITE, K. E. NELSON et al., 1997 The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390: 364-370.
28. KLUMPP, M., and W. BAUMEISTER, 1998 The thermosome: archetype of group II chaperonins. FEBS Lett. 430: 73-77.
29. KUBOTA, H., G. HINES and K. WILLISON, 1995 The chaperonin containing t-complex polypeptide 1 (TCP-1). Multisubunit machinery assisting in protein folding and assembly in the eukaryotic cytosol. Eur. J. Biochem. 230: 3-16.
30. LANGE, M., A. J. L. MACARIO, B. K. AHRING and E. CONWAY DE MACARIO, 1997 Heat-shock response in Methanosarcina mazei S-6. Curr. Microbiol. 35: 116-121.
31. MACARIO, A. J. L., and E. CONWAY DE MACARIO, 1997 Stress genes: an introductory overview. Stress 1: 123-134.
32. MACARIO, A. J. L., and E. CONWAY DE MACARIO, 1999 Transcription initiation of stress (heat-shock) genes in archaea, in Microbial Biosystems: New Frontiers, edited by C. R. BELL, P. JOHNSON-GREEN and M. BRYLINSKY. Acadia University Press, Halifax, Nova Scotia, Canada (in press).
33. MACARIO, A. J. L., C. B. DUGAN and E. CONWAY DE MACARIO, 1991 A dnaK homolog in the archaebacterium Methanosarcina mazei S6. Gene 108: 133-137.
34. MACARIO, A. J. L., C. B. DUGAN, M. CLARENS and E. CONWAY DE MACARIO, 1993 dnaJ in archaea. Nucleic Acids Res. 21: 2773.
35. MACARIO, A. J. L., M. LANGE, B. K. AHRING and E. CONWAY DE MACARIO, 1999 Stress genes and proteins in archaea. Microbiol. Mol. Biol. Rev. (in press).
36. MARTIN, W. F., 1996 Is something wrong with the tree of life? Bioessays 18: 523-527.
37. MAYER, M. P., and B. BUKAU, 1998 Hsp70 chaperone systems: diversity of cellular functions and mechanism of action. Biol. Chem. 379: 261-268.
38. NAYLOR, D. J., N. J. HOOGENRAAD and P. B. HØJ, 1996 Isolation and characterization of cDNA encoding rat mitochondrial GrpE, a stress-inducible nucleotide-exchange factor of ubiquitous appearance in mammalian organs. FEBS Lett. 396: 181-188.
39. NAYLOR, D. J., A. P. STINES, N. J. HOOGENRAAD and P. B. HØJ, 1998 Evidence for the existence of distinct mammalian cytosolic, microsomal, and two mitochondrial GrpE-like proteins, the co-chaperones of specific Hsp70 members. J. Biol. Chem. 273: 21169-21177.
40. NELISSEN, B., Y. V. DE PEER, A. WILMOTTE and R. DE WACHTER, 1995 An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences. Mol. Biol. Evol. 12: 1166-1173.
41. NETZER, W. J., and F. U. HARTL, 1998 Protein folding in the cytosol: chaperonin-dependent and independent mechanisms. Trends Biochem. Sci. 23: 68-73.
42. PALMER, D. J., 1997 Organelle genomes: going, going, gone! Science 275: 790-791.
43. PARSELL, D. A., and S. LINDQUIST, 1993 The function of heat shock proteins in stress tolerance: degradation and reactivation of damaged proteins. Annu. Rev. Genet. 27: 437-496.
44. RANSON, N. A., H. E. WHITE and H. R. SAIBIL, 1998 Chaperonins. Biochem. J. 333: 233-242.
45. RENSING, S. A., and U-G. MAIER, 1994 Phylogenetic analysis of the stress-70 protein family. J. Mol. Evol. 39: 80-86.
46. ROMMELAERE, H., M. VAN TROYS, Y. GAO, R. MELKI, N. J. COWAN et al., 1993 Eukaryotic cytosolic chaperonin contains t-complex polypeptide 1 and seven related subunits. Proc. Natl. Acad. Sci. USA 90: 11975-11979.
47. ROMMELAERE, H., M. DE NEVE, R. MELKI, J. VANDEKERCKHOVE and C. AMPE, 1999 The cytosolic class II chaperonin CCT recognizes delineated hydrophobic sequences in its target proteins. Biochemistry 38: 3246-3257.
48. SMITH, D. R., L. A. DOUCHETTE-STAMM, C. DELOUGHERY, H. LEE, J. DUBOIS et al. 1997 Complete genome sequence of Methanobacterium thermoaulotrophicum ΔH: functional analysis and comparative genomics. J. Bacteriol. 179: 7135-7155.
49. TRENT, J. D., E. NIMMESGERN, J. S. WALL, F. U. HARTL and A. L. HORWICH, 1991 A molecular chaperone from a thermophilic archaebacterium is related to the eukaryotic protein t-complex polypeptide-1. Nature 353: 490-493.
50. VAINBERG, I. E., S. A. LEWIS, H. ROMMELAERE, C. AMPE, J. VANDE-KERCKHOVE et al., 1998 Prefoldin, a chaperone that delivers unfolded proteins to cytosolic chaperonin. Cell 93: 863-873.
51. WOESE, C., 1998a The universal ancestor. Proc. Natl. Acad. Sci. USA 95: 6854-6859.
52. WOESE, C. R., 1998b A manifesto for microbial genomics. Curr. Biol. 8: R781-R783.
53. WOESE, C. R., O. KANDLER and M. L. WHEELIS, 1990 Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 87: 4576-4579.
54. XU, Z., and P. B. SIGLER, 1998 GroEL/GroES: structure and function of a two-stroke machine. J. Struct. Biol. 124: 129-141.
55. YOSHIDA, A., Y. NAKANO, Y. YAMASHITA, T. OHO, Y. SHIBATA et al., 1999 A novel dnaK operon from Porphyromonas gingivalis. FEBS Lett. 446: 287-291.
56. ZILLIG, W., P. PALM, H-P. KLENK, D. LANGER, U. HÜUEPHOL et al., 1993 Transcription in archaea, pp. 367-391 in The Biochemistry of Archaea, edited by M. KATES, D. J. KUSHNER and A. T. MATHESON. Elsevier, Amsterdam.