New Insight into the Peroxidase-Hydroxamic Acid Interaction Revealed by the Combination of Spectroscopic and Crystallographic Studies

Biochemistry

Volumn 42, Issue 47, 2003, Pages 14066-14074

  Indiani, Chiara ^a   Santoni, Elisa ^a   Becucci, Maurizio ^b   Boffi, Alberto ^c   Fukuyama, Keiichi ^d   Smulevich, Giulietta ^a  

^a UNIVERSITY OF FLORENCE   (Italy)

^b UNIVERSITY OF FLORENCE   (Italy)

^c SAPIENZA UNIVERSITY OF ROME   (Italy)

^d OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION SPECTROSCOPY; AROMATIC COMPOUNDS; CHEMICAL BONDS; CRYSTAL STRUCTURE; DECOMPOSITION; PEROXIDES; PROTEINS; RAMAN SCATTERING; SINGLE CRYSTALS; TITRATION; X RAY CRYSTALLOGRAPHY;

CRYSTAL PHASES; LIGANDS;

ORGANIC ACIDS;

ARTHROMYCES RAMOSUS PEROXIDASE; BENZOHYDROXAMIC ACID; FUNGAL ENZYME; HYDROXAMIC ACID; SALICYLHYDROXAMIC ACID; UNCLASSIFIED DRUG;

ABSORPTION SPECTROSCOPY; ARTICLE; BINDING AFFINITY; BINDING SITE; COMPLEX FORMATION; CONTROLLED STUDY; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; DATA ANALYSIS; DECOMPOSITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN INTERACTION; RAMAN SPECTROMETRY; TITRIMETRY; X RAY CRYSTALLOGRAPHY;

BINDING SITES; COPRINUS; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; FUNGAL PROTEINS; HYDROXAMIC ACIDS; MACROMOLECULAR SUBSTANCES; MITOSPORIC FUNGI; PEROXIDASES; SALICYLAMIDES; SOLUTIONS; SPECTROPHOTOMETRY, ULTRAVIOLET; SPECTRUM ANALYSIS, RAMAN;

'ARTHROMYCES RAMOSUS';

EID: 0344412953     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi035290l     Document Type: Article

References (44)

1. Henriksen, A., Schuller, D. J., Meno, K., Welinder, K. G., Smith, A. T., and Gajhede, M. (1998) Biochemistry 37, 8054-8060.
2. Smulevich, G., Neri, F., Marzocchi, M. P., and Welinder, K. G. (1996) Biochemistry 35, 10576-10585.
3. Kjalke, M., Andersen, M. B., Schneider, P., Christensen, B., Schfilein, M., and Welinder, K. G. (1991) Biochim. Biophys. Acta 1120, 248.
4. Itakura, H., Oda, Y., and Fukuyama, K. (1997) FEBS Lett. 412, 107-110.
5. Tsukamoto, K., Itakura, H., Sato, K., Fukuyama, K., Miura, S., Takahashi, S., Ikezawa, H., and Hosoya, T. (1999) Biochemistry 38, 12558-12568.
6. Davey, C. A., and Fenna, R. E. (1996) Biochemistry 35, 10967-10973.
7. Schonbaum, G. R. (1973) J. Biol. Chem. 248, 502-511.
8. Teraoka, J., and Kitagawa, T. (1980) J. Phys. Chem. 84, 1928-1935.
9. Kitagawa, T., Hashimoto, S., Teraoka, J., Nakamura, S., Yajima, H., and Hosoya, T. (1983) Biochemistry 22, 2788-2792.
10. Smulevich, G., English, A., Mantini, A. R., and Marzocchi, M. P. (1991) Biochemistry 30, 772-779.
11. Howes, B. D., Rodriguez-Lopez, J. N., Smith, A. T., and Smulevich, G. (1997) Biochemistry 36, 1532-1543.
12. Gupta, R. K., Mildvan, A. S., and Schonbaum, G. R. (1979) Biochem. Biophys. Res. Comm. 89, 1334-1340.
13. deRopp, J. S., Mandal, P., Brauer, S. L., and La Mar, G. N. (1997) J. Am. Chem. Soc. 119, 4732-4739.
14. Smulevich, G., English, A. M., Mantini, A. R., and Marzocchi, M. P. (1991) Biochemistry 30, 772-779.
15. Smulevich, G., Feis, A., Indiani, C., Becucci, M., and Marzocchi, M. P. (1999) J. Biol. Inorg. Chem. 4, 39-47.
16. Indiani, C., Feis, A., Howes, B. D., Marzocchi, M. P., and Smulevich, G. (2000) J. Am. Chem. Soc. 122, 7368-7376.
17. Altose, M. D., Zheng, Y., Dong, J., Palfey, B. A., and Carey, P. R. (2001) Proc. Natl. Acad. Sci. U.S.A. 98, 3006-3011.
18. Smulevich, G. (1998) Biospectroscopy 4, S3-S17.
19. Dalbøge, H., Jensen, E. B., and Welinder, K. G. (1992) Patent application WO 92/16634.
20. Smulevich, G., Feis, A., Focardi, C., and Welinder, K. G. (1994) Biochemistry 33, 15425-15432.
21. Kunishima, N., Fukuyama, K., Wakabayashi, S., Sumida, M., Takaya, M., Shibano, Y., Amachi, T., and Matsubara, H. (1993) Proteins: Struct., Funct., Genet. 15, 216-220.
22. Wariishi, H., Nonaka, D., Jojima, T., Nakamura, N., Naruta, Y., Kubo, S., and Fukuyama, K. (2000) J. Biol. Chem. 275, 32919-32924.
23. Andersen, M. B., Hsuanyu, Y., Welinder, K. G., Schneider, P., and Dunford, H. B. (1991) Acta Chem. Scand. 45, 206-211.
24. Leslie, A. G. W. (1992) Joint CCP4 and ESF-EA CBM Newsletter on Protein Crystallography, Daresbury Laboratory, Warrington, UK.
25. Collaborative Computational Project (1994) Acta Crystallogr. D50, 760-763.
26. Kunishima, N., Amada, F., Fukuyama, K., Kawamoto, M., Matsunaga, T., and Matsubara, H. (1996) FEBS Lett. 378, 291-294.
27. Roussel, A. C. C. (1992) Silicon Graphycs Geometry Directory, Silicon Graphycs, Mountain View, CA.
28. Hamilton, W. C., Rollett, J. S., and Sparks, R. A. (1965) Acta Crystallogr. 18, 129-130.
29. Henry, E. H., and Hofrichter, J. (1992) Methods Enzymol. 210, 129-155.
30. Henriksen, A., Mirza, O., Indiani, C., Teilum, K., Smulevich, G., Welinder, K. G., and Gajhede, M. (2001) Protein Sci. 10, 108-115.
31. Gajhede, M., Schuller, D. J., Henriksen, A., Smith, A. T., and Poulos, T. L. (1997) Nat. Struct. Biol. 4, 1032-1038.
32. Veitch, N. C., Williams, R. J. P., Bone, N. M., Burke, J. F., and Smith, A. T. (1995) Eur. J. Biochem. 233, 650-658.
33. Veitch, N. C., Gilfoyle, D. J., White, C. G., and Smith, A. T. (1996) in Plant peroxidases: Biochemistry and Physiology (Obinger, C., Burner, U., Ebermann, R., Penel, C., and Greppin, H., Eds.) pp 1-6, University of Geneva, Geneva, Switzerland.
34. Veitch, N. C., Gao, Y., Smith, A. T., and White, C. G. (1997) Biochemistry 36, 14751-14761.
35. Aitken, S. M., Turnbull, J. L., Percival, M. D., and English, A. (2001) Biochemistry 40, 13980-13988.
36. Smulevich, G., Feis, A., Indiani, C., Becucci, M., and Marzocchi, M. P. (1999) J. Biol. Inorg. Chem. 4, 39-47.
37. Indiani, C., Feis, A., Howes, B. D., Marzocchi, M. P., and Smulevich, G. (2000) J. Am. Chem. Soc. 122, 7368-7376.
38. Bonamore, A., Farina, A., Gattoni, M., Schininà, E., Bellelli, A., and Boffi, A. (2003) Biochemistry 42, 5792-5801.
39. Choi, S., Spiro, T. G., Langry, K. C., Smith, K. M., Budd, D. L., and La Mar, G. N. (1982) J. Am. Chem. Soc. 104, 4345-4351.
40. Smulevich, G., Feis, A., Focardi, C., Tams, J., and Welinder, K. G. (1994) Biochemistry 33, 15425-15432.
41. Howes, B. D., Schiodt, C. B., Welinder, K. G., Marzocchi, M. P., Ma, J. G., Zhang, J., Shelnutt, J. A., and Smulevich, G. (1999) Biophys. J. 77, 478-492.
42. Smulevich, G., Wang, Y., Mauro, J. M., Wang, J. M., Fishel, L. A., Kraut, J., and Spiro, T. G. (1990) Biochemistry 29, 7174-7180.
43. Wang, J., Mauro, J. M., Edwards, S. L., Oatley, S. J., Fishel, L. A., Ashford, V. A., Xuong, N., and Kraut, J. (1990) Biochemistry 29, 7160-7173.
44. Briinger, A. T. (1992) X-PLOR, version 3.1, Yale University, New Haven, CT.