Escherichia coli genome is composed of two distinct types of nucleotide sequences

Biochemical and Biophysical Research Communications

Volumn 272, Issue 2, 2000, Pages 571-575

  Häring, David ^a   Kypr, Jaroslav ^a  

^a INSTITUTE OF BIOPHYSICS   (Czech Republic)

Author keywords

Escherichia coli; Genome; Mosaic structure; Nucleotide distributions; Pearson correlation coefficient

Indexed keywords

ARTICLE; CLUSTER ANALYSIS; ESCHERICHIA COLI; GENOME; MOSAICISM; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

ESCHERICHIA COLI; NEGIBACTERIA; PROKARYOTA;

EID: 0343090877     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1006/bbrc.2000.2825     Document Type: Article

References (33)

1. Blattner F. R., Plunkett G. 3rd, Bloch C. A., Perna N. T., Burland V., Riley M., Collado-Vides J., Glasner J. D., Rode C. K., Mayhew G. F., Gregor J., Davis N. W., Kirkpatrick H. A., Goeden M. A., Rose D. J., Mau B., Shao Y. Science. 277:1997;1453-1474.
2. Rudd K. E., Humphery-Smith I., Wasinger V. C., Bairoch A. Electrophoresis. 19:1998;536-544.
3. Hinton J. C. Mol. Microbiol. 26:1997;417-422.
4. Labedan B., Riley M. J. Bacteriol. 177:1995;1585-1588.
5. Moxon E. R., Higgins C. F. Nature. 389:1997;120-121.
6. Médigue C., Viari A., Hénaut A., Danchin A. Microbiol. Reviews. 57:1993;623-654.
7. Rudd K. E. Microbiol. Mol. Biol. Review. 62:1998;985-1019.
8. Rudd K. E. TIG. 12:1996;156-157.
9. Thieffry D., Huerta A. M., Perez-Rueda E., Collado-Vides J. BioEssays. 20:1998;433-440.
10. Karp P. D., Paley S. J. Comput. Biol. 3:1996;191-212.
11. Tao H., Bausch C., Richmond C., Blattner F. R., Conway T. J. Bacteriol. 18:1999;6425-6440.
12. Azam T. A., Iwata A., Nishimura A., Ueda S., Ishihama A. J. Bacteriol. 20:1999;6361-6370.
13. Marcotte E. M., Pellegrini M., Ng H.-L., Rice D. W., Yeates T. O., Eisenberg D. Science. 285:1999;751-753.
14. Thieffry D., Salgado H., Huerta A. M., Collado-Vides J. Bioinformatics. 14:1998;391-400.
15. Rychlewski L., Zhang B., Godzik A. Protein Science. 8:1999;614-624.
16. Borodovsky M., McIninch J. D., Koonin E. V., Rudd K. E., Medigue C., Danchin A. Nucleic Acids Res. 23:1995;3554-3562.
17. Snel B., Bork P., Huynen M. A. Nat. Genet. 21:1999;108-110.
18. de Rosa R., Labedan B. Mol. Biol. Evol. 15:1998;17-27.
19. Stoesser G., Tuli M. A., Lopez R., Sterk P. Nucleic Acids Res. 27:1999;18-24.
20. Häring D., Kypr J. J. Biomol. Struct. Dyn. 17:1999;267-273.
21. Häring D., Kypr J. J. Theor. Biol. 201:1999;141-156.
22. Brunk K., Kelly J., Kohavi R. Proceedings of the Third International Conference of Knowledge Discovery and Data Mining. 1997.
23. Kohavi R., Sommerfield D., Dougherty J. Proceedings of the 8th International Conference on Tools with Artificial Intelligence (ICTAI '96). 1996.
24. Kohavi R., Chia-Hsin L. Proceedings of the International Joint Conferences on Artificial Intelligence. 1995.
25. Trifonov E. N. J. Mol. Evol. 38:1994;543-546.
26. Trifonov E. N. J. Mol. Evol. 40:1995;337-342.
27. Trifonov E. N. J. Biomol. Struct. Dyn. 14:1997;449-457.
28. Lawrence J. G., Ochman H. Proc. Natl. Acad. Sci. USA. 95:1998;9413-9417.
29. Jain R., Rivera M. C., Lake J. A. Proc. Natl. Acad. Sci. USA. 96:1999;3801-3806.
30. Martin W. Bioessays. 21:1999;99-104.
31. Mrázek J., Kypr J. Comput. Appl. Biosci. 11:1995;195-199.
32. Kypr J., Mrázek J., Reich J. Biochim. Biophys. Acta. 1009:1989;280-282.
33. Frank G. K., Makeev V. J. J. Biomol. Struct. Dyn. 14:1997;629-639.