Coupled formation of an amidotransferase interdomain ammonia channel and a phosphoribosyltransferase active site

Biochemistry

Volumn 36, Issue 37, 1997, Pages 11061-11068

  Krahn, Joseph M ^a   Kim, Jeong Hyun ^b,d   Burns, Mark R ^c   Parry, Ronald J ^c   Zalkin, Howard ^b   Smith, Janet L ^a  

^a PURDUE UNIVERSITY   (United States)

^b PURDUE UNIVERSITY   (United States)

^c RICE UNIVERSITY   (United States)

^d Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOTRANSFERASE; AMMONIA;

ARTICLE; CATALYSIS; CATION TRANSPORT; COMPLEX FORMATION; COUPLING FACTOR; ENZYME ACTIVATION; ENZYME ACTIVE SITE; ENZYME SUBSTRATE; HYDROLYSIS; NONHUMAN; NUCLEOTIDE METABOLISM; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN FAMILY;

AMIDOPHOSPHORIBOSYLTRANSFERASE; AMMONIA; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; MODELS, CHEMICAL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHOSPHORIBOSYL PYROPHOSPHATE; PROTEIN CONFORMATION;

EID: 0342894815     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9714114     Document Type: Article

References (43)

1. Smith, J. L., Zaluzec, E. J., Wery, J.-P., Niu, L., Switzer, R. L., Zalkin, H., and Satow, Y. (1994) Science 264, 1427-1433.
2. Zalkin, H., and Smith, J. L. (1997) Adv. Enzymol. Relat. Areas Mol. Biol. (in press).
3. Brannigan, J. A., Dodson, G., Duggleby, H. J., Moody, P. C. E., Smith, J. L., Tomchick, D. R., and Murzin, A. G. (1995) Nature 378, 416-419.
4. Smith, J. L. (1995) Biochem. Soc. Trans. 23, 894-898.
5. Isupov, M. N., Obmolova, G., Butterworth, S., Badet-Denisot, M.-A., Badet, B., Polikarpov, I., Littlechild, J. A., and Teplyakov, A. (1996) Structure 4, 801-810.
6. Kim, J. H., Krahn, J. M., Tomchick, D. R., Smith, J. L., and Zalkin, H. (1996) J. Biol. Chem. 271, 15549-15557.
7. Musick, W. D. L. (1981) CRC Crit. Rev. Biochem. 11, 1.
8. Eads, J. C., Ozturk, D., Wexler, T. B., Grubmeyer, C., and Sacchettini, J. C. (1997) Structure 5, 47-58.
9. Scapin, G., Grubmeyer, C., and Sacchettini, J. C. (1994) Biochemistry 33, 1287-1294.
10. Eads, J. C., Scapin, G., Xu, Y., Grubmeyer, C., and Sacchettini, J. C. (1994) Cell 78, 325-334.
11. Somoza, J. R., Chin, M. S., Focia, P. J., Wang, C. C., and Fletterick, R. J. (1996) Biochemistry 35, 7032-7040.
12. Schumacher, M. A., Carter, D., Roos, D. S., Ullman, B., and Brennan, R. G. (1996) Nat. Struct. Biol. 3, 881-887.
13. Henriksen, A., Aghajari, N., Jensen, K. F., and Gajhede, M. (1996) Biochemistry 35, 3803-3809.
14. Vos, S., de Jersey, J., and Martin, J. L. (1997) Biochemistry 36, 4125-4134.
15. Zalkin, H. (1993) Adv. Enzymol. Relat. Areas Mol. Biol. 66, 203-309.
16. Muchmore, C. R. A., Krahn, J. M., Kim, J. H., Zalkin, H., and Smith, J. L. (1997) Protein Sci. (in press).
17. Wyngaarden, J. B. (1972) Curr. Top. Cell. Regul. 5, 135-176.
18. Buchanan, J. M. (1973) Adv. Enzymol. Relat. Areas Mol. Biol. 39, 91-183.
19. Stoker, P. W., O'Leary, M. H., Boehlein, S. K., Schuster, S. M., and Richards, N. G. J. (1996) Biochemistry 35, 3024-3030.
20. Chen, S., Tomchick, D. R., Wolle, D., Hu, P., Smith, J. L., Switzer, R. L., and Zalkin, H. (1997) Biochemistry 36, 10718-10726.
21. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326.
22. Otwinowski, Z. (1993) in Data Collection and Processing, Proceedings of the CCP4 Study Weekend, 29-30 January 1993 (Sawyer, L., Isaacs, N., and Bailey, S., Compilers) pp 56-62, SERC Laboratory, Daresbury, Warrington, England.
23. Navaza, J., and Saludjian, P. (1997) Methods Enzymol. 276, 581-594.
24. Brünger, A. T. (1992) X-PLOR Version 3.1, A System for X-ray Crystallography and NMR, 382 pp, Yale University Press, New Haven and London.
25. Brünger, A. T., Krukowski, A., and Erickson, J. W. (1990) Acta Crystallogr. A46, 585-593.
26. Bolin, J. T., Smith, J. L., and Muchmore, S. W. (1993) Abstracts of the American Crystallographic Association, 51.
27. Jones, T. A., Zou, J.-Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. A47, 110-119.
28. Parry, R. J., Burns, M. R., Jiralerspong, S., and Alemany, L. (1997) Tetrahedron 53, 7077-7088.
29. Kim, J. H., Wolle, D., Haridas, K., Parry, R. J., Smith, J. L., and Zalkin, H. (1995) J. Biol. Chem. 270, 17394-17399.
30. Messenger, L. J., and Zalkin, H. (1979) J. Biol. Chem. 254, 3382-3392.
31. McClard, R. W., Fischer, A. C., Mauldin, S. K., and Jones, M. E. (1984) Bioorg. Chem. 12, 339-348.
32. Scapin, G., Ozturk, D. H., Grubmeyer, C., and Sacchettini, J. C. (1995) Biochemistry 34, 10744-10754.
33. Herzberg, O., and Moult, J. (1991) Proteins: Struct., Funct., Genet. 11, 223-229.
34. Hyde, C. C., Ahmed, S. A., Padlan, E. A., Miles, E. W., and Davies, D. R. (1988) J. Biol. Chem. 263, 17857-17871.
35. Rhee, S., Parris, K. D., Ahmed. S. A., Miles, E. W., and Davies, D. R. (1996) Biochemistry 35, 4211-4221.
36. Ozturk, D. H., Dorfman, R. H., Scapin, G., Sacchettini, J. C., and Grubmeyer, C. (1995) Biochemistry 34, 10764-10770.
37. Goitein, R. K., Chelsky, D., and Parsons, S. M. (1978) J. Biol. Chem. 253, 2963-2971.
38. Bhatia, M. B., Vinitsky, A., and Grubmeyer, C. (1990) Biochemistry 29, 10480-10487.
39. Tao, W., Grubmeyer, C., and Blanchard, J. S. (1996) Biochemistry 35, 14-21.
40. Meyer, E., and Switzer, R. L. (1979) J. Biol. Chem. 254, 5397-5402.
41. Bhatia, M. B., and Grubmeyer, C. (1993) Arch. Biochem. Biophys. 303, 321-325.
42. Rudolph, J., and Stubbe, J. (1995) Biochemistry 34, 2241-2250.
43. Thoden, J. B., Holden, H. M., Wesenberg, G., Raushel, F. M., and Rayment, I. (1997) Biochemistry 36, 6305-6316.