Role of the Inhibitory DNA-Binding Surface of Human TATA-Binding Protein in Recruitment of Human TFIIB Family Members

Molecular and Cellular Biology

Volumn 23, Issue 22, 2003, Pages 8152-8160

  Zhao, Xuemei ^a   Herr, Winship ^a  

^a Simons Center for Quantitative Biology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA DIRECTED RNA POLYMERASE III; GLUTATHIONE TRANSFERASE; HYBRID PROTEIN; MESSENGER RNA; RNA POLYMERASE II; SMALL NUCLEAR RNA; TATA BINDING PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR BRF2; TRANSCRIPTION FACTOR IIB; TRANSFER RNA; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; GEL MOBILITY SHIFT ASSAY; HUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN FAMILY; TATA BOX; TRANSCRIPTION INITIATION;

BINDING SITES; DNA; HUMANS; MACROMOLECULAR SUBSTANCES; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PROMOTER REGIONS (GENETICS); RECOMBINANT FUSION PROTEINS; RNA, SMALL NUCLEAR; TATA BOX; TATA-BOX BINDING PROTEIN; TRANSCRIPTION FACTOR TFIIB; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 0242412327     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.23.22.8152-8160.2003     Document Type: Article

References (42)

1. Bagby, S., S. Kim, E. Maldonado, K. I. Tong, D. Reinberg, and M. Ikura. 1995. Solution structure of the C-terminal core domain of human TFIIB: similarity to cyclin A and interaction with TATA-binding protein. Cell 82:857-867.
2. Bagby, S., T. K. Mal, D. Liu, E. Raddatz, Y. Nakatani, and M. Ikura. 2000. TFIIA-TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP. FEBS Lett. 468:149-154.
3. Bryant, G. O., L. S. Martel, S. K. Burley, and A. J. Berk. 1996. Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo. Genes Dev. 10:2491-2504.
4. Buratowski, S. 1994. The basics of basal transcription by RNA polymerase II. Cell 77:1-3.
5. Cabart, P., and S. Murphy. 2001. BRFU, a TFIIB-like factor, is directly recruited to the TATA-box of polymerase III small nuclear RNA gene promoters through its interaction with TATA-binding protein. J. Biol. Chem. 276:43056-43064.
6. Colbert, T., S. Lee, G. Schimmack, and S. Hahn. 1998. Architecture of protein and DNA contacts within the TFIIIB-DNA complex. Mol. Cell. Biol. 18:1682-1691.
7. Geiger, J. H., S. Hahn, S. Lee, and P. B. Sigler. 1996. Crystal structure of the yeast TFIIA/TBP/DNA complex. Science 272:830-836.
8. Hahn, S., and S. Roberts. 2000. The zinc ribbon domains of the general transcription factors TFIIB and Brf: conserved functional surfaces but different roles in transcription initiation. Genes Dev. 14:719-730.
9. Henry, R. W., V. Mittal, B. Ma, R. Kobayashi, and N. Hernandez. 1998. SNAP19 mediates the assembly of a functional core promoter complex (SNAPc) shared by RNA polymerases II and III. Genes Dev. 12:2664-2672.
10. Hernandez, N. 1993. TBP, a universal eukaryotic transcription factor? Genes Dev. 7:1291-1308.
11. Juo, Z. S., T. K. Chiu, P. M. Leiberman, I. Baikalov, A. J. Berk, and R. E. Dickerson. 1996. How proteins recognize the TATA box. J. Mol. Biol. 261:239-254.
12. Kassavetis, G. A., A. Kumar, E. Ramirez, and E. P. Geiduschek. 1998. Functional and structural organization of Brf, the TFIIB-related component of the RNA polymerase III transcription initiation complex. Mol. Cell. Biol. 18:5587-5599.
13. Kim, J. L., D. B. Nikolov, and S. K. Burley. 1993. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365:520-527.
14. Kim, Y., J. H. Geiger, S. Hahn, and P. B. Sigler. 1993. Crystal structure of a yeast TBP/TATA-box complex. Nature 365:512-520.
15. Kotani, T., T. Miyake, Y. Tsukihashi, A. G. Hinnebusch, Y. Nakatani, M. Kawaichi, and T. Kokubo. 1998. Identification of highly conserved amino-terminal segments of dTAFII230 and yTAFII 145 that are functionally interchangeable for inhibiting TBP-DNA interactions in vitro and in promoting yeast cell growth in vivo. J. Biol. Chem. 273:32254-32264.
16. Lemon, B., and R. Tjian. 2000. Orchestrated response: a symphony of transcription factors for gene control. Genes Dev. 14:2551-2569.
17. Ma, B., and N. Hernandez. 2002. Redundant cooperative interactions for assembly of a human U6 transcription initiation complex. Mol. Cell. Biol. 22:8067-8078.
18. a. Martel, L. S., H. Brown, and A. J. Berk. 2002. Evidence that TAF-TATA box-binding protein interactions are required for activated transcription in mammalian cells. Mol. Cell. Biol. 22:2788-2798.
19. Mital, R., R. Kobayashi, and N. Hernandez. 1996. RNA polymerase III transcription from the human U6 and adenovirus type 2 VAI promoters has different requirements for human BRF, a subunit of human TFIIIB. Mol. Cell. Biol. 16:7031-7042.
20. Mittal, V., and N. Hernandez. 1997. Role for the amino-terminal region of human TB in U6 snRNA transcription. Science 275:1136-1140.
21. Nikolov, D. B., H. Chen, E. D. Halay, A. Hoffman, R. G. Roeder, and S. K. Burley. 1996. Crystal structure of a human TATA box-binding protein/TATA element complex. Proc. Natl. Acad. Sci. USA 93:4862-4867.
22. Nikolov, D. B., H. Chen, E. D. Halay, A. A. Usheva, K. Hisatake, D. K. Lee, R. G. Roeder, and S. K. Burley. 1995. Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature 377:119-128.
23. Orphanides, G., T. Lagrange, and D. Reinberg. 1996. The general transcription factors of RNA polymerase II. Genes Dev. 10:2657-2683.
24. Persinger, J., S. M. Sengupta, and B. Bartholomew. 1999. Spatial organization of the core region of yeast TFIIIB-DNA complexes. Mol. Cell. Biol. 19:5218-5234.
25. Ruppert, S. M., V. McCulloch, M. Meyer, C. Bautista, M. Falkowski, H. G. Stunnenberg, and N. Hernandez. 1996. Monoclonal antibodies directed against the amino-terminal domain of human TBP cross-react with TBP from other species. Hybridoma 15:55-68.
26. Sadowski, C. L., R. W. Henry, S. M. Lobo, and N. Hernandez. 1993. Targeting TBP to a non-TATA box cis-regulatory element: a TBP-containing complex activates transcription from snRNA promoters through the PSE. Genes Dev. 7:1535-1548.
27. Schramm, L., and N. Hernandez. 2002. Recruitment of RNA polymerase III to its target promoters. Genes Dev. 16:2593-2620.
28. Schramm, L., P. S. Pendergrast, Y. Sun, and N. Hernandez. 2000. Different human TFIIIB activities direct RNA polymerase III transcription from TATA-containing and TATA-less promoters. Genes Dev. 14:2650-2663.
29. Shen, Y., G. A. Kassavetis, G. O. Bryant, and A. J. Berk. 1998. Polymerase (Pol) III TATA box-binding protein (TBP)-associated factor Brf binds to a surface on TBP also required for activated Pol II transcription. Mol. Cell. Biol. 18:1692-1700.
30. Tan, S., Y. Hunziker, D. F. Sargent, and T. J. Richmond. 1996. Crystal structure of a yeast TFIIA/TBp/DNA complex. Nature 381:127-151.
31. Tang, H., X. Sun, D. Reinberg, and R. H. Ebright. 1996. Protein-protein interactions in eukaryotic transcription initiation: structure of the preinitiation complex. Proc. Natl. Acad. Sci. USA 93:1119-1124.
32. Tansey, W. P., and W. Herr. 1997. Selective use of TBP and TFIIB revealed by a TATA-TBP-TFIIB array with altered specificity. Science 275:829-831.
33. Teichmann, M., Z. Wang, and R. G. Roeder. 2000. A stable complex of a novel transcription factor IIB-related factor, human TFIlIB50, and associated proteins mediate selective transcription by RNA polymerase III of genes with upstream promoter elements. Proc. Natl. Acad. Sci. USA 97:14200-14205.
34. Timmers, H. T., R. E. Meyers, and P. A. Sharp. 1992. Composition of transcription factor B-TFIID. Proc. Natl. Acad. Sci. USA 89:8140-8144.
35. Tora, L. 2002. A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription. Genes Dev. 16:673-675.
36. Tsai, F. T., and P. B. Sigler. 2000. Structural basis of preinitiation complex assembly on human Pol II promoters. EMBO J. 19:25-36.
37. Wang, Z., and R. G. Roeder. 1995. Structure and function of a human transcription factor TFIIIB subunit that is evolutionarily conserved and contains both TFIIB- and high-mobility-group protein 2-related domains. Proc. Natl. Acad. Sci. USA 92:7026-7030.
38. Willis, I. M. 2002. A universal nomenclature for subunits of the RNA polymerase III transcription initiation factor TFIIIB. Genes Dev. 16:1337-1338.
39. Yoon, J. B., S. Murphy, L. Bai, Z. Wang, and R. G. Roeder. 1995. Proximal sequence element-binding transcription factor (PTF) is a multisubunit complex required for transcription of both RNA polymerase II- and RNA polymerase III-dependent small nuclear RNA genes. Mol. Cell. Biol. 15:2019-2027.
40. Zhao, X., and W. Herr. 2002. A regulated two-step mechanism of TBP binding to DNA: a solvent-exposed surface of TBP inhibits TATA box recognition. Cell 108:615-627.
41. Zhao, X., L. Schramm, N. Hernandez, and W. Herr. 2003. A shared surface of TBP directs RNA polymerase II and III transcription via association with different TFIIB family members. Mol. Cell 11:151-161.
42. Zhu, W., Q. Zeng, C. M. Colangelo, M. Lewis, M. F. Summers, and R. A. Scott. 1996. The N-terminal domain of TFIIB from Pyrococcus furiosus forms a zinc ribbon. Nat. Struct. Biol. 3:122-124.