A shared surface of TBP directs RNA polymerase II and III transcription via association with different TFIIB family members

Molecular Cell

Volumn 11, Issue 1, 2003, Pages 151-161

  Zhao, Xuemei ^a   Schramm, Laura ^a,b,c   Hernandez, Nouria ^a,b   Herr, Winship ^a  

^a Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^c STONY BROOK UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; DNA DIRECTED RNA POLYMERASE III; RNA POLYMERASE II; TATA BINDING PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; HUMAN; HUMAN VERSUS ANIMAL COMPARISON; MODEL; MUTAGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN STRUCTURE; RNA TRANSCRIPTION; SURFACE PROPERTY; TATA BOX; TRANSCRIPTION INITIATION; YEAST;

ANIMALIA; EUKARYOTA;

EID: 0037238961     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(02)00797-9     Document Type: Article

References (48)

1. Bryant G.O., Martel L.S., Burley S.K., Berk A.J. Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo. Genes Dev. 10:1996;2491-2504.
2. Cabart P., Murphy S. BRFU, a TFIIB-like factor, is directly recruited to the TATA-box of polymerase III small nuclear RNA gene promoters through its interaction with TATA-binding protein. J. Biol. Chem. 276:2001;43056-43064.
3. Chambon P., Gissinger F., Kedinger C., Mandel J.L., Meilhac M., Nuret P. Structural and functional properties of three mammalian nuclear DNA-dependent RNA polymerases. Acta Endocrinol. Suppl. 168:1972;222-246.
4. Colbert T., Lee S., Schimmack G., Hahn S. Architecture of protein and DNA contacts within the TFIIIB-DNA complex. Mol. Cell. Biol. 18:1998;1682-1691.
5. Cormack B.P., Struhl K. Regional codon randomization. defining a TATA-binding protein surface required for RNA polymerase III transcription Science. 262:1993;244-248.
6. Dignam J., Lebovitz R., Roeder R. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11:1983;1475-1489.
7. Geiger J.H., Hahn S., Lee S., Sigler P.B. Crystal structure of the yeast TFIIA/TBP/DNA complex. Science. 272:1996;830-836.
8. Hamada M., Huang Y., Lowe T.M., Maraia R.J. Widespread use of TATA elements in the core promoters for RNA polymerases III, II, and I in fission yeast. Mol. Cell. Biol. 21:2001;6870-6881.
9. Henry R.W., Mittal V., Ma B., Kobayashi R., Hernandez N. SNAP19 mediates the assembly of a functional core promoter complex (SNAPc) shared by RNA polymerases II and III. Genes Dev. 12:1998;2664-2672.
10. Hernandez N. TBP, a universal eukaryotic transcription factor? Genes Dev. 7:1993;1291-1308.
11. Huet J., Conesa C., Manaud N., Chaussivert N., Sentenac A. Interactions between yeast TFIIIB components. Nucleic Acids Res. 22:1994;3433-3439.
12. Joazeiro C.A., Kassavetis G.A., Geiduschek E.P. Identical components of yeast transcription factor IIIB are required and sufficient for transcription of TATA box-containing and TATA-less genes. Mol. Cell. Biol. 14:1994;2798-2808.
13. Juo Z.S., Chiu T.K., Leiberman P.M., Baikalov I., Berk A.J., Dickerson R.E. How proteins recognize the TATA box. J. Mol. Biol. 261:1996;239-254.
14. Kassavetis G.A., Kumar A., Ramirez E., Geiduschek E.P. Functional and structural organization of Brf, the TFIIB-related component of the RNA polymerase III transcription initiation complex. Mol. Cell. Biol. 18:1998;5587-5599.
15. Keaveney M., Berkenstam A., Feigenbutz M., Vriend G., Stunnenberg H.G. Residues in the TATA-binding protein required to mediate a transcriptional response to retinoic acid in EC cells. Nature. 365:1993;562-566.
16. Kim J.L., Nikolov D.B., Burley S.K. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature. 365:1993;520-527. a.
17. Kim Y., Geiger J.H., Hahn S., Sigler P.B. Crystal structure of a yeast TBP/TATA-box complex. Nature. 365:1993;512-520. b.
18. Kim T.K., Hashimoto S., Kelleher R.J. 3rd, Flanagan P.M., Kornberg R.D., Horikoshi M., Roeder R.G. Effects of activation-defective TBP mutations on transcription initiation in yeast. Nature. 369:1994;252-255.
19. Kuhlman T.C., Cho H., Reinberg D., Hernandez N. The general transcription factors IIA, IIB, IIF, and IIE are required for RNA polymerase II transcription from the human U1 small nuclear RNA promoter. Mol. Cell. Biol. 19:1999;2130-2141.
20. Lemon B., Tjian R. Orchestrated response. a symphony of transcription factors for gene control Genes Dev. 14:2000;2551-2569.
21. Lobo S.M., Hernandez N. A 7 bp mutation converts a human RNA polymerase II snRNA promoter into an RNA polymerase III promoter. Cell. 58:1989;55-67.
22. Ma B., Hernandez N. Reduandant cooperative interactions for assembly of a human U6 transcription initiation complex. Mol. Cell. Biol. 22:2002;8067-8078.
23. Maroney P., Hannon G., Nilsen T. Transcription and cap trimethylation of a nematode spliced leader RNA in a cell-free system. Proc. Natl. Acad. Sci. USA. 87:1990;709-713.
24. Martinez E., Zhou Q., L'Etoile N.D., Oelgeschlager T., Berk A.J., Roeder R.G. Core promoter-specific function of a mutant transcription factor TFIID defective in TATA-box binding. Proc. Natl. Acad. Sci. USA. 92:1995;11864-11868.
25. Mital R., Kobayashi R., Hernandez N. RNA polymerase III transcription from the human U6 and adenovirus type 2 VAI promoters has different requirements for human BRF, a subunit of human TFIIIB. Mol. Cell. Biol. 16:1996;7031-7042.
26. Mittal V., Hernandez N. Role for the amino-terminal region of human TBP in U6 snRNA transcription. Science. 275:1997;1136-1140.
27. Nikolov D.B., Hu S.H., Lin J., Gasch A., Hoffmann A., Horikoshi M., Chua N.H., Roeder R.G., Burley S.K. Crystal structure of TFIID TATA-box binding protein. Nature. 360:1992;40-46.
28. Nikolov D.B., Chen H., Halay E.D., Usheva A.A., Hisatake K., Lee D.K., Roeder R.G., Burley S.K. Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature. 377:1995;119-128.
29. Nikolov D.B., Chen H., Halay E.D., Hoffman A., Roeder R.G., Burley S.K. Crystal structure of a human TATA box-binding protein/TATA element complex. Proc. Natl. Acad. Sci. USA. 93:1996;4862-4867.
30. Orphanides G., Lagrange T., Reinberg D. The general transcription factors of RNA polymerase II. Genes Dev. 10:1996;2657-2683.
31. Roeder R.G., Rutter W.J. Multiple forms of DNA-dependent RNA polymerase in eukaryotic organisms. Nature. 224:1969;234-237.
32. Ruppert S.M., McCulloch V., Meyer M., Bautista C., Falkowski M., Stunnenberg H.G., Hernandez N. Monoclonal antibodies directed against the amino-terminal domain of human TBP cross-react with TBP from other species. Hybridoma. 15:1996;55-68.
33. Sadowski C.L., Henry R.W., Lobo S.M., Hernandez N. Targeting TBP to a non-TATA box cis-regulatory element. a TBP-containing complex activates transcription from snRNA promoters through the PSE Genes Dev. 7:1993;1535-1548.
34. Schramm L., Hernandez N. Recruitment of RNA polymerase III to its target promoters. Genes Dev. 16:2002;2593-2620.
35. Schramm L., Pendergrast P.S., Sun Y., Hernandez N. Different human TFIIIB activities direct RNA polymerase III transcription from TATA-containing and TATA-less promoters. Genes Dev. 14:2000;2650-2663.
36. Shen Y., Kassavetis G.A., Bryant G.O., Berk A.J. Polymerase (Pol) III TATA box-binding protein (TBP)-associated factor Brf binds to a surface on TBP also required for activated Pol II transcription. Mol. Cell. Biol. 18:1998;1692-1700.
37. Strubin M., Struhl K. Yeast and human TFIID with altered DNA-binding specificity for TATA elements. Cell. 68:1992;721-730.
38. Tan S., Hunziker Y., Sargent D.F., Richmond T.J. Crystal structure of a yeast TFIIA/TBP/DNA complex. Nature. 381:1996;127-151.
39. Tang H., Sun X., Reinberg D., Ebright R.H. Protein-protein interactions in eukaryotic transcription initiation. structure of the preinitiation complex Proc. Natl. Acad. Sci. USA. 93:1996;1119-1124.
40. Tansey W.P., Herr W. The ability to associate with activation domains in vitro is not required for the TATA box-binding protein to support activated transcription in vivo. Proc. Natl. Acad. Sci. USA. 92:1995;10550-10554.
41. Tansey W.P., Herr W. Selective use of TBP and TFIIB revealed by a TATA-TBP-TFIIB array with altered specificity. Science. 275:1997;829-831.
42. Tansey W.P., Ruppert S., Tjian R., Herr W. Multiple regions of TBP participate in the response to transcriptional activators in vivo. Genes Dev. 8:1994;2756-2769.
43. Teichmann M., Wang Z., Roeder R.G. A stable complex of a novel transcription factor IIB- related factor, human TFIIIB50, and associated proteins mediate selective transcription by RNA polymerase III of genes with upstream promoter elements. Proc. Natl. Acad. Sci. USA. 97:2000;14200-14205.
44. Tsai F.T., Sigler P.B. Structural basis of preinitiation complex assembly on human pol II promoters. EMBO J. 19:2000;25-36.
45. Wang Z., Roeder R.G. Structure and function of a human transcription factor TFIIIB subunit that is evolutionarily conserved and contains both TFIIB- and high-mobility-group protein 2-related domains. Proc. Natl. Acad. Sci. USA. 92:1995;7026-7030.
46. Willis I.M. A universal nomenclature for subunits of the RNA polymerase III transcription initiation factor TFIIIB. Genes Dev. 16:2002;1337-1338.
47. Yoon J.B., Murphy S., Bai L., Wang Z., Roeder R.G. Proximal sequence element-binding transcription factor (PTF) is a multisubunit complex required for transcription of both RNA polymerase II- and RNA polymerase III-dependent small nuclear RNA genes. Mol. Cell. Biol. 15:1995;2019-2027.
48. Zhao X., Herr W. A regulated two-step mechanism of TBP binding to DNA. A solvent-exposed surface of TBP inhibits TATA box recognition Cell. 108:2002;615-627.