An Essential Role for Aspartate 264 in Catalysis by tRNA-Guanine Transglycosylase from Escherichia coli

Journal of Biological Chemistry

Volumn 278, Issue 43, 2003, Pages 42369-42376

  Kittendorf, Jeffrey D ^a   Sgraja, Tanja ^b   Reuter, Klaus ^b   Klebe, Gerhard ^b   Garcia, George A ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

^b PHILIPPS UNIVERSITY MARBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; ENZYMES; ESCHERICHIA COLI; PROTONS; RNA;

WOBBLE POSITIONS;

AMINO ACIDS;

ALANINE; ASPARAGINE; ASPARTIC ACID; BASE; GLUTAMIC ACID; GLUTAMINE; GLYCOSYLTRANSFERASE; GUANINE; HETEROCYCLIC COMPOUND; HISTIDINE; HYDROXYLAMINE; LYSINE; MUTANT PROTEIN; PROTON; QUEUINE; QUEUINE TRANSFER RIBONUCLEIC ACID RIBOSYLTRANSFERASE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; CATALYST; COMPLEX FORMATION; COVALENT BOND; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTON TRANSPORT; SITE DIRECTED MUTAGENESIS; STRUCTURE ANALYSIS; ZYMOMONAS MOBILIS;

AMINO ACID SUBSTITUTION; ASPARTIC ACID; BINDING SITES; CATALYSIS; CRYSTALLOGRAPHY, X-RAY; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GUANINE; MOLECULAR STRUCTURE; MUTAGENESIS, SITE-DIRECTED; PENTOSYLTRANSFERASES; PROTONS;

ESCHERICHIA COLI; GARCIA; NEGIBACTERIA; PROKARYOTA; ZYMOMONAS MOBILIS;

EID: 0142149105     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M304323200     Document Type: Article

References (41)

1. Harada, F., and Nishimura, S. (1972) Biochemistry 11, 301-308
2. Tsang, T. H., Buck, M., and Ames, B. N. (1983) Biochim. Biophys. Acta 741, 180-196
3. Watanabe, M., Matsuo, M., Tanaka, S., Akimoto, H., Asahi, S., Nishimura, S., Katze, J. R., Hashizume, T., Crain, P. F., McCloskey, J. A., and Okada, N. (1997) J. Biol. Chem. 272, 20146-20151
4. Bai, Y., Fox, D. T., Lacy, J. A., Van Lanen, S. G., and Iwata -Reuyl, D. (2000) J. Biol. Chem. 275, 28731-28738
5. Watanabe, M., Nameki, N., Matsuo-Takasaki, M., Nishimura, S., and Okada, N. (2001) J. Biol. Chem. 276, 2387-2394
6. Okada, N., Noguchi, S., Kasai, H., Shindo-Okada, N., Ohgi, T., Goto, T., and Nishimura, S. (1979) J. Biol. Chem. 254, 3067-3073
7. Frey, B., McCloskey, J., Kersten, W., and Kersten, H. (1988) J. Bacteriol. 170, 2078-2082
8. Slany, R. K., Bosl, M., and Kersten, H. (1994) Biochimie (Paris) 76, 389-393
9. Durand, J. M., Okada, N., Tobe, T., Watarai, M., Fukuda, I., Suzuki, T., Nakata, N., Komatsu, K., Yoshikawa, M., and Sasakawa, C. (1994) J. Bacteriol. 176, 4627-4634
10. Durand, J. M. B., Björk, G. R., Kuwae, A., Yoshikawa, M., and Sasakawa, C. (1997) J. Bacteriol. 179, 5777-5782
11. Grädler, U., Gerber, H. D., Goodenough-Lashua, D. M., Garcia, G. A., Ficner, R., Reuter, K., Stubbs, M. T., and Klebe, G. (2001) J. Mol. Biol. 306, 455-467
12. Brenk, R., Naerum, L., Graedler, U., Gerber, H.-D., Sohn, C., Garcia, G. A., Reuter, K., Stubbs, M. T., and Klebe, G. (2003) J. Med. Chem. 46, 1133-1143
13. Romier, C., Reuter, K., Suck, D., and Ficner, R. (1996) EMBO J. 15, 2850-2857
14. Kittendorf, J. D., Barcomb, L. M., Nonekowski, S. T., and Garcia, G. A. (2001) Biochemistry 40, 14123-14133
15. Romier, C., Reuter, K., Suck, D., and Ficner, R. (1996) Biochemistry 35, 15734-15739
16. Goodenough-Lashua, D. M., and Garcia, G. A. (2003) Bioorg. Chem. 31, 331-344
17. Grodberg, J., and Dunn, J. J. (1988) J. Bacteriol. 170, 1245-1253
18. Curnow, A. W., Kung, F. L., Koch, K. A., and Garcia, G. A. (1993) Biochemistry 32, 5239-5246
19. Nonekowski, S. T., Kung, F. L., and Garcia, G. A. (2002) J. Biol. Chem. 277, 7178-7182
20. Curnow, A. W., and Garcia, G. A. (1995) J. Biol. Chem. 270, 17264-17267
21. Kung, F. L., Nonekowski, S., and Garcia, G. A. (2000) RNA (N. Y.) 6, 233-244
22. Grädler, U., Ficner, R., Garcia, G. A., Stubbs, M. T., Klebe, G., and Reuter, K. (1999) FEBS Lett. 454, 142-146
23. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
24. Brünger, A., Adams, P., Clore, G., DeLano, W., Gros, P., Grosse-Kunstleve, R., Jiang, J., Kuszewski, J., Nilges, M., Pannu, N., Read, R., Rice, L., Simonson, T., and Warren, G. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
25. Jones, T. A., and Kjeldgaard, M. (1997) Methods Enzymol. 277, 173-208
26. Hoops, G. C., Townsend, L. B., and Garcia, G., A. (1995) Biochemistry 34, 15381-15387
27. Hoops, G. C., Park, J., Garcia, G. A., and Townsend, L. B. (1996) J. Heterocyclic Chem. 33, 767-781
28. Garcia, G. A., and Chong, S. R. (1997) J. Protein Chem. 16, 11-17
29. Chaparian, M. G., and Evans, D. R. (1991) J Biol. Chem. 266, 3387-3395
30. Schnizer, H. G., Boehlein, S. K., Stewart, J. D., Richards, N. G., and Schuster, S. M. (1999) Biochemistry 38, 3677-3682
31. Xiong, H., and Pegg, A. E. (1999) J. Biol. Chem. 274, 35059-35066
32. Short, S. A., Armstrong, S. R., Ealick, S. E., and Porter, D. J. T. (1996) J. Biol. Chem. 271, 4978-4987
33. Xu, Y., and Grubmeyer, C. (1998) Biochemistry 37, 4114-4124
34. Wang, Q., Trimbur, D., Graham, R., Warren, R. A., and Withers, S. G. (1995) Biochemistry 34, 14554-14562
35. Miao, S., Ziser, L., Aebersold, R., and Withers, S. G. (1994) Biochemistry 33, 7029-7032
36. MacLeod, A. M., Lindhorst, T., Withers, S. G., and Warren, R. A. (1994) Biochemistry 33, 6371-6376
37. McCarter, J. D., and Withers, S. G. (1996) J. Biol. Chem. 271, 6889-6894
38. Vocadlo, D. J., MacKenzie, L. F., He, S., Zeikus, G. J., and Withers, S. G. (1998) Biochem. J. 335, 449-455
39. Wong, A. W., He, S., Grubb, J. H., Sly, W. S., and Withers, S. G. (1998) J. Biol. Chem. 273, 34057-34062
40. Zechel, D. L., He, S., Dupont, C., and Withers, S. G. (1998) Biochem. J. 336, 139-145
41. Vocadlo, D. J., Mayer, C., He, S. M., and Withers, S. G. (2000) Biochemistry 39, 117-126