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Volumn 57, Issue 4, 2003, Pages 397-407

The Peroxidase Gene Family in Plants: A Phylogenetic Overview

Author keywords

Arabidopsis thaliana; Class III peroxidases; Phylogenies; Plant kingdom

Indexed keywords

PEROXIDASE;

EID: 0142075823     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-003-2489-3     Document Type: Review
Times cited : (122)

References (49)
  • 2
    • 0033621284 scopus 로고    scopus 로고
    • A large scale structural analysis of cDNAs in a unicellular green alga, Chlamydomonas reinhardtii. I. Generation of 3433 non-redundant expressed sequence tags
    • Asamizu E, Nakamura Y, Sato S, Fukuzawa H, Tabata S (1999) A large scale structural analysis of cDNAs in a unicellular green alga, Chlamydomonas reinhardtii. I. Generation of 3433 non-redundant expressed sequence tags. DNA Res 6:369-373
    • (1999) DNA Res , vol.6 , pp. 369-373
    • Asamizu, E.1    Nakamura, Y.2    Sato, S.3    Fukuzawa, H.4    Tabata, S.5
  • 3
    • 0031008399 scopus 로고    scopus 로고
    • A natural classification of the basic helix-loop-helix class of transcription factors
    • Atchley WR, Fitch WM (1997) A natural classification of the basic helix-loop-helix class of transcription factors. Proc Natl Acad Sci USA 94:5172-5176
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 5172-5176
    • Atchley, W.R.1    Fitch, W.M.2
  • 4
    • 0036008769 scopus 로고    scopus 로고
    • Comparing Arabidopsis to other flowering plants
    • Barnes S (2000) Comparing Arabidopsis to other flowering plants. Curr Opin Plant Biol 5:128-133
    • (2000) Curr Opin Plant Biol , vol.5 , pp. 128-133
    • Barnes, S.1
  • 6
    • 0036009936 scopus 로고    scopus 로고
    • Characterization of a Pinus pinaster cDNA encoding an auxin up-regulated putative peroxidase in roots
    • Charvet-Candela V, Hitchin S, Reddy MS, Cournoyer B, Marmeisse R, Gay G (2002) Characterization of a Pinus pinaster cDNA encoding an auxin up-regulated putative peroxidase in roots. Tree Physiol 22:231-238
    • (2002) Tree Physiol , vol.22 , pp. 231-238
    • Charvet-Candela, V.1    Hitchin, S.2    Reddy, M.S.3    Cournoyer, B.4    Marmeisse, R.5    Gay, G.6
  • 7
    • 0034903865 scopus 로고    scopus 로고
    • Differential induction of two potato genes, Stprx2 and StNAC, in response to infection by Phytophthora infestans and to wounding
    • Collinge M, Boller T (2001) Differential induction of two potato genes, Stprx2 and StNAC, in response to infection by Phytophthora infestans and to wounding. Plant Mol Biol 46:521-529
    • (2001) Plant Mol Biol , vol.46 , pp. 521-529
    • Collinge, M.1    Boller, T.2
  • 8
    • 0032826401 scopus 로고    scopus 로고
    • Detecting and characterizing gene conversions between multigene family members
    • Drouin G, Prat F, Ell M, Clarke GD (1999) Detecting and characterizing gene conversions between multigene family members. Mol Biol Evol 16:1369-1390
    • (1999) Mol Biol Evol , vol.16 , pp. 1369-1390
    • Drouin, G.1    Prat, F.2    Ell, M.3    Clarke, G.D.4
  • 9
    • 0031976258 scopus 로고    scopus 로고
    • Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis
    • Eisen JA (1998) Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. Genome Res 8:163-167
    • (1998) Genome Res , vol.8 , pp. 163-167
    • Eisen, J.A.1
  • 10
    • 12444308296 scopus 로고    scopus 로고
    • Department of Genetics, University of Washington, Seattle
    • Felsenstein J (2001) PHYLIP v3.6. Department of Genetics, University of Washington, Seattle
    • (2001) PHYLIP v3.6
    • Felsenstein, J.1
  • 11
    • 0034808429 scopus 로고    scopus 로고
    • Isolation of the first putative peroxidase cDNA from a conifer and the local and systemic accumulation of related proteins upon pathogen infection
    • Fossdal CG, Sharma P, Lonneborg A (2001) Isolation of the first putative peroxidase cDNA from a conifer and the local and systemic accumulation of related proteins upon pathogen infection. Plant Mol Biol 47:423-435
    • (2001) Plant Mol Biol , vol.47 , pp. 423-435
    • Fossdal, C.G.1    Sharma, P.2    Lonneborg, A.3
  • 14
    • 0032474438 scopus 로고    scopus 로고
    • Structural interactions between horseradish peroxidase C and the substrate benzhydroxamic acid determined by X-ray crystallography
    • Henriksen A, Schuller DJ, Meno K, Welinder KG, Smith AT, Gajhede M (1998b) Structural interactions between horseradish peroxidase C and the substrate benzhydroxamic acid determined by X-ray crystallography. Biochemistry 37:8054-8060
    • (1998) Biochemistry , vol.37 , pp. 8054-8060
    • Henriksen, A.1    Schuller, D.J.2    Meno, K.3    Welinder, K.G.4    Smith, A.T.5    Gajhede, M.6
  • 15
    • 0031893286 scopus 로고    scopus 로고
    • Structure of barley grain peroxidase refined at 1.9-A resolution. A plant peroxidase reversibly inactivated at neutral pH
    • Henriksen A, Welinder KG, Gajhede M (1998a) Structure of barley grain peroxidase refined at 1.9-A resolution. A plant peroxidase reversibly inactivated at neutral pH. J Biol Chem 273:2241-2248
    • (1998) J Biol Chem , vol.273 , pp. 2241-2248
    • Henriksen, A.1    Welinder, K.G.2    Gajhede, M.3
  • 16
    • 0035100890 scopus 로고    scopus 로고
    • Structure of soybean seed coat peroxidase: A plant peroxidase with unusual stability and haem-apoprotein interactions
    • Henriksen A, Mirza O, Indiana C, Teilum K., Smulevich G, Welinder K, Gajhede M (2001) Structure of soybean seed coat peroxidase: A plant peroxidase with unusual stability and haem-apoprotein interactions. Protein Sci 10:108-115
    • (2001) Protein Sci , vol.10 , pp. 108-115
    • Henriksen, A.1    Mirza, O.2    Indiana, C.3    Teilum, K.4    Smulevich, G.5    Welinder, K.6    Gajhede, M.7
  • 19
    • 0030773115 scopus 로고    scopus 로고
    • From sequence analysis of three novel ascorbate peroxidases from Arabidopsis thaliana to structure, function and evolution of seven types of ascorbate peroxidase
    • Jespersen HM, Kjærsgård IV, Østergaard L, Welinder KG (1997) From sequence analysis of three novel ascorbate peroxidases from Arabidopsis thaliana to structure, function and evolution of seven types of ascorbate peroxidase. Biochem J 326:305-310
    • (1997) Biochem J , vol.326 , pp. 305-310
    • Jespersen, H.M.1    Kjærsgård, I.V.2    Østergaard, L.3    Welinder, K.G.4
  • 20
    • 0032799551 scopus 로고    scopus 로고
    • Molecular characterization of cDNAs for two anionic peroxidases from suspension cultures of sweet potato
    • Kim KY, Huh GH, Lee HS, Kwon SY, Hur Y, Kwak SS (1999) Molecular characterization of cDNAs for two anionic peroxidases from suspension cultures of sweet potato. Mol Gen Genet 261:941-947
    • (1999) Mol Gen Genet , vol.261 , pp. 941-947
    • Kim, K.Y.1    Huh, G.H.2    Lee, H.S.3    Kwon, S.Y.4    Hur, Y.5    Kwak, S.S.6
  • 21
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
    • Kishino H, Hasegawa M (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. J Mol Evol 29:170-179
    • (1989) J Mol Evol , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 22
    • 0031106118 scopus 로고    scopus 로고
    • Sequence and RT-PCR expression analysis of two peroxidases from Arabidopsis thaliana belonging to a novel evolutionary branch of plant peroxidases
    • Kjærsgård IV, Jespersen HM, Rasmussen SK, Welinder KG (1997) Sequence and RT-PCR expression analysis of two peroxidases from Arabidopsis thaliana belonging to a novel evolutionary branch of plant peroxidases. Plant Mol Biol 33:699-708
    • (1997) Plant Mol Biol , vol.33 , pp. 699-708
    • Kjærsgård, I.V.1    Jespersen, H.M.2    Rasmussen, S.K.3    Welinder, K.G.4
  • 23
    • 0027473027 scopus 로고
    • Genomic DNA structure of a gene encoding cytosolic ascorbate peroxidase from Arabidopsis thaliana
    • Kubo A, Saji H, Tanaka K, Kondo N (1993) Genomic DNA structure of a gene encoding cytosolic ascorbate peroxidase from Arabidopsis thaliana. FEBS Lett 315:313-317
    • (1993) FEBS Lett , vol.315 , pp. 313-317
    • Kubo, A.1    Saji, H.2    Tanaka, K.3    Kondo, N.4
  • 24
    • 0003421005 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland
    • Li WS (1997). Molecular evolution. Sinauer Associates, Sunderland
    • (1997) Molecular Evolution
    • Li, W.S.1
  • 26
    • 0032899764 scopus 로고    scopus 로고
    • A new ordinal classification of the flowering plants
    • Nyffeler R (1999) A new ordinal classification of the flowering plants. Trends Ecol Evol 14:168-170
    • (1999) Trends Ecol Evol , vol.14 , pp. 168-170
    • Nyffeler, R.1
  • 28
    • 0033671519 scopus 로고    scopus 로고
    • Arabidopsis ATP A2 peroxidase. Expression and high-resolution structure of a plant peroxidase with implications for lignification
    • Østergaard L, Teilum K, Mirza O, Mattsson O, Petersen M, Welinder KG, et al. (2000) Arabidopsis ATP A2 peroxidase. Expression and high-resolution structure of a plant peroxidase with implications for lignification. Plant Mol Biol 44:231-243
    • (2000) Plant Mol Biol , vol.44 , pp. 231-243
    • Østergaard, L.1    Teilum, K.2    Mirza, O.3    Mattsson, O.4    Petersen, M.5    Welinder, K.G.6
  • 29
    • 0031737821 scopus 로고    scopus 로고
    • How good are deep phylogenetic trees?
    • Philippe H, Laurent J (1998) How good are deep phylogenetic trees? Curr Opin Genet Dev 8:616-623
    • (1998) Curr Opin Genet Dev , vol.8 , pp. 616-623
    • Philippe, H.1    Laurent, J.2
  • 30
    • 0032996560 scopus 로고    scopus 로고
    • Phylogeny of early land plants: Insights from genes and genomes
    • Qiu YL, Palmer JD (1999) Phylogeny of early land plants: Insights from genes and genomes. Trends Plant Sci 4:26-30
    • (1999) Trends Plant Sci , vol.4 , pp. 26-30
    • Qiu, Y.L.1    Palmer, J.D.2
  • 31
    • 0033965855 scopus 로고    scopus 로고
    • The TIGR gene indices: Reconstruction and representation of expressed gene sequences
    • Quackenbush J, Liang F, Holt I, Pertea G, Upton J (2000) The TIGR gene indices: Reconstruction and representation of expressed gene sequences. Nucleic Acids Res 28:141-145
    • (2000) Nucleic Acids Res , vol.28 , pp. 141-145
    • Quackenbush, J.1    Liang, F.2    Holt, I.3    Pertea, G.4    Upton, J.5
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining melhod: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining melhod: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 0028239209 scopus 로고
    • Chloroplast and nuclear gene sequences indicate late Pennsylvanian time for the last common ancestor of extant seed plants
    • Savard L, Li P, Strauss SH, Chase MW, Michaud M, Bousquet J (1994) Chloroplast and nuclear gene sequences indicate late Pennsylvanian time for the last common ancestor of extant seed plants. Proc Natl Acad Sci USA 91:5163-5167
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 5163-5167
    • Savard, L.1    Li, P.2    Strauss, S.H.3    Chase, M.W.4    Michaud, M.5    Bousquet, J.6
  • 34
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • Sawyer S (1989) Statistical tests for detecting gene conversion. Mol Biol Evol 6:526-538
    • (1989) Mol Biol Evol , vol.6 , pp. 526-538
    • Sawyer, S.1
  • 36
    • 0032042908 scopus 로고    scopus 로고
    • Substrate binding and catalysis in heme peroxidases
    • Smith AT, Veitch NC (1998) Substrate binding and catalysis in heme peroxidases. Curr Opin Chem Biol 2:269-278
    • (1998) Curr Opin Chem Biol , vol.2 , pp. 269-278
    • Smith, A.T.1    Veitch, N.C.2
  • 37
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
    • Strimmer K, von Haeseler A (1996) Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964-969
    • (1996) Mol Biol Evol , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 38
    • 0035165039 scopus 로고    scopus 로고
    • Scots pine expresses short-root-specific peroxidases during development
    • Tarkka MT, Nyman TA, Kalkkinen N, Raudaskoski M (2001) Scots pine expresses short-root-specific peroxidases during development. Eur J Biochem 268:86-92
    • (2001) Eur J Biochem , vol.268 , pp. 86-92
    • Tarkka, M.T.1    Nyman, T.A.2    Kalkkinen, N.3    Raudaskoski, M.4
  • 39
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative (2000) Analysis of the genome of the flowering plant Arabidopsis thaliana. Nature 408:796-815
    • (2000) Nature , vol.408 , pp. 796-815
  • 40
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 41
    • 0033168097 scopus 로고    scopus 로고
    • A comprehensive comparison of multiple sequence alignment programs
    • Thompson JD, Plewniak F, Poch O (1999) A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res 27:2682-2690
    • (1999) Nucleic Acids Res , vol.27 , pp. 2682-2690
    • Thompson, J.D.1    Plewniak, F.2    Poch, O.3
  • 42
    • 0034255358 scopus 로고    scopus 로고
    • DbClustal: Rapid and reliable global multiple alignments of protein sequences detected by database searches
    • Thompson JD, Plewniak F, Thierry J, Poch O (2000) DbClustal: Rapid and reliable global multiple alignments of protein sequences detected by database searches. Nucleic Acids Res 28:2919-2926
    • (2000) Nucleic Acids Res , vol.28 , pp. 2919-2926
    • Thompson, J.D.1    Plewniak, F.2    Thierry, J.3    Poch, O.4
  • 43
    • 0035824873 scopus 로고    scopus 로고
    • Towards a reliable objective function for multiple sequence alignments
    • Thompson JD, Plewniak F, Ripp R, Thierry JC, Poch O (2001) Towards a reliable objective function for multiple sequence alignments. J Mol Biol 314:937-951
    • (2001) J Mol Biol , vol.314 , pp. 937-951
    • Thompson, J.D.1    Plewniak, F.2    Ripp, R.3    Thierry, J.C.4    Poch, O.5
  • 44
    • 0037123359 scopus 로고    scopus 로고
    • Analysis and expression of the class III peroxidase large gene family in Arabidopsis thaliana
    • Tognolli M, Penel C, Greppin H, Simon P (2002) Analysis and expression of the class III peroxidase large gene family in Arabidopsis thaliana. Gene 288:129-138
    • (2002) Gene , vol.288 , pp. 129-138
    • Tognolli, M.1    Penel, C.2    Greppin, H.3    Simon, P.4
  • 46
    • 12944305786 scopus 로고
    • Superfamily of plant, fungal and bacterial peroxidases
    • Welinder KG (1992) Superfamily of plant, fungal and bacterial peroxidases. Curr Opin Struc Biol 2:388-393
    • (1992) Curr Opin Struc Biol , vol.2 , pp. 388-393
    • Welinder, K.G.1
  • 48
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza saliva L. ssp. indica)
    • Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, et al. (2002) A draft sequence of the rice genome (Oryza saliva L. ssp. indica). Science 296:79-92
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3    Wong, G.K.4    Li, S.5    Liu, B.6
  • 49
    • 0035089871 scopus 로고    scopus 로고
    • A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa
    • Zhang L, Pond SK, Gaut BS (2001) A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa. J Mol Evol 52:144-156
    • (2001) J Mol Evol , vol.52 , pp. 144-156
    • Zhang, L.1    Pond, S.K.2    Gaut, B.S.3


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